Wall clock time and date at job start Tue Mar 31 2020 20:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 117.00065 * 2 1 4 4 O 1.20824 * 119.99885 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00140 * 179.97438 * 3 2 1 6 6 C 1.50695 * 109.47463 * 180.02562 * 5 3 2 7 7 C 1.38328 * 120.81435 * 265.00517 * 6 5 3 8 8 C 1.38488 * 119.50222 * 179.97438 * 7 6 5 9 9 Cl 1.73594 * 119.40694 * 179.97438 * 8 7 6 10 10 N 1.32025 * 121.18825 * 0.02778 * 8 7 6 11 11 C 1.32361 * 121.75952 * 359.97312 * 10 8 7 12 12 N 1.38395 * 119.81511 * 179.97438 * 11 10 8 13 13 C 1.46498 * 119.99916 * 0.27909 * 12 11 10 14 14 C 1.52996 * 109.47059 * 179.72333 * 13 12 11 15 15 C 1.53003 * 109.47301 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47008 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00362 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99653 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00420 * 0.02562 * 18 16 15 20 20 Si 1.86810 * 119.99928 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46710 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47158 * 119.99784 * 20 18 16 23 23 H 1.48502 * 109.46769 * 240.00242 * 20 18 16 24 24 C 1.39984 * 120.81210 * 85.27571 * 6 5 3 25 25 C 1.43201 * 120.59459 * 359.97438 * 24 6 5 26 26 N 4.65979 * 117.10683 * 56.16310 * 2 1 3 27 27 H 1.08997 * 109.47026 * 59.99947 * 1 2 3 28 28 H 1.08997 * 109.47080 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46833 * 299.99874 * 1 2 3 30 30 H 1.09007 * 109.47042 * 60.00417 * 5 3 2 31 31 H 1.08997 * 109.47529 * 300.00682 * 5 3 2 32 32 H 1.08004 * 120.25147 * 359.97438 * 7 6 5 33 33 H 0.97001 * 119.99639 * 179.97438 * 12 11 10 34 34 H 1.09004 * 109.46963 * 299.72129 * 13 12 11 35 35 H 1.08994 * 109.47567 * 59.72281 * 13 12 11 36 36 H 1.09004 * 109.47066 * 299.99732 * 14 13 12 37 37 H 1.09000 * 109.47665 * 59.99541 * 14 13 12 38 38 H 1.08990 * 109.47021 * 299.99845 * 15 14 13 39 39 H 1.09002 * 109.46620 * 60.00037 * 15 14 13 40 40 H 0.97000 * 120.00497 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 3.9937 2.7200 0.0011 7 6 4.2942 3.3705 -1.1821 8 6 4.6837 4.6991 -1.1501 9 17 5.0609 5.5127 -2.6364 10 7 4.7742 5.3577 -0.0095 11 6 4.4982 4.7832 1.1506 12 7 4.6071 5.5115 2.3223 13 6 5.0209 6.9161 2.2760 14 6 5.0540 7.4851 3.6958 15 6 5.4868 8.9518 3.6475 16 6 5.5188 9.5124 5.0460 17 1 5.2572 8.8852 5.8853 18 6 5.8832 10.8258 5.2540 19 7 6.2024 11.5895 4.2319 20 14 5.9237 11.5205 6.9876 21 1 5.5240 10.4654 7.9531 22 1 7.2984 11.9854 7.3026 23 1 4.9801 12.6631 7.0850 24 6 4.1016 3.4354 1.1995 25 6 3.8069 2.8074 2.4523 26 7 3.5753 2.3097 3.4454 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.9564 0.7806 -0.8892 31 1 3.9558 0.7809 0.8907 32 1 4.2257 2.8462 -2.1239 33 1 4.4051 5.0932 3.1739 34 1 6.0140 6.9878 1.8325 35 1 4.3121 7.4840 1.6734 36 1 4.0608 7.4134 4.1393 37 1 5.7628 6.9172 4.2984 38 1 6.4799 9.0232 3.2043 39 1 4.7782 9.5200 3.0448 40 1 6.4591 12.5134 4.3783 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168426593.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:08 Heat of formation + Delta-G solvation = -36.130786 kcal Electronic energy + Delta-G solvation = -25241.893425 eV Core-core repulsion = 21275.604440 eV Total energy + Delta-G solvation = -3966.288985 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.30582 -40.48199 -37.32801 -37.18188 -36.65963 -36.37970 -34.37235 -33.56810 -31.88767 -30.18388 -29.79905 -27.72091 -26.54141 -24.65615 -23.54503 -22.35404 -21.06369 -20.54597 -19.18136 -18.15257 -17.93542 -17.60340 -16.86357 -16.74927 -16.28395 -15.65061 -15.49506 -14.63248 -14.51385 -14.38167 -14.34365 -13.94260 -13.86722 -13.66450 -13.61133 -13.15596 -12.79361 -12.52677 -12.46732 -12.40209 -12.33666 -11.81962 -11.63546 -11.51477 -11.23252 -11.05261 -10.94790 -10.79859 -10.57503 -10.40178 -10.00878 -9.91798 -9.72107 -9.51141 -9.14474 -8.39450 -7.98743 -6.03965 -4.06906 0.20343 0.90189 1.44915 1.74196 2.28040 2.36528 2.67832 2.98987 3.29107 3.36774 3.40735 3.49589 3.58034 3.81406 4.29433 4.33312 4.42865 4.56754 4.59832 4.70173 4.78542 4.83316 4.93515 5.12162 5.15842 5.32081 5.55774 5.57489 5.69641 5.77790 5.92710 6.08245 6.52338 6.52586 6.80400 6.95711 7.04691 7.21925 7.26553 7.60493 7.72053 7.75797 7.94489 8.35561 8.99634 9.57545 11.07247 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.002435 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.699322 B =11496.204085 C =13108.390572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.462 3.538 4 O -0.488 6.488 5 C -0.081 4.081 6 C 0.068 3.932 7 C -0.215 4.215 8 C 0.266 3.734 9 Cl -0.017 7.017 10 N -0.526 5.526 11 C 0.477 3.523 12 N -0.696 5.696 13 C 0.121 3.879 14 C -0.125 4.125 15 C 0.026 3.974 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.284 1.284 24 C -0.149 4.149 25 C 0.258 3.742 26 N -0.411 5.411 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.152 0.848 33 H 0.411 0.589 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.155 -24.999 -15.871 30.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.303 3.697 4 O -0.374 6.374 5 C -0.119 4.119 6 C 0.057 3.943 7 C -0.240 4.240 8 C 0.097 3.903 9 Cl 0.011 6.989 10 N -0.246 5.246 11 C 0.234 3.766 12 N -0.322 5.322 13 C -0.001 4.001 14 C -0.163 4.163 15 C -0.011 4.011 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.161 4.161 25 C -0.057 4.057 26 N -0.087 5.087 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.152 0.848 31 H 0.140 0.860 32 H 0.170 0.830 33 H 0.248 0.752 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.336 -24.081 -14.439 28.784 hybrid contribution -0.366 -0.033 0.742 0.828 sum -6.701 -24.114 -13.697 28.531 Atomic orbital electron populations 1.23322 0.75674 1.03914 1.02889 1.86474 1.23903 1.32918 1.84207 1.23268 0.91337 0.81817 0.73253 1.90763 1.66821 1.36066 1.43754 1.20358 0.89260 0.94114 1.08145 1.19175 0.90906 0.93259 0.90913 1.21145 1.10002 0.93961 0.98870 1.21423 0.92067 0.88794 0.88045 1.98437 1.91958 1.80452 1.28012 1.66578 1.23531 1.38224 0.96279 1.17841 0.86757 0.85462 0.86556 1.45160 1.69172 1.13305 1.04583 1.21829 1.00583 0.77569 1.00160 1.21941 1.01161 1.00667 0.92498 1.19013 0.96913 0.87738 0.97484 1.21228 1.45845 0.96158 0.92841 0.92638 1.25021 0.95299 0.97160 0.96945 1.69968 1.46027 1.07289 1.29914 0.86533 0.77664 0.79046 0.84744 1.19780 1.20959 1.20964 1.16032 1.18380 0.93713 0.87989 1.25134 0.93578 0.94294 0.92681 1.81254 1.09856 1.07573 1.10045 0.91579 0.87845 0.91715 0.84811 0.85995 0.83020 0.75217 0.90967 0.91020 0.92693 0.92674 0.96133 0.96148 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -2.87 10.57 -39.26 -0.41 -3.28 16 3 C 0.46 4.22 7.95 36.00 0.29 4.51 16 4 O -0.49 -6.12 15.78 -18.75 -0.30 -6.42 16 5 C -0.08 -0.52 5.53 -29.04 -0.16 -0.68 16 6 C 0.07 0.62 4.44 -103.94 -0.46 0.16 16 7 C -0.22 -1.86 9.53 -39.46 -0.38 -2.24 16 8 C 0.27 3.00 7.27 -17.38 -0.13 2.87 16 9 Cl -0.02 -0.18 29.09 -51.86 -1.51 -1.69 16 10 N -0.53 -7.27 9.52 -9.28 -0.09 -7.36 16 11 C 0.48 6.44 7.49 -155.09 -1.16 5.28 16 12 N -0.70 -10.00 5.62 -60.20 -0.34 -10.33 16 13 C 0.12 2.01 5.68 -4.04 -0.02 1.98 16 14 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 15 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 16 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.15 -1.74 5.77 -106.43 -0.61 -2.35 16 25 C 0.26 3.22 12.80 -22.51 -0.29 2.93 16 26 N -0.41 -5.72 18.53 41.79 0.77 -4.95 16 27 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.13 0.35 8.07 -51.92 -0.42 -0.07 16 31 H 0.12 0.69 7.36 -51.93 -0.38 0.30 16 32 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.41 5.59 7.31 -40.82 -0.30 5.29 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 375.20 15.07 5.65 5.65 Total: -1.00 -33.32 375.20 -7.92 -41.24 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.87 Total: -1.88 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.55 Total: -1.68 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 1.08 Total: -48.54 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.71 Total: -9.70 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.51 Total: -1.69 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.32 -7.92 -41.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426593.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.114 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds