Wall clock time and date at job start Tue Mar 31 2020 20:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99932 * 2 1 4 4 C 1.53000 * 109.46916 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46668 * 64.99832 * 4 3 2 6 6 C 1.37094 * 120.00188 * 269.99474 * 5 4 3 7 7 H 1.07997 * 119.99881 * 140.82962 * 6 5 4 8 8 C 1.38948 * 119.99916 * 320.83025 * 6 5 4 9 9 N 1.31410 * 120.00381 * 342.76764 * 8 6 5 10 10 Si 1.86804 * 120.00069 * 162.76887 * 8 6 5 11 11 H 1.48503 * 109.47095 * 89.99872 * 10 8 6 12 12 H 1.48496 * 109.47320 * 209.99846 * 10 8 6 13 13 H 1.48503 * 109.46890 * 330.00344 * 10 8 6 14 14 C 1.34784 * 119.99712 * 90.00404 * 5 4 3 15 15 O 1.21293 * 119.99984 * 5.49048 * 14 5 4 16 16 C 1.50700 * 119.99709 * 185.49927 * 14 5 4 17 17 C 1.50700 * 109.47051 * 174.72001 * 16 14 5 18 18 C 1.33719 * 122.07513 * 124.99738 * 17 16 14 19 19 S 1.76253 * 108.21695 * 179.73002 * 18 17 16 20 20 C 1.76177 * 89.83709 * 359.97438 * 19 18 17 21 21 C 1.47892 * 125.47474 * 179.97438 * 20 19 18 22 22 N 1.34120 * 125.67630 * 179.66534 * 21 20 19 23 23 C 1.30625 * 109.77725 * 179.81548 * 22 21 20 24 24 N 1.34569 * 108.33801 * 0.45111 * 23 22 21 25 25 H 0.96996 * 126.73115 * 179.75574 * 24 23 22 26 26 N 1.31655 * 125.67065 * 359.97438 * 21 20 19 27 27 N 1.30224 * 109.05431 * 0.02562 * 20 19 18 28 28 H 1.08998 * 109.47067 * 300.00411 * 1 2 3 29 29 H 1.09002 * 109.47154 * 60.00031 * 1 2 3 30 30 H 1.08999 * 109.47207 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47098 * 59.99789 * 3 2 1 32 32 H 1.08998 * 109.46971 * 299.99738 * 3 2 1 33 33 H 1.08991 * 109.47256 * 305.00052 * 4 3 2 34 34 H 1.08999 * 109.46748 * 184.99665 * 4 3 2 35 35 H 0.96998 * 120.00764 * 185.02267 * 9 8 6 36 36 H 1.08997 * 109.47087 * 54.71988 * 16 14 5 37 37 H 1.09005 * 109.46889 * 294.71825 * 16 14 5 38 38 H 1.07996 * 125.88990 * 359.70863 * 18 17 16 39 39 H 1.08001 * 125.83377 * 180.19179 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0979 -0.7991 -1.3346 7 1 3.7990 -1.3135 -2.2359 8 6 4.6054 -1.5186 -0.2597 9 7 5.2753 -0.9008 0.6871 10 14 4.3356 -3.3644 -0.1605 11 1 5.4553 -4.0656 -0.8387 12 1 4.2810 -3.7809 1.2638 13 1 3.0559 -3.7141 -0.8280 14 6 4.2633 1.3329 -2.3201 15 8 4.2528 2.5415 -2.2181 16 6 4.5968 0.6910 -3.6421 17 6 4.7482 1.7587 -4.6949 18 6 5.8537 1.8708 -5.4387 19 16 5.6372 3.2239 -6.5471 20 6 4.0328 3.5092 -5.8775 21 6 3.1003 4.5737 -6.3071 22 7 1.8758 4.7905 -5.8046 23 6 1.3254 5.8109 -6.4065 24 7 2.1888 6.2747 -7.3286 25 1 2.0493 7.0235 -7.9291 26 7 3.3318 5.4625 -7.2503 27 7 3.8003 2.6328 -4.9428 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5686 0.8426 34 1 3.9784 2.1766 0.0902 35 1 5.6917 -1.4114 1.3989 36 1 3.7951 0.0101 -3.9279 37 1 5.5302 0.1356 -3.5511 38 1 6.7285 1.2411 -5.3715 39 1 0.3433 6.2111 -6.2021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160822681.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:44 Heat of formation + Delta-G solvation = 48.385323 kcal Electronic energy + Delta-G solvation = -26409.187378 eV Core-core repulsion = 22480.899743 eV Total energy + Delta-G solvation = -3928.287634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.12686 -41.10187 -39.94075 -38.45890 -36.45440 -34.31783 -33.41292 -33.03690 -32.29280 -30.94359 -28.90488 -27.23448 -26.74764 -26.33561 -23.90740 -23.73522 -22.17501 -20.95361 -20.37328 -19.39034 -19.09042 -18.06862 -17.92616 -17.11540 -16.98694 -16.74665 -16.61066 -16.08377 -16.04269 -15.89123 -15.75913 -15.26393 -15.09961 -14.47581 -14.19859 -14.04039 -13.53177 -13.43125 -13.30485 -13.07368 -12.80185 -12.62115 -12.52019 -12.41864 -12.26503 -12.04190 -11.75430 -11.55402 -11.23236 -11.14501 -10.95073 -10.67714 -10.50493 -10.33493 -10.27191 -9.50340 -9.29923 -8.15149 -5.91149 -0.71386 0.18275 0.57979 0.62346 1.48207 1.53243 1.55323 1.56719 1.66118 2.13159 2.19521 2.43533 2.70756 3.01020 3.09768 3.31452 3.42248 3.82040 4.09995 4.19882 4.27788 4.28765 4.38824 4.54349 4.56134 4.64617 4.66592 4.70475 4.80992 4.82731 4.90330 4.91861 5.01795 5.18383 5.41880 5.63971 6.13946 6.16941 6.44655 6.53948 6.74296 6.97847 7.28017 7.71510 8.14830 8.88958 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.003401 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.360535 B = 8231.702340 C = 9540.801584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.067 3.933 4 C 0.112 3.888 5 N -0.444 5.444 6 C -0.331 4.331 7 H 0.092 0.908 8 C 0.010 3.990 9 N -0.901 5.901 10 Si 0.980 3.020 11 H -0.269 1.269 12 H -0.288 1.288 13 H -0.266 1.266 14 C 0.468 3.532 15 O -0.625 6.625 16 C -0.041 4.041 17 C 0.067 3.933 18 C -0.226 4.226 19 S 0.176 5.824 20 C 0.098 3.902 21 C 0.283 3.717 22 N -0.562 5.562 23 C 0.285 3.715 24 N -0.458 5.458 25 H 0.466 0.534 26 N -0.307 5.307 27 N -0.432 5.432 28 H 0.051 0.949 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.024 0.976 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.269 0.731 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.217 0.783 39 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.102 8.857 -14.564 18.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.010 4.010 4 C -0.012 4.012 5 N -0.163 5.163 6 C -0.458 4.458 7 H 0.110 0.890 8 C -0.191 4.191 9 N -0.540 5.540 10 Si 0.804 3.196 11 H -0.194 1.194 12 H -0.214 1.214 13 H -0.191 1.191 14 C 0.257 3.743 15 O -0.512 6.512 16 C -0.083 4.083 17 C -0.066 4.066 18 C -0.366 4.366 19 S 0.429 5.571 20 C -0.180 4.180 21 C 0.000 4.000 22 N -0.291 5.291 23 C -0.013 4.013 24 N -0.180 5.180 25 H 0.317 0.683 26 N -0.142 5.142 27 N -0.148 5.148 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.140 0.860 38 H 0.234 0.766 39 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -5.351 9.553 -14.949 18.530 hybrid contribution -0.690 -0.548 0.917 1.272 sum -6.041 9.005 -14.032 17.733 Atomic orbital electron populations 1.22882 0.80865 1.03301 1.00100 1.88078 1.20249 1.27545 1.95247 1.22782 0.94747 0.84617 0.98880 1.21370 0.91170 0.97634 0.91032 1.43458 1.56983 1.06497 1.09360 1.19541 1.42212 0.80869 1.03204 0.89032 1.26027 0.93949 1.03688 0.95467 1.69890 1.31750 1.37798 1.14563 0.85138 0.78995 0.78241 0.77189 1.19386 1.21405 1.19061 1.20824 0.79459 0.86588 0.87409 1.90516 1.58515 1.16001 1.86175 1.20005 1.05263 0.94577 0.88488 1.19838 0.90101 0.97343 0.99335 1.27396 1.03966 1.03973 1.01264 1.84359 1.11699 1.25549 1.35471 1.23980 0.96446 0.98650 0.98874 1.20641 0.91355 0.94304 0.93671 1.70644 1.07935 1.19780 1.30700 1.27231 0.98853 0.89523 0.85677 1.48023 1.10598 1.27751 1.31649 0.68295 1.78126 1.07848 1.07148 1.21033 1.66138 1.32931 1.03200 1.12538 0.93048 0.94503 0.88703 0.91881 0.95736 0.88381 0.92905 0.92177 0.88135 0.85971 0.76606 0.70094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.81 11.01 113.37 1.25 2.06 16 2 O -0.39 -17.44 10.18 -148.98 -1.52 -18.95 16 3 C 0.07 3.02 6.28 71.98 0.45 3.47 16 4 C 0.11 5.78 5.47 86.38 0.47 6.25 16 5 N -0.44 -23.54 2.49 -635.54 -1.58 -25.13 16 6 C -0.33 -17.09 8.17 84.04 0.69 -16.41 16 7 H 0.09 4.49 6.98 -2.91 -0.02 4.47 16 8 C 0.01 0.54 5.05 84.93 0.43 0.97 16 9 N -0.90 -49.10 11.31 21.66 0.25 -48.85 16 10 Si 0.98 41.06 29.59 68.60 2.03 43.09 16 11 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 12 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 14 C 0.47 24.31 7.56 87.66 0.66 24.97 16 15 O -0.62 -36.06 15.10 -3.07 -0.05 -36.10 16 16 C -0.04 -1.73 4.89 29.10 0.14 -1.58 16 17 C 0.07 2.65 5.55 41.61 0.23 2.89 16 18 C -0.23 -6.90 11.02 66.79 0.74 -6.17 16 19 S 0.18 5.00 23.43 -56.49 -1.32 3.68 16 20 C 0.10 3.65 7.54 87.49 0.66 4.31 16 21 C 0.28 9.54 8.04 137.22 1.10 10.65 16 22 N -0.56 -17.84 11.22 -193.38 -2.17 -20.01 16 23 C 0.29 4.80 13.11 180.38 2.36 7.17 16 24 N -0.46 -7.00 7.44 -60.52 -0.45 -7.45 16 25 H 0.47 2.34 8.96 -213.11 -1.91 0.43 16 26 N -0.31 -8.19 12.84 -52.59 -0.68 -8.87 16 27 N -0.43 -18.74 9.79 -177.78 -1.74 -20.48 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 5.40 5.47 -2.39 -0.01 5.39 16 34 H 0.05 2.82 7.35 -2.39 -0.02 2.80 16 35 H 0.27 13.86 8.32 -92.71 -0.77 13.09 16 36 H 0.10 4.07 7.57 -2.39 -0.02 4.05 16 37 H 0.12 4.57 8.01 -2.38 -0.02 4.55 16 38 H 0.22 4.86 8.06 -2.91 -0.02 4.84 16 39 H 0.28 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -84.02 357.88 1.17 -82.85 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -0.79 Total: 17.65 kcal Atomic # 6 Polarization: 29.38 SS G_CDS: 9.19 Total: 38.57 kcal Atomic # 7 Polarization: -124.41 SS G_CDS: -6.37 Total: -130.79 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -1.56 Total: -55.06 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.32 Total: 3.68 kcal Total: -84.02 1.17 -82.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160822681.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.240 kcal (2) G-P(sol) polarization free energy of solvation -84.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds