Wall clock time and date at job start Tue Mar 31 2020 20:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34581 * 116.99797 * 2 1 4 4 O 1.21456 * 119.99910 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99891 * 179.97438 * 3 2 1 6 6 C 1.37630 * 125.10683 * 0.02830 * 5 3 2 7 7 C 1.33994 * 109.83560 * 179.97438 * 6 5 3 8 8 C 1.46599 * 107.04670 * 359.97438 * 7 6 5 9 9 C 1.39840 * 134.09760 * 179.97438 * 8 7 6 10 10 C 1.36969 * 118.26077 * 179.72456 * 9 8 7 11 11 C 1.39451 * 119.47430 * 0.56384 * 10 9 8 12 12 N 1.39144 * 119.32107 * 179.70472 * 11 10 9 13 13 C 1.38365 * 119.99797 * 353.86601 * 12 11 10 14 14 C 1.38979 * 120.00174 * 299.50502 * 13 12 11 15 15 H 1.08002 * 120.00254 * 154.29706 * 14 13 12 16 16 C 1.40851 * 119.99463 * 334.30066 * 14 13 12 17 17 N 1.30339 * 119.99723 * 165.95836 * 16 14 13 18 18 Si 1.86794 * 120.00311 * 345.95524 * 16 14 13 19 19 H 1.48504 * 109.47265 * 87.80539 * 18 16 14 20 20 H 1.48499 * 109.47061 * 207.80495 * 18 16 14 21 21 H 1.48493 * 109.47222 * 327.80583 * 18 16 14 22 22 C 1.41146 * 120.00499 * 119.50842 * 13 12 11 23 23 C 1.43200 * 120.00710 * 174.97586 * 22 13 12 24 24 N 9.57040 * 174.93308 * 44.58599 * 4 1 2 25 25 C 1.43206 * 119.99566 * 354.70221 * 22 13 12 26 26 N 8.72366 * 107.42747 * 338.25095 * 2 1 3 27 27 N 1.32192 * 121.35995 * 359.43669 * 11 10 9 28 28 C 1.32645 * 121.45455 * 0.27552 * 27 11 10 29 29 H 1.09003 * 109.47396 * 299.99395 * 1 2 3 30 30 H 1.08995 * 109.47368 * 59.99891 * 1 2 3 31 31 H 1.09003 * 109.46987 * 180.02562 * 1 2 3 32 32 H 1.08005 * 125.07752 * 359.97438 * 6 5 3 33 33 H 1.08003 * 126.47679 * 179.97438 * 7 6 5 34 34 H 1.07992 * 120.86599 * 0.02562 * 9 8 7 35 35 H 1.08001 * 120.26621 * 180.29981 * 10 9 8 36 36 H 0.96996 * 119.99801 * 173.85799 * 12 11 10 37 37 H 0.96995 * 119.99826 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0629 1.1992 0.0000 4 8 1.4014 2.2177 0.0005 5 7 3.4088 1.2697 0.0005 6 6 4.2582 0.1868 0.0005 7 6 5.5306 0.6069 0.0006 8 6 5.4992 2.0725 -0.0001 9 6 6.4825 3.0669 0.0001 10 6 6.0806 4.3763 -0.0064 11 6 4.7187 4.6761 -0.0011 12 7 4.3140 6.0074 -0.0015 13 6 5.2533 7.0160 0.1208 14 6 6.0538 7.0863 1.2548 15 1 7.0217 7.5627 1.2039 16 6 5.6027 6.5360 2.4703 17 7 6.4393 6.3525 3.4528 18 14 3.8055 6.0693 2.6745 19 1 3.5987 4.6772 2.2005 20 1 3.4289 6.1653 4.1077 21 1 2.9603 6.9942 1.8775 22 6 5.3986 7.9736 -0.9059 23 6 6.2932 9.0784 -0.7334 24 7 7.0027 9.9551 -0.5912 25 6 4.6556 7.8371 -2.1225 26 7 4.0647 7.7307 -3.0841 27 7 3.8042 3.7216 -0.0009 28 6 4.1423 2.4390 -0.0003 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.9458 -0.8471 0.0005 33 1 6.4126 -0.0165 0.0010 34 1 7.5312 2.8091 0.0005 35 1 6.8126 5.1704 -0.0114 36 1 3.3735 6.2283 -0.0878 37 1 6.1287 5.9732 4.2898 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169078546.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:44 Heat of formation + Delta-G solvation = 65.185704 kcal Electronic energy + Delta-G solvation = -27953.200310 eV Core-core repulsion = 23890.197244 eV Total energy + Delta-G solvation = -4063.003067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.096 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.27432 -41.43888 -40.24232 -38.27013 -37.75257 -36.90723 -36.59382 -35.51222 -34.24238 -32.27639 -32.08392 -29.22214 -29.01551 -28.57444 -25.34284 -24.26467 -23.40227 -22.51246 -21.79408 -20.76305 -19.79971 -19.14921 -18.74324 -18.48421 -18.25798 -17.92045 -17.37967 -16.78681 -16.35001 -16.17797 -15.25668 -15.04907 -14.91458 -14.80722 -14.58729 -14.56240 -14.32877 -14.27618 -14.03848 -13.87960 -13.55325 -13.46781 -13.32896 -13.17546 -13.08431 -12.88485 -12.82359 -12.68033 -12.24565 -12.16729 -12.04694 -11.75876 -11.32699 -10.94351 -10.48508 -9.90551 -9.49235 -9.44540 -8.56038 -7.22480 -0.18907 0.26499 0.32757 0.50490 1.09462 1.25382 1.30003 1.38054 1.78824 1.94501 1.97082 2.05037 2.20461 2.42952 2.48384 2.65616 2.91507 3.31865 3.50816 3.62353 3.67916 3.86650 4.05420 4.18963 4.24162 4.31451 4.39376 4.49895 4.63600 4.69616 4.77284 4.82852 4.95345 5.14237 5.27067 5.30902 5.41944 5.52037 5.65981 5.77278 5.94771 6.08192 6.34240 6.40936 6.68348 7.05424 7.13583 7.29370 7.52152 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.004080 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.799056 B = 6861.017350 C = 7170.093609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.346 6.346 3 C 0.647 3.353 4 O -0.545 6.545 5 N -0.442 5.442 6 C 0.026 3.974 7 C -0.124 4.124 8 C -0.190 4.190 9 C 0.009 3.991 10 C -0.216 4.216 11 C 0.423 3.577 12 N -0.675 5.675 13 C 0.352 3.648 14 C -0.345 4.345 15 H 0.114 0.886 16 C 0.073 3.927 17 N -0.728 5.728 18 Si 0.944 3.056 19 H -0.255 1.255 20 H -0.281 1.281 21 H -0.256 1.256 22 C -0.298 4.298 23 C 0.330 3.670 24 N -0.545 5.545 25 C 0.317 3.683 26 N -0.551 5.551 27 N -0.559 5.559 28 C 0.304 3.696 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.154 0.846 32 H 0.225 0.775 33 H 0.205 0.795 34 H 0.183 0.817 35 H 0.155 0.845 36 H 0.405 0.595 37 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.548 -22.480 3.368 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.259 6.259 3 C 0.403 3.597 4 O -0.430 6.430 5 N -0.155 5.155 6 C -0.088 4.088 7 C -0.146 4.146 8 C -0.198 4.198 9 C -0.016 4.016 10 C -0.240 4.240 11 C 0.185 3.815 12 N -0.306 5.306 13 C 0.249 3.751 14 C -0.372 4.372 15 H 0.132 0.868 16 C -0.159 4.159 17 N -0.346 5.346 18 Si 0.769 3.231 19 H -0.180 1.180 20 H -0.209 1.209 21 H -0.180 1.180 22 C -0.316 4.316 23 C 0.023 3.977 24 N -0.228 5.228 25 C 0.010 3.990 26 N -0.233 5.233 27 N -0.281 5.281 28 C 0.076 3.924 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.172 0.828 32 H 0.242 0.758 33 H 0.222 0.778 34 H 0.201 0.799 35 H 0.173 0.827 36 H 0.243 0.757 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.560 -20.876 2.386 21.501 hybrid contribution -0.922 0.173 0.504 1.065 sum -5.482 -20.703 2.890 21.611 Atomic orbital electron populations 1.23751 0.71507 1.06770 1.02873 1.86284 1.26553 1.27391 1.85650 1.18260 0.82456 0.83426 0.75545 1.91101 1.64087 1.36448 1.51374 1.41717 1.03173 1.06874 1.63773 1.22833 0.88408 0.92032 1.05492 1.22303 0.97927 0.90084 1.04325 1.20177 0.91206 0.97043 1.11403 1.20934 1.00743 0.89140 0.90790 1.21584 0.94340 0.99525 1.08535 1.17798 0.88907 0.83368 0.91448 1.42086 1.09942 1.01767 1.76816 1.16574 0.83990 0.83847 0.90691 1.20063 1.03423 1.22704 0.91036 0.86784 1.26801 1.03150 0.91206 0.94792 1.69346 1.38982 1.21490 1.04737 0.85700 0.77920 0.81614 0.77848 1.17963 1.20856 1.18027 1.12742 1.19738 1.04194 0.94946 1.24719 0.90721 0.90862 0.91431 1.81105 1.16624 1.14410 1.10671 1.25164 0.91069 0.91334 0.91455 1.80978 1.16627 1.12230 1.13478 1.65519 1.39164 0.99205 1.24166 1.17979 0.88470 0.84931 1.00989 0.91867 0.91901 0.82813 0.75825 0.77822 0.79941 0.82721 0.75662 0.87016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.56 113.37 1.20 1.82 16 2 O -0.35 -7.20 10.03 -54.90 -0.55 -7.75 16 3 C 0.65 19.67 8.50 129.79 1.10 20.78 16 4 O -0.54 -21.14 15.91 19.98 0.32 -20.82 16 5 N -0.44 -12.89 2.87 -595.79 -1.71 -14.60 16 6 C 0.03 0.48 10.84 82.82 0.90 1.38 16 7 C -0.12 -2.14 11.07 23.49 0.26 -1.88 16 8 C -0.19 -5.20 6.38 -20.14 -0.13 -5.33 16 9 C 0.01 0.25 10.17 22.36 0.23 0.48 16 10 C -0.22 -7.22 8.68 22.26 0.19 -7.02 16 11 C 0.42 16.31 5.12 133.15 0.68 16.99 16 12 N -0.67 -26.78 2.25 -184.60 -0.42 -27.19 16 13 C 0.35 14.16 4.43 39.00 0.17 14.33 16 14 C -0.35 -13.99 7.16 23.09 0.17 -13.82 16 15 H 0.11 4.94 7.42 -2.91 -0.02 4.92 16 16 C 0.07 2.89 5.19 85.55 0.44 3.33 16 17 N -0.73 -28.45 13.90 21.98 0.31 -28.15 16 18 Si 0.94 35.62 24.33 68.60 1.67 37.29 16 19 H -0.25 -10.40 5.48 99.48 0.54 -9.86 16 20 H -0.28 -10.28 7.11 99.48 0.71 -9.58 16 21 H -0.26 -9.84 6.71 99.48 0.67 -9.17 16 22 C -0.30 -12.69 5.88 -20.07 -0.12 -12.81 16 23 C 0.33 14.81 14.02 88.32 1.24 16.05 16 24 N -0.55 -25.65 18.54 19.01 0.35 -25.29 16 25 C 0.32 14.24 14.81 88.36 1.31 15.55 16 26 N -0.55 -26.12 18.52 18.98 0.35 -25.77 16 27 N -0.56 -22.73 8.92 -189.78 -1.69 -24.42 16 28 C 0.30 10.64 7.63 133.67 1.02 11.66 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.23 2.00 7.99 -2.91 -0.02 1.98 16 33 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.18 3.20 8.06 -2.91 -0.02 3.17 16 35 H 0.16 5.21 6.12 -2.91 -0.02 5.20 16 36 H 0.41 16.31 7.96 -92.71 -0.74 15.57 16 37 H 0.32 11.11 8.28 -92.71 -0.77 10.34 16 Total: -1.00 -65.94 343.33 7.54 -58.40 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.25 Total: 16.81 kcal Atomic # 6 Polarization: 52.84 SS G_CDS: 8.66 Total: 61.50 kcal Atomic # 7 Polarization: -142.62 SS G_CDS: -2.81 Total: -145.43 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.23 Total: -28.57 kcal Atomic # 14 Polarization: 35.62 SS G_CDS: 1.67 Total: 37.29 kcal Total: -65.94 7.54 -58.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169078546.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.583 kcal (2) G-P(sol) polarization free energy of solvation -65.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds