Wall clock time and date at job start Tue Mar 31 2020 20:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99932 * 2 1 4 4 C 1.53000 * 109.46916 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46668 * 64.99832 * 4 3 2 6 6 C 1.37094 * 120.00188 * 269.99474 * 5 4 3 7 7 H 1.07997 * 119.99881 * 140.82962 * 6 5 4 8 8 C 1.38948 * 119.99916 * 320.83025 * 6 5 4 9 9 N 1.31410 * 120.00381 * 342.76764 * 8 6 5 10 10 Si 1.86804 * 120.00069 * 162.76887 * 8 6 5 11 11 H 1.48503 * 109.47095 * 89.99872 * 10 8 6 12 12 H 1.48496 * 109.47320 * 209.99846 * 10 8 6 13 13 H 1.48503 * 109.46890 * 330.00344 * 10 8 6 14 14 C 1.34784 * 119.99712 * 90.00404 * 5 4 3 15 15 O 1.21293 * 119.99984 * 5.49048 * 14 5 4 16 16 C 1.50700 * 119.99709 * 185.49927 * 14 5 4 17 17 C 1.50700 * 109.47051 * 174.72001 * 16 14 5 18 18 C 1.33719 * 122.07513 * 124.99738 * 17 16 14 19 19 S 1.76253 * 108.21695 * 179.73002 * 18 17 16 20 20 C 1.76177 * 89.83709 * 359.97438 * 19 18 17 21 21 C 1.47892 * 125.47474 * 179.97438 * 20 19 18 22 22 N 1.34120 * 125.67630 * 179.66534 * 21 20 19 23 23 C 1.30625 * 109.77725 * 179.81548 * 22 21 20 24 24 N 1.34569 * 108.33801 * 0.45111 * 23 22 21 25 25 H 0.96996 * 126.73115 * 179.75574 * 24 23 22 26 26 N 1.31655 * 125.67065 * 359.97438 * 21 20 19 27 27 N 1.30224 * 109.05431 * 0.02562 * 20 19 18 28 28 H 1.08998 * 109.47067 * 300.00411 * 1 2 3 29 29 H 1.09002 * 109.47154 * 60.00031 * 1 2 3 30 30 H 1.08999 * 109.47207 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47098 * 59.99789 * 3 2 1 32 32 H 1.08998 * 109.46971 * 299.99738 * 3 2 1 33 33 H 1.08991 * 109.47256 * 305.00052 * 4 3 2 34 34 H 1.08999 * 109.46748 * 184.99665 * 4 3 2 35 35 H 0.96998 * 120.00764 * 185.02267 * 9 8 6 36 36 H 1.08997 * 109.47087 * 54.71988 * 16 14 5 37 37 H 1.09005 * 109.46889 * 294.71825 * 16 14 5 38 38 H 1.07996 * 125.88990 * 359.70863 * 18 17 16 39 39 H 1.08001 * 125.83377 * 180.19179 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0979 -0.7991 -1.3346 7 1 3.7990 -1.3135 -2.2359 8 6 4.6054 -1.5186 -0.2597 9 7 5.2753 -0.9008 0.6871 10 14 4.3356 -3.3644 -0.1605 11 1 5.4553 -4.0656 -0.8387 12 1 4.2810 -3.7809 1.2638 13 1 3.0559 -3.7141 -0.8280 14 6 4.2633 1.3329 -2.3201 15 8 4.2528 2.5415 -2.2181 16 6 4.5968 0.6910 -3.6421 17 6 4.7482 1.7587 -4.6949 18 6 5.8537 1.8708 -5.4387 19 16 5.6372 3.2239 -6.5471 20 6 4.0328 3.5092 -5.8775 21 6 3.1003 4.5737 -6.3071 22 7 1.8758 4.7905 -5.8046 23 6 1.3254 5.8109 -6.4065 24 7 2.1888 6.2747 -7.3286 25 1 2.0493 7.0235 -7.9291 26 7 3.3318 5.4625 -7.2503 27 7 3.8003 2.6328 -4.9428 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5686 0.8426 34 1 3.9784 2.1766 0.0902 35 1 5.6917 -1.4114 1.3989 36 1 3.7951 0.0101 -3.9279 37 1 5.5302 0.1356 -3.5511 38 1 6.7285 1.2411 -5.3715 39 1 0.3433 6.2111 -6.2021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160822681.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:44 Heat of formation + Delta-G solvation = 74.792274 kcal Electronic energy + Delta-G solvation = -26408.042286 eV Core-core repulsion = 22480.899743 eV Total energy + Delta-G solvation = -3927.142543 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.19711 -39.61021 -38.18622 -36.76270 -34.50872 -33.24736 -31.92939 -31.43879 -31.01816 -29.29293 -27.40792 -25.70108 -25.45525 -24.49424 -22.98234 -22.08646 -20.86523 -19.31962 -18.94119 -18.40400 -17.64228 -16.44275 -16.12754 -15.72411 -15.58609 -15.30418 -15.15077 -15.01135 -14.36107 -14.26120 -14.10993 -13.75061 -13.51998 -13.12149 -12.77572 -12.39898 -12.35731 -11.87733 -11.71313 -11.29644 -11.07862 -10.98933 -10.81813 -10.80461 -10.56970 -10.49617 -10.27110 -10.23869 -10.14006 -9.92885 -9.37957 -9.10917 -9.01548 -8.84526 -8.45733 -8.14566 -7.30686 -6.19898 -3.90106 0.48793 1.38839 1.53476 1.87777 2.33138 2.67124 3.22543 3.32486 3.38319 3.43436 3.69422 4.03980 4.26868 4.31227 4.63983 4.83487 4.90482 5.06162 5.21331 5.42963 5.66191 5.77083 5.84863 5.88948 5.92848 6.07592 6.11553 6.19483 6.21100 6.34357 6.42388 6.50464 6.60749 6.76630 6.89542 7.41568 7.62375 7.78410 7.96528 8.10960 8.16843 8.51403 9.25399 9.66438 10.09286 10.83341 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.003401 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.360535 B = 8231.702340 C = 9540.801584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.054 3.946 4 C 0.114 3.886 5 N -0.434 5.434 6 C -0.321 4.321 7 H 0.084 0.916 8 C 0.050 3.950 9 N -0.870 5.870 10 Si 0.916 3.084 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.269 1.269 14 C 0.481 3.519 15 O -0.592 6.592 16 C -0.053 4.053 17 C 0.103 3.897 18 C -0.236 4.236 19 S 0.106 5.894 20 C 0.125 3.875 21 C 0.313 3.687 22 N -0.500 5.500 23 C 0.263 3.737 24 N -0.481 5.481 25 H 0.444 0.556 26 N -0.297 5.297 27 N -0.384 5.384 28 H 0.028 0.972 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.040 0.960 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.267 0.733 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.184 0.816 39 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.448 8.848 -12.976 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.024 4.024 4 C -0.010 4.010 5 N -0.153 5.153 6 C -0.449 4.449 7 H 0.102 0.898 8 C -0.155 4.155 9 N -0.508 5.508 10 Si 0.743 3.257 11 H -0.207 1.207 12 H -0.210 1.210 13 H -0.193 1.193 14 C 0.269 3.731 15 O -0.477 6.477 16 C -0.095 4.095 17 C -0.031 4.031 18 C -0.376 4.376 19 S 0.358 5.642 20 C -0.154 4.154 21 C 0.030 3.970 22 N -0.228 5.228 23 C -0.036 4.036 24 N -0.201 5.201 25 H 0.290 0.710 26 N -0.129 5.129 27 N -0.099 5.099 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.133 0.867 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.201 0.799 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -4.679 9.511 -13.315 17.019 hybrid contribution -0.835 -0.715 0.504 1.210 sum -5.515 8.796 -12.811 16.489 Atomic orbital electron populations 1.22634 0.83681 1.01577 0.98769 1.88151 1.17137 1.27714 1.95003 1.23046 0.96687 0.84259 0.98416 1.21458 0.89047 0.99060 0.91456 1.43218 1.56922 1.06116 1.09047 1.19266 1.42169 0.80824 1.02647 0.89796 1.25265 0.94510 0.99694 0.96025 1.69773 1.30859 1.36215 1.13944 0.86118 0.78821 0.83209 0.77556 1.20710 1.21017 1.19336 1.20031 0.80209 0.86790 0.86062 1.90558 1.57201 1.14507 1.85415 1.20140 1.04658 0.94180 0.90536 1.19933 0.88574 0.96572 0.98012 1.26983 1.04312 1.03798 1.02503 1.84715 1.14573 1.27424 1.37450 1.23547 0.94391 0.98539 0.98875 1.20635 0.90705 0.93441 0.92231 1.70733 1.07284 1.16649 1.28089 1.26299 0.97897 0.91737 0.87678 1.48117 1.12138 1.28117 1.31767 0.71030 1.78273 1.05751 1.07133 1.21773 1.66216 1.31190 1.01796 1.10660 0.95341 0.94962 0.90568 0.94563 0.94208 0.86705 0.91237 0.92227 0.88245 0.87571 0.79854 0.75539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -8.07 10.18 -35.23 -0.36 -8.43 16 3 C 0.05 1.18 6.28 37.16 0.23 1.41 16 4 C 0.11 2.82 5.47 -4.04 -0.02 2.80 16 5 N -0.43 -11.16 2.49 -114.81 -0.29 -11.45 16 6 C -0.32 -8.21 8.17 -14.94 -0.12 -8.34 16 7 H 0.08 2.05 6.98 -52.49 -0.37 1.69 16 8 C 0.05 1.28 5.05 -17.47 -0.09 1.19 16 9 N -0.87 -23.34 11.31 55.50 0.63 -22.71 16 10 Si 0.92 20.17 29.59 -169.99 -5.03 15.14 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 14 C 0.48 12.07 7.56 -10.98 -0.08 11.99 16 15 O -0.59 -16.32 15.10 5.55 0.08 -16.24 16 16 C -0.05 -1.08 4.89 -29.03 -0.14 -1.22 16 17 C 0.10 2.00 5.55 -84.40 -0.47 1.53 16 18 C -0.24 -3.73 11.02 29.15 0.32 -3.41 16 19 S 0.11 1.56 23.43 -107.50 -2.52 -0.96 16 20 C 0.12 2.29 7.54 -14.28 -0.11 2.18 16 21 C 0.31 5.24 8.04 -156.60 -1.26 3.98 16 22 N -0.50 -7.96 11.22 -12.47 -0.14 -8.10 16 23 C 0.26 2.50 13.11 -90.70 -1.19 1.31 16 24 N -0.48 -4.23 7.44 29.52 0.22 -4.01 16 25 H 0.44 1.79 8.96 -182.34 -1.63 0.16 16 26 N -0.30 -4.10 12.84 32.03 0.41 -3.69 16 27 N -0.38 -8.05 9.79 -7.54 -0.07 -8.13 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.12 3.05 5.47 -51.93 -0.28 2.76 16 34 H 0.07 1.75 7.35 -51.93 -0.38 1.37 16 35 H 0.27 6.81 8.32 -40.82 -0.34 6.47 16 36 H 0.10 1.96 7.57 -51.93 -0.39 1.56 16 37 H 0.11 1.98 8.01 -51.93 -0.42 1.57 16 38 H 0.18 2.29 8.06 -52.49 -0.42 1.87 16 39 H 0.23 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 357.88 15.07 5.39 5.39 Total: -1.00 -36.67 357.88 -9.06 -45.73 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.57 Total: 2.39 kcal Atomic # 6 Polarization: 16.88 SS G_CDS: -1.82 Total: 15.06 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.76 Total: -58.09 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.27 Total: -24.67 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.52 Total: -0.96 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.67 -9.06 -45.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160822681.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.518 kcal (2) G-P(sol) polarization free energy of solvation -36.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds