Wall clock time and date at job start Tue Mar 31 2020 20:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34768 * 117.00089 * 2 1 4 4 O 1.21523 * 119.99696 * 359.97438 * 3 2 1 5 5 C 1.47404 * 120.00163 * 179.97438 * 3 2 1 6 6 C 1.36561 * 125.91412 * 179.97438 * 5 3 2 7 7 N 1.36368 * 107.08600 * 180.02562 * 6 5 3 8 8 C 1.37355 * 107.35366 * 0.02562 * 7 6 5 9 9 C 1.41012 * 119.63215 * 179.97438 * 8 7 6 10 10 C 1.36189 * 119.52972 * 0.02562 * 9 8 7 11 11 C 1.40015 * 119.83053 * 359.97438 * 10 9 8 12 12 C 1.36094 * 120.23510 * 0.02562 * 11 10 9 13 13 N 1.38320 * 119.77123 * 179.97438 * 12 11 10 14 14 C 1.38356 * 120.00089 * 353.90904 * 13 12 11 15 15 C 1.38978 * 120.00372 * 300.19196 * 14 13 12 16 16 H 1.07995 * 119.99695 * 152.25234 * 15 14 13 17 17 C 1.40878 * 120.00041 * 332.25139 * 15 14 13 18 18 N 1.30317 * 120.00157 * 2.92656 * 17 15 14 19 19 Si 1.86802 * 120.00005 * 182.91878 * 17 15 14 20 20 H 1.48498 * 109.47060 * 60.00367 * 19 17 15 21 21 H 1.48503 * 109.47160 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47271 * 299.99997 * 19 17 15 23 23 C 1.41171 * 119.99582 * 120.19448 * 14 13 12 24 24 C 1.43202 * 119.99658 * 174.76101 * 23 14 13 25 25 N 9.07784 * 157.92090 * 170.38634 * 5 1 2 26 26 C 1.43202 * 120.00015 * 354.76008 * 23 14 13 27 27 N 8.60591 * 129.21462 * 332.60633 * 2 1 3 28 28 N 1.32296 * 108.34800 * 359.97438 * 8 7 6 29 29 H 1.08996 * 109.46802 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47100 * 300.00451 * 1 2 3 31 31 H 1.09001 * 109.46720 * 60.00552 * 1 2 3 32 32 H 1.08000 * 126.45683 * 0.06280 * 6 5 3 33 33 H 1.08006 * 120.23588 * 179.72372 * 9 8 7 34 34 H 1.08004 * 120.08251 * 179.97438 * 10 9 8 35 35 H 1.08001 * 119.88412 * 179.97438 * 11 10 9 36 36 H 0.97002 * 119.99692 * 173.91734 * 13 12 11 37 37 H 0.96999 * 120.00281 * 185.00894 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2199 -0.0005 5 6 3.5359 1.2779 0.0006 6 6 4.2779 2.4244 0.0001 7 7 5.5899 2.0524 0.0004 8 6 5.6265 0.6794 0.0003 9 6 6.8703 0.0151 0.0000 10 6 8.0207 0.7441 0.0002 11 6 7.9588 2.1429 0.0002 12 6 6.7538 2.7755 0.0006 13 7 6.7038 4.1578 0.0011 14 6 7.8695 4.8921 0.1285 15 6 8.6645 4.7436 1.2587 16 1 9.7272 4.9263 1.1992 17 6 8.0840 4.3549 2.4821 18 7 6.8116 4.0792 2.5411 19 14 9.1381 4.2343 4.0196 20 1 9.7389 5.5602 4.3130 21 1 8.2952 3.8078 5.1654 22 1 10.2181 3.2384 3.8025 23 6 8.2513 5.7923 -0.8897 24 6 9.3959 6.6338 -0.7092 25 7 10.3036 7.3015 -0.5666 26 6 7.4942 5.8639 -2.1031 27 7 6.8929 5.9200 -3.0678 28 7 4.3823 0.2296 0.0007 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.8974 3.4351 0.0003 33 1 6.9105 -1.0642 0.0044 34 1 8.9782 0.2445 0.0003 35 1 8.8705 2.7218 0.0008 36 1 5.8515 4.6123 -0.0877 37 1 6.3972 3.8824 3.3957 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:57 Heat of formation + Delta-G solvation = 73.163468 kcal Electronic energy + Delta-G solvation = -27734.471073 eV Core-core repulsion = 23671.813948 eV Total energy + Delta-G solvation = -4062.657125 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.096 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.66400 -40.13439 -38.70341 -36.55693 -36.23566 -35.34957 -34.92076 -34.15381 -32.97211 -30.70729 -29.76205 -27.96332 -27.82628 -27.34029 -24.48305 -22.95323 -22.46205 -21.23432 -20.39185 -19.13463 -18.55660 -17.60120 -17.36885 -16.86463 -16.58559 -16.42366 -16.36618 -15.58319 -15.41418 -14.81294 -14.74833 -14.00744 -13.89670 -13.52229 -13.33722 -13.07885 -12.80432 -12.50291 -12.21836 -12.14461 -12.09633 -11.95113 -11.82342 -11.75214 -11.67317 -11.58030 -11.21005 -11.14239 -10.84374 -10.79744 -10.76715 -10.74325 -10.21767 -10.12863 -9.73185 -8.60479 -8.24487 -7.84076 -6.76551 -5.71515 0.96110 1.48670 1.83047 2.20338 2.31962 2.58478 2.64236 2.71805 2.85044 3.25630 3.39027 3.58592 3.67321 3.85052 3.93053 3.99950 4.13876 4.25592 4.78842 4.90693 5.02413 5.04040 5.11553 5.26102 5.33224 5.36474 5.48422 5.57246 5.76417 5.97747 6.00705 6.06349 6.24859 6.40528 6.43178 6.62411 6.75691 6.78476 7.00361 7.02304 7.37027 7.50285 7.62381 7.83116 8.03456 8.05958 8.72449 8.90664 8.99987 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011627 B = 0.003957 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.528136 B = 7074.296811 C = 7949.596093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.339 6.339 3 C 0.558 3.442 4 O -0.507 6.507 5 C 0.007 3.993 6 C -0.007 4.007 7 N -0.378 5.378 8 C 0.279 3.721 9 C -0.176 4.176 10 C -0.025 4.025 11 C -0.244 4.244 12 C 0.438 3.562 13 N -0.646 5.646 14 C 0.379 3.621 15 C -0.376 4.376 16 H 0.117 0.883 17 C 0.072 3.928 18 N -0.732 5.732 19 Si 0.932 3.068 20 H -0.252 1.252 21 H -0.269 1.269 22 H -0.248 1.248 23 C -0.293 4.293 24 C 0.323 3.677 25 N -0.521 5.521 26 C 0.302 3.698 27 N -0.522 5.522 28 N -0.472 5.472 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.188 0.812 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.161 0.839 36 H 0.403 0.597 37 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.353 -10.077 4.778 11.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.254 6.254 3 C 0.402 3.598 4 O -0.395 6.395 5 C -0.122 4.122 6 C -0.142 4.142 7 N -0.054 5.054 8 C 0.033 3.967 9 C -0.199 4.199 10 C -0.050 4.050 11 C -0.271 4.271 12 C 0.231 3.769 13 N -0.266 5.266 14 C 0.276 3.724 15 C -0.404 4.404 16 H 0.134 0.866 17 C -0.159 4.159 18 N -0.351 5.351 19 Si 0.753 3.247 20 H -0.176 1.176 21 H -0.193 1.193 22 H -0.172 1.172 23 C -0.311 4.311 24 C 0.014 3.986 25 N -0.202 5.202 26 C -0.006 4.006 27 N -0.204 5.204 28 N -0.194 5.194 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.205 0.795 33 H 0.161 0.839 34 H 0.156 0.844 35 H 0.179 0.821 36 H 0.240 0.760 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.569 -9.510 3.641 11.161 hybrid contribution -0.425 0.878 1.153 1.510 sum -4.994 -8.632 4.794 11.065 Atomic orbital electron populations 1.23290 0.76419 1.03660 1.02496 1.86683 1.22898 1.31955 1.83863 1.19691 0.86569 0.81464 0.72112 1.90863 1.65881 1.36074 1.46718 1.19022 0.90742 0.90069 1.12402 1.22222 0.80838 1.00413 1.10776 1.42798 1.04849 1.09230 1.48518 1.20922 0.94579 0.78160 1.03013 1.19855 0.87100 1.00196 1.12723 1.20763 0.98035 0.92881 0.93294 1.20333 0.95373 0.94828 1.16591 1.17094 0.83812 0.82289 0.93686 1.41282 1.09721 1.00991 1.74654 1.16640 0.81033 0.85393 0.89345 1.20313 0.98313 1.30501 0.91234 0.86562 1.26531 0.95866 0.90695 1.02812 1.69421 1.11827 1.22942 1.30917 0.85860 0.80208 0.81295 0.77378 1.17582 1.19331 1.17194 1.12907 1.05182 1.17683 0.95305 1.24564 0.91063 0.90945 0.91982 1.81085 1.14351 1.14735 1.10038 1.25308 0.91985 0.91594 0.91667 1.81206 1.13406 1.13410 1.12336 1.70988 0.97118 1.27982 1.23267 0.88037 0.91900 0.91879 0.79468 0.83875 0.84413 0.82135 0.76022 0.88282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.42 16 2 O -0.34 -4.99 10.57 -40.68 -0.43 -5.42 16 3 C 0.56 9.24 7.96 34.46 0.27 9.51 16 4 O -0.51 -8.88 16.66 -19.28 -0.32 -9.20 16 5 C 0.01 0.13 6.97 -83.47 -0.58 -0.45 16 6 C -0.01 -0.12 10.98 -16.14 -0.18 -0.30 16 7 N -0.38 -6.41 2.95 -61.57 -0.18 -6.59 16 8 C 0.28 4.76 7.79 -155.98 -1.22 3.54 16 9 C -0.18 -2.50 10.10 -39.27 -0.40 -2.89 16 10 C -0.03 -0.33 10.05 -39.65 -0.40 -0.73 16 11 C -0.24 -3.76 8.69 -39.69 -0.34 -4.10 16 12 C 0.44 7.33 6.15 -152.67 -0.94 6.39 16 13 N -0.65 -11.01 3.26 -9.62 -0.03 -11.04 16 14 C 0.38 6.80 4.92 -83.53 -0.41 6.39 16 15 C -0.38 -6.55 6.51 -38.31 -0.25 -6.80 16 16 H 0.12 2.01 7.28 -52.49 -0.38 1.63 16 17 C 0.07 1.19 5.20 -17.20 -0.09 1.10 16 18 N -0.73 -12.56 10.92 55.60 0.61 -11.95 16 19 Si 0.93 13.36 29.57 -169.99 -5.03 8.34 16 20 H -0.25 -3.79 7.11 56.52 0.40 -3.39 16 21 H -0.27 -3.90 7.11 56.52 0.40 -3.49 16 22 H -0.25 -3.51 7.11 56.52 0.40 -3.11 16 23 C -0.29 -5.67 5.88 -104.93 -0.62 -6.29 16 24 C 0.32 6.65 14.05 -22.48 -0.32 6.33 16 25 N -0.52 -11.30 18.54 41.83 0.78 -10.53 16 26 C 0.30 6.25 14.83 -22.40 -0.33 5.92 16 27 N -0.52 -11.51 18.55 41.92 0.78 -10.74 16 28 N -0.47 -8.52 11.36 -9.39 -0.11 -8.63 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.19 2.82 7.77 -52.49 -0.41 2.41 16 33 H 0.14 1.70 8.06 -52.48 -0.42 1.27 16 34 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.16 2.45 6.00 -52.49 -0.31 2.14 16 36 H 0.40 6.74 8.14 -40.82 -0.33 6.41 16 37 H 0.30 4.98 8.29 -40.82 -0.34 4.64 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -25.31 352.37 -6.04 -31.35 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -2.68 Total: 10.05 kcal Atomic # 6 Polarization: 23.77 SS G_CDS: -4.73 Total: 19.05 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 1.84 Total: -59.47 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.75 Total: -14.62 kcal Atomic # 14 Polarization: 13.36 SS G_CDS: -5.03 Total: 8.34 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -25.31 -6.04 -31.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.510 kcal (2) G-P(sol) polarization free energy of solvation -25.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds