Wall clock time and date at job start Tue Mar 31 2020 20:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34768 * 117.00089 * 2 1 4 4 O 1.21523 * 119.99696 * 359.97438 * 3 2 1 5 5 C 1.47404 * 120.00163 * 179.97438 * 3 2 1 6 6 C 1.36561 * 125.91412 * 179.97438 * 5 3 2 7 7 N 1.36368 * 107.08600 * 180.02562 * 6 5 3 8 8 C 1.37355 * 107.35366 * 0.02562 * 7 6 5 9 9 C 1.41012 * 119.63215 * 179.97438 * 8 7 6 10 10 C 1.36189 * 119.52972 * 0.02562 * 9 8 7 11 11 C 1.40015 * 119.83053 * 359.97438 * 10 9 8 12 12 C 1.36094 * 120.23510 * 0.02562 * 11 10 9 13 13 N 1.38320 * 119.77123 * 179.97438 * 12 11 10 14 14 C 1.38356 * 120.00089 * 353.90904 * 13 12 11 15 15 C 1.38978 * 120.00372 * 300.19196 * 14 13 12 16 16 H 1.07995 * 119.99695 * 152.25234 * 15 14 13 17 17 C 1.40878 * 120.00041 * 332.25139 * 15 14 13 18 18 N 1.30317 * 120.00157 * 2.92656 * 17 15 14 19 19 Si 1.86802 * 120.00005 * 182.91878 * 17 15 14 20 20 H 1.48498 * 109.47060 * 60.00367 * 19 17 15 21 21 H 1.48503 * 109.47160 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47271 * 299.99997 * 19 17 15 23 23 C 1.41171 * 119.99582 * 120.19448 * 14 13 12 24 24 C 1.43202 * 119.99658 * 174.76101 * 23 14 13 25 25 N 9.07784 * 157.92090 * 170.38634 * 5 1 2 26 26 C 1.43202 * 120.00015 * 354.76008 * 23 14 13 27 27 N 8.60591 * 129.21462 * 332.60633 * 2 1 3 28 28 N 1.32296 * 108.34800 * 359.97438 * 8 7 6 29 29 H 1.08996 * 109.46802 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47100 * 300.00451 * 1 2 3 31 31 H 1.09001 * 109.46720 * 60.00552 * 1 2 3 32 32 H 1.08000 * 126.45683 * 0.06280 * 6 5 3 33 33 H 1.08006 * 120.23588 * 179.72372 * 9 8 7 34 34 H 1.08004 * 120.08251 * 179.97438 * 10 9 8 35 35 H 1.08001 * 119.88412 * 179.97438 * 11 10 9 36 36 H 0.97002 * 119.99692 * 173.91734 * 13 12 11 37 37 H 0.96999 * 120.00281 * 185.00894 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2199 -0.0005 5 6 3.5359 1.2779 0.0006 6 6 4.2779 2.4244 0.0001 7 7 5.5899 2.0524 0.0004 8 6 5.6265 0.6794 0.0003 9 6 6.8703 0.0151 0.0000 10 6 8.0207 0.7441 0.0002 11 6 7.9588 2.1429 0.0002 12 6 6.7538 2.7755 0.0006 13 7 6.7038 4.1578 0.0011 14 6 7.8695 4.8921 0.1285 15 6 8.6645 4.7436 1.2587 16 1 9.7272 4.9263 1.1992 17 6 8.0840 4.3549 2.4821 18 7 6.8116 4.0792 2.5411 19 14 9.1381 4.2343 4.0196 20 1 9.7389 5.5602 4.3130 21 1 8.2952 3.8078 5.1654 22 1 10.2181 3.2384 3.8025 23 6 8.2513 5.7923 -0.8897 24 6 9.3959 6.6338 -0.7092 25 7 10.3036 7.3015 -0.5666 26 6 7.4942 5.8639 -2.1031 27 7 6.8929 5.9200 -3.0678 28 7 4.3823 0.2296 0.0007 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.8974 3.4351 0.0003 33 1 6.9105 -1.0642 0.0044 34 1 8.9782 0.2445 0.0003 35 1 8.8705 2.7218 0.0008 36 1 5.8515 4.6123 -0.0877 37 1 6.3972 3.8824 3.3957 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:56 Heat of formation + Delta-G solvation = 62.882496 kcal Electronic energy + Delta-G solvation = -27734.916889 eV Core-core repulsion = 23671.813948 eV Total energy + Delta-G solvation = -4063.102941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.096 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.92020 -41.34169 -40.03147 -37.86387 -37.51248 -36.80843 -36.55884 -35.44792 -34.29366 -32.08827 -31.02261 -29.19283 -28.85665 -28.72077 -25.65906 -24.26811 -23.67254 -22.57696 -21.63191 -20.60986 -19.82677 -19.00065 -18.62616 -18.07467 -17.90647 -17.60678 -17.57650 -16.82895 -16.74566 -16.01361 -15.88342 -15.26596 -15.14429 -14.68250 -14.57848 -14.44420 -14.36441 -13.90945 -13.59835 -13.48517 -13.42925 -13.36747 -13.10277 -13.00085 -12.91396 -12.79516 -12.70657 -12.62186 -12.07158 -12.00594 -11.95121 -11.84401 -11.49119 -11.43348 -11.06203 -9.91742 -9.61904 -9.16366 -8.03855 -7.20311 -0.29487 0.25252 0.52137 0.93187 1.09788 1.40316 1.53092 1.56208 1.68988 2.00365 2.07450 2.10708 2.20165 2.26826 2.55486 2.64339 2.74963 3.05191 3.33448 3.60302 3.75880 3.89781 4.09365 4.17100 4.29055 4.33241 4.43887 4.49047 4.63487 4.65281 4.68553 4.83619 5.08132 5.18009 5.25212 5.35192 5.45865 5.57920 5.68001 5.79883 5.98809 6.12079 6.34609 6.53566 6.69487 6.77497 7.12876 7.30763 7.66488 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011627 B = 0.003957 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.528136 B = 7074.296811 C = 7949.596093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.348 6.348 3 C 0.559 3.441 4 O -0.525 6.525 5 C -0.007 4.007 6 C -0.017 4.017 7 N -0.380 5.380 8 C 0.264 3.736 9 C -0.175 4.175 10 C -0.014 4.014 11 C -0.243 4.243 12 C 0.417 3.583 13 N -0.649 5.649 14 C 0.380 3.620 15 C -0.365 4.365 16 H 0.120 0.880 17 C 0.052 3.948 18 N -0.737 5.737 19 Si 0.982 3.018 20 H -0.262 1.262 21 H -0.269 1.269 22 H -0.239 1.239 23 C -0.306 4.306 24 C 0.331 3.669 25 N -0.547 5.547 26 C 0.312 3.688 27 N -0.555 5.555 28 N -0.493 5.493 29 H 0.136 0.864 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.195 0.805 33 H 0.169 0.831 34 H 0.181 0.819 35 H 0.163 0.837 36 H 0.400 0.600 37 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.585 -11.889 6.089 13.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C 0.403 3.597 4 O -0.414 6.414 5 C -0.136 4.136 6 C -0.152 4.152 7 N -0.055 5.055 8 C 0.018 3.982 9 C -0.198 4.198 10 C -0.038 4.038 11 C -0.270 4.270 12 C 0.211 3.789 13 N -0.270 5.270 14 C 0.275 3.725 15 C -0.392 4.392 16 H 0.138 0.862 17 C -0.178 4.178 18 N -0.356 5.356 19 Si 0.801 3.199 20 H -0.186 1.186 21 H -0.193 1.193 22 H -0.162 1.162 23 C -0.325 4.325 24 C 0.023 3.977 25 N -0.230 5.230 26 C 0.006 3.994 27 N -0.239 5.239 28 N -0.214 5.214 29 H 0.154 0.846 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.212 0.788 33 H 0.187 0.813 34 H 0.198 0.802 35 H 0.180 0.820 36 H 0.237 0.763 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.821 -11.356 4.938 12.959 hybrid contribution -0.711 1.310 0.854 1.718 sum -4.532 -10.046 5.792 12.450 Atomic orbital electron populations 1.23679 0.73860 1.06105 1.02933 1.86661 1.25445 1.30902 1.83299 1.19647 0.86394 0.81813 0.71799 1.90841 1.66172 1.36674 1.47753 1.19268 0.91359 0.90271 1.12694 1.22408 0.81058 1.00754 1.10995 1.42829 1.04845 1.09365 1.48478 1.21512 0.95301 0.78395 1.02990 1.20293 0.86165 1.01567 1.11761 1.21182 0.99545 0.91750 0.91350 1.20644 0.94843 0.96153 1.15334 1.17307 0.84234 0.82124 0.95233 1.41176 1.09281 1.01250 1.75272 1.16581 0.81420 0.85403 0.89055 1.20534 0.98462 1.28933 0.91275 0.86235 1.27051 0.96412 0.90258 1.04119 1.69453 1.12551 1.21875 1.31687 0.85124 0.79128 0.80816 0.74836 1.18622 1.19328 1.16168 1.12901 1.05347 1.18763 0.95478 1.24694 0.90951 0.90607 0.91407 1.81080 1.15305 1.15717 1.10853 1.25485 0.91517 0.90846 0.91546 1.81198 1.14613 1.14726 1.13315 1.70953 0.97696 1.28403 1.24375 0.84623 0.91442 0.91512 0.78782 0.81337 0.80209 0.81965 0.76284 0.87783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.57 113.37 1.20 1.70 16 2 O -0.35 -10.06 10.57 -56.79 -0.60 -10.66 16 3 C 0.56 18.61 7.96 70.24 0.56 19.17 16 4 O -0.52 -18.54 16.66 19.76 0.33 -18.21 16 5 C -0.01 -0.23 6.97 40.72 0.28 0.05 16 6 C -0.02 -0.58 10.98 83.60 0.92 0.34 16 7 N -0.38 -12.69 2.95 -348.71 -1.03 -13.72 16 8 C 0.26 8.69 7.79 134.11 1.05 9.74 16 9 C -0.18 -4.50 10.10 22.47 0.23 -4.27 16 10 C -0.01 -0.32 10.05 22.22 0.22 -0.10 16 11 C -0.24 -6.96 8.69 22.20 0.19 -6.76 16 12 C 0.42 13.55 6.15 131.14 0.81 14.36 16 13 N -0.65 -21.90 3.26 -184.35 -0.60 -22.51 16 14 C 0.38 13.36 4.92 39.01 0.19 13.55 16 15 C -0.36 -12.15 6.51 23.09 0.15 -12.00 16 16 H 0.12 3.91 7.28 -2.91 -0.02 3.89 16 17 C 0.05 1.61 5.20 85.56 0.44 2.06 16 18 N -0.74 -24.20 10.92 21.99 0.24 -23.96 16 19 Si 0.98 25.23 29.57 68.60 2.03 27.26 16 20 H -0.26 -7.19 7.11 99.48 0.71 -6.48 16 21 H -0.27 -6.92 7.11 99.48 0.71 -6.21 16 22 H -0.24 -5.79 7.11 99.48 0.71 -5.08 16 23 C -0.31 -11.83 5.88 -20.07 -0.12 -11.95 16 24 C 0.33 13.54 14.05 88.33 1.24 14.78 16 25 N -0.55 -23.60 18.54 19.00 0.35 -23.25 16 26 C 0.31 13.05 14.83 88.31 1.31 14.36 16 27 N -0.56 -24.87 18.55 19.03 0.35 -24.51 16 28 N -0.49 -17.56 11.36 -183.61 -2.09 -19.65 16 29 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.20 6.04 7.77 -2.91 -0.02 6.02 16 33 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 34 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.16 4.59 6.00 -2.91 -0.02 4.57 16 36 H 0.40 13.59 8.14 -92.71 -0.75 12.83 16 37 H 0.31 9.62 8.29 -92.71 -0.77 8.85 16 Total: -1.00 -54.04 352.37 8.09 -45.95 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.43 Total: 28.23 kcal Atomic # 6 Polarization: 46.35 SS G_CDS: 8.67 Total: 55.03 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -2.77 Total: -127.59 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.27 Total: -28.88 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: 2.03 Total: 27.26 kcal Total: -54.04 8.09 -45.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.828 kcal (2) G-P(sol) polarization free energy of solvation -54.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds