Wall clock time and date at job start Tue Mar 31 2020 20:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.47628 * 2 1 4 4 C 1.34741 * 117.00132 * 180.02562 * 3 2 1 5 5 O 1.21506 * 120.00305 * 0.02562 * 4 3 2 6 6 C 1.47477 * 119.99962 * 180.02562 * 4 3 2 7 7 C 1.39853 * 120.40402 * 359.97438 * 6 4 3 8 8 N 1.31538 * 121.00323 * 180.02562 * 7 6 4 9 9 C 1.32537 * 121.95001 * 0.02562 * 8 7 6 10 10 N 1.38149 * 119.65324 * 179.97438 * 9 8 7 11 11 C 1.38479 * 119.99991 * 357.97674 * 10 9 8 12 12 C 1.38935 * 120.00060 * 299.25888 * 11 10 9 13 13 H 1.07992 * 119.99872 * 150.72114 * 12 11 10 14 14 C 1.40878 * 119.99550 * 330.72028 * 12 11 10 15 15 N 1.30316 * 120.00453 * 2.91294 * 14 12 11 16 16 Si 1.86806 * 119.99551 * 182.91185 * 14 12 11 17 17 H 1.48505 * 109.46871 * 90.00041 * 16 14 12 18 18 H 1.48497 * 109.47115 * 209.99588 * 16 14 12 19 19 H 1.48493 * 109.47265 * 330.00098 * 16 14 12 20 20 C 1.41116 * 119.99896 * 119.25153 * 11 10 9 21 21 C 1.43201 * 120.00007 * 185.16864 * 20 11 10 22 22 N 9.31313 * 127.55235 * 188.05091 * 3 1 2 23 23 C 1.43196 * 120.00277 * 5.17559 * 20 11 10 24 24 N 8.83774 * 147.79699 * 218.16747 * 3 1 2 25 25 C 1.40744 * 120.69422 * 0.02562 * 9 8 7 26 26 C 1.43205 * 120.53194 * 179.97438 * 25 9 8 27 27 N 8.34631 * 144.33584 * 359.95288 * 2 1 3 28 28 C 1.39529 * 118.93762 * 0.22685 * 25 9 8 29 29 H 1.09001 * 109.46645 * 299.99866 * 1 2 3 30 30 H 1.09001 * 109.46968 * 59.99473 * 1 2 3 31 31 H 1.09000 * 109.47178 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47159 * 240.00172 * 2 1 3 33 33 H 1.09001 * 109.46968 * 120.00527 * 2 1 3 34 34 H 1.08008 * 119.50077 * 0.03336 * 7 6 4 35 35 H 0.97001 * 120.00082 * 177.98558 * 10 9 8 36 36 H 0.96997 * 119.99735 * 185.01163 * 15 14 12 37 37 H 1.07996 * 120.88614 * 179.72374 * 28 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3499 1.5454 -0.0005 5 8 4.0901 0.5818 -0.0015 6 6 3.9137 2.9081 0.0000 7 6 3.0696 4.0233 0.0005 8 7 3.5597 5.2439 0.0005 9 6 4.8647 5.4758 -0.0005 10 7 5.3276 6.7774 -0.0010 11 6 4.4304 7.8314 -0.0428 12 6 3.5669 7.9662 -1.1228 13 1 2.6027 8.4337 -0.9882 14 6 3.9491 7.4930 -2.3935 15 7 5.0882 6.8782 -2.5444 16 14 2.8230 7.7468 -3.8622 17 1 3.1497 9.0380 -4.5191 18 1 3.0139 6.6369 -4.8300 19 1 1.4103 7.7676 -3.4051 20 6 4.3930 8.7684 1.0117 21 6 3.3930 9.7933 1.0237 22 7 2.5991 10.6060 1.0341 23 6 5.3552 8.6946 2.0696 24 7 6.1175 8.6351 2.9105 25 6 5.7837 4.4099 -0.0022 26 6 7.1930 4.6644 -0.0038 27 7 8.3109 4.8662 -0.0040 28 6 5.2998 3.1012 -0.0076 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.9991 3.8800 0.0011 35 1 6.2811 6.9531 0.0278 36 1 5.3846 6.6169 -3.4302 37 1 5.9768 2.2598 -0.0134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:14 Heat of formation + Delta-G solvation = 38.429445 kcal Electronic energy + Delta-G solvation = -27265.155383 eV Core-core repulsion = 23200.992078 eV Total energy + Delta-G solvation = -4064.163305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.096 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.81190 -39.89469 -37.52364 -36.56349 -36.36635 -35.39959 -34.83462 -33.92830 -32.50183 -32.14210 -31.43919 -29.38838 -27.26918 -24.77482 -24.58930 -23.10935 -21.88168 -21.15581 -19.32714 -19.15043 -18.14994 -17.54433 -17.03620 -16.61278 -16.53215 -16.26400 -15.94303 -15.09400 -14.64318 -14.15365 -13.97992 -13.78953 -13.66608 -13.04844 -13.00431 -12.98180 -12.88256 -12.81591 -12.69631 -12.41505 -12.28056 -12.11698 -11.98254 -11.81914 -11.78260 -11.65784 -11.62907 -11.17911 -11.05005 -10.90987 -10.69995 -10.65232 -10.32426 -10.17584 -9.75257 -9.35516 -8.45576 -7.93722 -7.37200 -5.52769 0.74964 0.97105 1.96883 2.52097 2.61623 2.64930 2.72735 2.79363 2.87867 3.25250 3.30984 3.35756 3.73261 3.94788 4.00075 4.06697 4.14043 4.21560 4.56422 4.69868 4.74637 4.82651 4.84524 5.03905 5.05678 5.07747 5.32168 5.44901 5.48185 5.57592 5.73110 5.80422 5.95440 6.11424 6.18182 6.32648 6.38102 6.89858 7.03894 7.29438 7.58225 7.63879 7.69827 7.76413 7.97531 8.32934 8.81819 9.01995 9.09731 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009339 B = 0.004068 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.346487 B = 6881.477690 C = 7630.880945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.355 6.355 4 C 0.529 3.471 5 O -0.521 6.521 6 C -0.269 4.269 7 C 0.245 3.755 8 N -0.513 5.513 9 C 0.517 3.483 10 N -0.607 5.607 11 C 0.372 3.628 12 C -0.345 4.345 13 H 0.116 0.884 14 C 0.072 3.928 15 N -0.741 5.741 16 Si 0.932 3.068 17 H -0.258 1.258 18 H -0.268 1.268 19 H -0.246 1.246 20 C -0.298 4.298 21 C 0.326 3.674 22 N -0.525 5.525 23 C 0.302 3.698 24 N -0.526 5.526 25 C -0.166 4.166 26 C 0.268 3.732 27 N -0.423 5.423 28 C 0.081 3.919 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.175 0.825 35 H 0.410 0.590 36 H 0.304 0.696 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.284 -14.132 -5.176 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.272 6.272 4 C 0.375 3.625 5 O -0.411 6.411 6 C -0.276 4.276 7 C 0.078 3.922 8 N -0.228 5.228 9 C 0.275 3.725 10 N -0.224 5.224 11 C 0.270 3.730 12 C -0.372 4.372 13 H 0.134 0.866 14 C -0.158 4.158 15 N -0.361 5.361 16 Si 0.753 3.247 17 H -0.182 1.182 18 H -0.192 1.192 19 H -0.169 1.169 20 C -0.316 4.316 21 C 0.018 3.982 22 N -0.207 5.207 23 C -0.006 4.006 24 N -0.208 5.208 25 C -0.178 4.178 26 C -0.047 4.047 27 N -0.099 5.099 28 C 0.054 3.946 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.191 0.809 35 H 0.249 0.751 36 H 0.116 0.884 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.850 -12.199 -4.005 14.110 hybrid contribution 0.343 -1.176 -1.123 1.662 sum -5.507 -13.376 -5.128 15.347 Atomic orbital electron populations 1.21814 0.92627 1.02851 1.03760 1.22995 0.95258 0.80114 1.02557 1.86534 1.23877 1.32235 1.84531 1.20688 0.80374 0.89281 0.72202 1.90822 1.60379 1.42498 1.47413 1.19453 0.93844 0.91526 1.22777 1.23144 1.00478 0.85246 0.83323 1.67621 1.11223 1.23222 1.20748 1.18063 0.88115 0.84058 0.82263 1.41629 1.09370 1.01641 1.69734 1.16775 0.84329 0.82847 0.89081 1.20209 1.02998 1.23592 0.90438 0.86608 1.26579 0.95940 0.90777 1.02485 1.69430 1.17706 1.20695 1.28271 0.85817 0.81072 0.79778 0.77995 1.18183 1.19192 1.16891 1.12827 1.07341 1.08537 1.02921 1.24546 0.91167 0.90812 0.91684 1.81077 1.14387 1.14099 1.11153 1.25268 0.91810 0.91978 0.91499 1.81126 1.14961 1.11954 1.12734 1.15937 0.85541 0.93513 1.22777 1.25125 0.92094 0.94366 0.93127 1.81235 1.11585 1.06486 1.10593 1.21272 0.93935 0.94937 0.84504 0.91297 0.91336 0.90412 0.91289 0.91256 0.80851 0.75073 0.88393 0.83206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.16 0.38 -0.53 16 2 C 0.06 0.55 6.20 37.16 0.23 0.78 16 3 O -0.35 -3.84 9.47 -40.60 -0.38 -4.23 16 4 C 0.53 6.70 7.90 34.49 0.27 6.97 16 5 O -0.52 -7.68 16.19 -19.27 -0.31 -8.00 16 6 C -0.27 -3.41 5.88 -104.89 -0.62 -4.03 16 7 C 0.25 3.14 10.77 -17.07 -0.18 2.95 16 8 N -0.51 -8.13 8.87 -11.84 -0.10 -8.23 16 9 C 0.52 8.56 6.25 -155.12 -0.97 7.59 16 10 N -0.61 -10.97 3.16 -9.54 -0.03 -11.00 16 11 C 0.37 7.21 5.41 -83.51 -0.45 6.76 16 12 C -0.34 -6.50 7.54 -38.33 -0.29 -6.79 16 13 H 0.12 2.22 7.18 -52.49 -0.38 1.84 16 14 C 0.07 1.25 5.34 -17.20 -0.09 1.16 16 15 N -0.74 -13.02 11.12 55.60 0.62 -12.41 16 16 Si 0.93 13.88 29.57 -169.99 -5.03 8.85 16 17 H -0.26 -3.94 7.11 56.52 0.40 -3.54 16 18 H -0.27 -3.92 7.11 56.52 0.40 -3.52 16 19 H -0.25 -3.71 7.11 56.52 0.40 -3.31 16 20 C -0.30 -6.18 5.88 -104.96 -0.62 -6.80 16 21 C 0.33 7.09 14.00 -22.47 -0.31 6.77 16 22 N -0.53 -11.89 18.54 41.84 0.78 -11.11 16 23 C 0.30 6.57 14.81 -22.46 -0.33 6.24 16 24 N -0.53 -12.04 18.54 41.86 0.78 -11.27 16 25 C -0.17 -2.50 5.76 -106.54 -0.61 -3.11 16 26 C 0.27 4.35 14.10 -22.47 -0.32 4.04 16 27 N -0.42 -7.52 18.54 41.84 0.78 -6.74 16 28 C 0.08 1.06 9.43 -38.46 -0.36 0.70 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.17 1.74 7.60 -52.48 -0.40 1.35 16 35 H 0.41 7.49 7.62 -40.82 -0.31 7.18 16 36 H 0.30 4.92 8.29 -40.82 -0.34 4.59 16 37 H 0.15 1.76 7.72 -52.49 -0.41 1.36 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -25.39 363.99 -4.44 -29.84 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -2.74 Total: 6.13 kcal Atomic # 6 Polarization: 26.96 SS G_CDS: -4.28 Total: 22.68 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: 2.81 Total: -60.77 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.70 Total: -12.22 kcal Atomic # 14 Polarization: 13.88 SS G_CDS: -5.03 Total: 8.85 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -25.39 -4.44 -29.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.268 kcal (2) G-P(sol) polarization free energy of solvation -25.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds