Wall clock time and date at job start Tue Mar 31 2020 20:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 117.00065 * 2 1 4 4 O 1.20824 * 119.99885 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00140 * 179.97438 * 3 2 1 6 6 C 1.50695 * 109.47463 * 180.02562 * 5 3 2 7 7 C 1.38328 * 120.81435 * 265.00517 * 6 5 3 8 8 C 1.38488 * 119.50222 * 179.97438 * 7 6 5 9 9 Cl 1.73594 * 119.40694 * 179.97438 * 8 7 6 10 10 N 1.32025 * 121.18825 * 0.02778 * 8 7 6 11 11 C 1.32361 * 121.75952 * 359.97312 * 10 8 7 12 12 N 1.38395 * 119.81511 * 179.97438 * 11 10 8 13 13 C 1.46498 * 119.99916 * 0.27909 * 12 11 10 14 14 C 1.52996 * 109.47059 * 179.72333 * 13 12 11 15 15 C 1.53003 * 109.47301 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47008 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00362 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99653 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00420 * 0.02562 * 18 16 15 20 20 Si 1.86810 * 119.99928 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46710 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47158 * 119.99784 * 20 18 16 23 23 H 1.48502 * 109.46769 * 240.00242 * 20 18 16 24 24 C 1.39984 * 120.81210 * 85.27571 * 6 5 3 25 25 C 1.43201 * 120.59459 * 359.97438 * 24 6 5 26 26 N 4.65979 * 117.10683 * 56.16310 * 2 1 3 27 27 H 1.08997 * 109.47026 * 59.99947 * 1 2 3 28 28 H 1.08997 * 109.47080 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46833 * 299.99874 * 1 2 3 30 30 H 1.09007 * 109.47042 * 60.00417 * 5 3 2 31 31 H 1.08997 * 109.47529 * 300.00682 * 5 3 2 32 32 H 1.08004 * 120.25147 * 359.97438 * 7 6 5 33 33 H 0.97001 * 119.99639 * 179.97438 * 12 11 10 34 34 H 1.09004 * 109.46963 * 299.72129 * 13 12 11 35 35 H 1.08994 * 109.47567 * 59.72281 * 13 12 11 36 36 H 1.09004 * 109.47066 * 299.99732 * 14 13 12 37 37 H 1.09000 * 109.47665 * 59.99541 * 14 13 12 38 38 H 1.08990 * 109.47021 * 299.99845 * 15 14 13 39 39 H 1.09002 * 109.46620 * 60.00037 * 15 14 13 40 40 H 0.97000 * 120.00497 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 3.9937 2.7200 0.0011 7 6 4.2942 3.3705 -1.1821 8 6 4.6837 4.6991 -1.1501 9 17 5.0609 5.5127 -2.6364 10 7 4.7742 5.3577 -0.0095 11 6 4.4982 4.7832 1.1506 12 7 4.6071 5.5115 2.3223 13 6 5.0209 6.9161 2.2760 14 6 5.0540 7.4851 3.6958 15 6 5.4868 8.9518 3.6475 16 6 5.5188 9.5124 5.0460 17 1 5.2572 8.8852 5.8853 18 6 5.8832 10.8258 5.2540 19 7 6.2024 11.5895 4.2319 20 14 5.9237 11.5205 6.9876 21 1 5.5240 10.4654 7.9531 22 1 7.2984 11.9854 7.3026 23 1 4.9801 12.6631 7.0850 24 6 4.1016 3.4354 1.1995 25 6 3.8069 2.8074 2.4523 26 7 3.5753 2.3097 3.4454 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.9564 0.7806 -0.8892 31 1 3.9558 0.7809 0.8907 32 1 4.2257 2.8462 -2.1239 33 1 4.4051 5.0932 3.1739 34 1 6.0140 6.9878 1.8325 35 1 4.3121 7.4840 1.6734 36 1 4.0608 7.4134 4.1393 37 1 5.7628 6.9172 4.2984 38 1 6.4799 9.0232 3.2043 39 1 4.7782 9.5200 3.0448 40 1 6.4591 12.5134 4.3783 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168426593.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:07 Heat of formation + Delta-G solvation = -55.732416 kcal Electronic energy + Delta-G solvation = -25242.743416 eV Core-core repulsion = 21275.604440 eV Total energy + Delta-G solvation = -3967.138976 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.10808 -41.25936 -38.28778 -38.04156 -37.57806 -37.36319 -35.75185 -34.89505 -33.53867 -31.25425 -30.68322 -28.40681 -28.10802 -25.54625 -25.14731 -23.36332 -22.27239 -21.79699 -20.11167 -18.94700 -18.77701 -18.63351 -18.27958 -17.52317 -17.43236 -16.68115 -16.56046 -16.45547 -15.78063 -15.65793 -15.17354 -14.67468 -14.58769 -14.52025 -14.43780 -14.29780 -14.07933 -13.94219 -13.75548 -13.55175 -13.01876 -12.96697 -12.95619 -12.66745 -12.60172 -12.36489 -12.32643 -11.86558 -11.83496 -11.71257 -11.54560 -11.21590 -11.17807 -10.88407 -10.74051 -10.57619 -9.00196 -8.21822 -6.32749 -0.67234 0.07388 0.61196 1.08547 1.38001 1.38918 1.39315 1.52202 1.67477 1.75486 1.92697 2.39784 2.59216 2.68941 3.05263 3.11741 3.57854 3.60688 3.85420 3.88536 4.09121 4.17112 4.19175 4.29258 4.32148 4.34731 4.51502 4.54185 4.71434 4.82079 4.92491 4.93332 5.10833 5.13142 5.32700 5.47746 5.68405 5.72813 5.82062 5.96546 6.21263 6.23779 6.62052 6.77211 6.83881 7.36454 8.90147 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.002435 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.699322 B =11496.204085 C =13108.390572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.462 3.538 4 O -0.530 6.530 5 C -0.079 4.079 6 C 0.074 3.926 7 C -0.192 4.192 8 C 0.249 3.751 9 Cl -0.012 7.012 10 N -0.556 5.556 11 C 0.462 3.538 12 N -0.703 5.703 13 C 0.143 3.857 14 C -0.108 4.108 15 C 0.029 3.971 16 C -0.543 4.543 17 H 0.060 0.940 18 C 0.000 4.000 19 N -0.931 5.931 20 Si 0.964 3.036 21 H -0.264 1.264 22 H -0.277 1.277 23 H -0.278 1.278 24 C -0.152 4.152 25 C 0.274 3.726 26 N -0.439 5.439 27 H 0.067 0.933 28 H 0.134 0.866 29 H 0.052 0.948 30 H 0.183 0.817 31 H 0.134 0.866 32 H 0.193 0.807 33 H 0.413 0.587 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.061 0.939 38 H -0.001 1.001 39 H -0.004 1.004 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.318 -27.444 -16.463 32.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.306 3.694 4 O -0.419 6.419 5 C -0.115 4.115 6 C 0.064 3.936 7 C -0.215 4.215 8 C 0.082 3.918 9 Cl 0.017 6.983 10 N -0.277 5.277 11 C 0.221 3.779 12 N -0.332 5.332 13 C 0.019 3.981 14 C -0.146 4.146 15 C -0.009 4.009 16 C -0.581 4.581 17 H 0.078 0.922 18 C -0.198 4.198 19 N -0.571 5.571 20 Si 0.789 3.211 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.204 1.204 24 C -0.165 4.165 25 C -0.040 4.040 26 N -0.115 5.115 27 H 0.086 0.914 28 H 0.152 0.848 29 H 0.071 0.929 30 H 0.200 0.800 31 H 0.152 0.848 32 H 0.210 0.790 33 H 0.251 0.749 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.017 0.983 39 H 0.014 0.986 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.503 -26.582 -15.065 31.239 hybrid contribution -0.355 0.645 0.781 1.073 sum -6.857 -25.938 -14.283 30.394 Atomic orbital electron populations 1.23548 0.74742 1.05780 1.02383 1.86476 1.24883 1.32288 1.83716 1.23754 0.92262 0.81476 0.71942 1.90759 1.67918 1.37334 1.45915 1.20560 0.87474 0.92400 1.11095 1.19521 0.89575 0.94618 0.89913 1.21586 1.06894 0.92733 1.00314 1.21776 0.92568 0.89896 0.87587 1.98439 1.91930 1.80624 1.27313 1.66490 1.24479 1.39576 0.97130 1.17897 0.87787 0.86080 0.86133 1.44831 1.70748 1.12282 1.05325 1.21311 0.99998 0.79046 0.97724 1.21646 1.01148 0.97250 0.94594 1.18890 0.95138 0.91051 0.95832 1.21678 1.45626 0.96710 0.94082 0.92216 1.25962 0.94845 0.97652 1.01362 1.70095 1.46930 1.07734 1.32312 0.85415 0.77880 0.78356 0.79484 1.18756 1.20287 1.20416 1.16135 1.18546 0.93126 0.88645 1.25198 0.92755 0.93597 0.92497 1.81264 1.10940 1.08655 1.10686 0.91432 0.84837 0.92946 0.79977 0.84846 0.78984 0.74948 0.91638 0.92192 0.92388 0.92007 0.98307 0.98567 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -4.85 10.57 -51.44 -0.54 -5.39 16 3 C 0.46 7.35 7.95 71.23 0.57 7.92 16 4 O -0.53 -12.62 15.78 21.97 0.35 -12.27 16 5 C -0.08 -0.72 5.53 29.10 0.16 -0.56 16 6 C 0.07 1.16 4.44 -19.42 -0.09 1.07 16 7 C -0.19 -2.72 9.53 22.35 0.21 -2.51 16 8 C 0.25 5.25 7.27 84.72 0.62 5.87 16 9 Cl -0.01 -0.23 29.09 -2.72 -0.08 -0.31 16 10 N -0.56 -15.24 9.52 -183.28 -1.74 -16.98 16 11 C 0.46 12.40 7.49 133.64 1.00 13.40 16 12 N -0.70 -20.50 5.62 -344.36 -1.93 -22.43 16 13 C 0.14 4.90 5.68 86.38 0.49 5.39 16 14 C -0.11 -4.32 5.27 30.59 0.16 -4.16 16 15 C 0.03 1.49 4.97 29.85 0.15 1.64 16 16 C -0.54 -30.85 9.11 25.60 0.23 -30.61 16 17 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 18 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 19 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 20 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 21 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 C -0.15 -3.38 5.77 -21.04 -0.12 -3.50 16 25 C 0.27 6.61 12.80 88.35 1.13 7.74 16 26 N -0.44 -11.96 18.53 18.99 0.35 -11.61 16 27 H 0.07 0.68 8.13 -2.39 -0.02 0.66 16 28 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.67 8.13 -2.38 -0.02 0.65 16 30 H 0.18 -0.10 8.07 -2.38 -0.02 -0.12 16 31 H 0.13 1.03 7.36 -2.39 -0.02 1.02 16 32 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 33 H 0.41 11.36 7.31 -92.71 -0.68 10.68 16 34 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 37 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -74.35 375.20 5.30 -69.05 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 0.42 Total: 6.18 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 6.17 Total: 3.63 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -3.04 Total: -107.44 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.20 Total: -17.67 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.08 Total: -0.31 kcal Total: -74.35 5.30 -69.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426593.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.322 kcal (2) G-P(sol) polarization free energy of solvation -74.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds