Wall clock time and date at job start Tue Mar 31 2020 20:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.47628 * 2 1 4 4 C 1.34741 * 117.00132 * 180.02562 * 3 2 1 5 5 O 1.21506 * 120.00305 * 0.02562 * 4 3 2 6 6 C 1.47477 * 119.99962 * 180.02562 * 4 3 2 7 7 C 1.39853 * 120.40402 * 359.97438 * 6 4 3 8 8 N 1.31538 * 121.00323 * 180.02562 * 7 6 4 9 9 C 1.32537 * 121.95001 * 0.02562 * 8 7 6 10 10 N 1.38149 * 119.65324 * 179.97438 * 9 8 7 11 11 C 1.38479 * 119.99991 * 357.97674 * 10 9 8 12 12 C 1.38935 * 120.00060 * 299.25888 * 11 10 9 13 13 H 1.07992 * 119.99872 * 150.72114 * 12 11 10 14 14 C 1.40878 * 119.99550 * 330.72028 * 12 11 10 15 15 N 1.30316 * 120.00453 * 2.91294 * 14 12 11 16 16 Si 1.86806 * 119.99551 * 182.91185 * 14 12 11 17 17 H 1.48505 * 109.46871 * 90.00041 * 16 14 12 18 18 H 1.48497 * 109.47115 * 209.99588 * 16 14 12 19 19 H 1.48493 * 109.47265 * 330.00098 * 16 14 12 20 20 C 1.41116 * 119.99896 * 119.25153 * 11 10 9 21 21 C 1.43201 * 120.00007 * 185.16864 * 20 11 10 22 22 N 9.31313 * 127.55235 * 188.05091 * 3 1 2 23 23 C 1.43196 * 120.00277 * 5.17559 * 20 11 10 24 24 N 8.83774 * 147.79699 * 218.16747 * 3 1 2 25 25 C 1.40744 * 120.69422 * 0.02562 * 9 8 7 26 26 C 1.43205 * 120.53194 * 179.97438 * 25 9 8 27 27 N 8.34631 * 144.33584 * 359.95288 * 2 1 3 28 28 C 1.39529 * 118.93762 * 0.22685 * 25 9 8 29 29 H 1.09001 * 109.46645 * 299.99866 * 1 2 3 30 30 H 1.09001 * 109.46968 * 59.99473 * 1 2 3 31 31 H 1.09000 * 109.47178 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47159 * 240.00172 * 2 1 3 33 33 H 1.09001 * 109.46968 * 120.00527 * 2 1 3 34 34 H 1.08008 * 119.50077 * 0.03336 * 7 6 4 35 35 H 0.97001 * 120.00082 * 177.98558 * 10 9 8 36 36 H 0.96997 * 119.99735 * 185.01163 * 15 14 12 37 37 H 1.07996 * 120.88614 * 179.72374 * 28 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3499 1.5454 -0.0005 5 8 4.0901 0.5818 -0.0015 6 6 3.9137 2.9081 0.0000 7 6 3.0696 4.0233 0.0005 8 7 3.5597 5.2439 0.0005 9 6 4.8647 5.4758 -0.0005 10 7 5.3276 6.7774 -0.0010 11 6 4.4304 7.8314 -0.0428 12 6 3.5669 7.9662 -1.1228 13 1 2.6027 8.4337 -0.9882 14 6 3.9491 7.4930 -2.3935 15 7 5.0882 6.8782 -2.5444 16 14 2.8230 7.7468 -3.8622 17 1 3.1497 9.0380 -4.5191 18 1 3.0139 6.6369 -4.8300 19 1 1.4103 7.7676 -3.4051 20 6 4.3930 8.7684 1.0117 21 6 3.3930 9.7933 1.0237 22 7 2.5991 10.6060 1.0341 23 6 5.3552 8.6946 2.0696 24 7 6.1175 8.6351 2.9105 25 6 5.7837 4.4099 -0.0022 26 6 7.1930 4.6644 -0.0038 27 7 8.3109 4.8662 -0.0040 28 6 5.2998 3.1012 -0.0076 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.9991 3.8800 0.0011 35 1 6.2811 6.9531 0.0278 36 1 5.3846 6.6169 -3.4302 37 1 5.9768 2.2598 -0.0134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:13 Heat of formation + Delta-G solvation = 27.776679 kcal Electronic energy + Delta-G solvation = -27265.617322 eV Core-core repulsion = 23200.992078 eV Total energy + Delta-G solvation = -4064.625244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.096 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.92876 -40.96654 -38.89907 -37.68817 -37.54075 -37.01203 -36.54875 -35.30636 -33.67666 -33.22587 -32.39268 -30.64865 -28.80190 -25.85290 -25.72673 -24.01759 -23.02275 -22.35811 -20.79317 -20.29191 -19.34984 -19.03666 -18.17641 -17.87710 -17.46203 -17.39396 -17.16449 -16.34971 -15.79388 -15.25460 -15.12654 -14.91364 -14.64076 -14.62493 -14.40318 -14.15408 -14.12143 -14.05627 -13.89513 -13.63789 -13.48199 -13.43697 -13.40052 -13.33773 -13.02209 -12.83150 -12.72944 -12.70138 -12.39761 -12.09158 -11.74637 -11.66201 -11.49085 -11.39246 -10.93849 -10.51984 -9.88315 -9.29858 -8.72862 -7.09649 -0.40484 -0.14829 0.57331 1.42050 1.45810 1.49707 1.57648 1.59837 1.74917 1.98094 2.03046 2.05804 2.11386 2.21832 2.52228 2.65527 2.80378 2.93611 3.35027 3.47308 3.73203 3.77156 3.82554 3.91546 4.15632 4.21537 4.27546 4.47299 4.52553 4.65765 4.70956 4.82836 5.03168 5.06787 5.21016 5.26305 5.40435 5.53356 5.63553 5.89128 6.13857 6.25093 6.39081 6.54981 6.77948 7.07698 7.14860 7.33996 7.72432 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009339 B = 0.004068 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.346487 B = 6881.477690 C = 7630.880945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 O -0.352 6.352 4 C 0.535 3.465 5 O -0.542 6.542 6 C -0.259 4.259 7 C 0.254 3.746 8 N -0.533 5.533 9 C 0.506 3.494 10 N -0.616 5.616 11 C 0.368 3.632 12 C -0.337 4.337 13 H 0.112 0.888 14 C 0.050 3.950 15 N -0.742 5.742 16 Si 0.984 3.016 17 H -0.262 1.262 18 H -0.258 1.258 19 H -0.247 1.247 20 C -0.316 4.316 21 C 0.332 3.668 22 N -0.550 5.550 23 C 0.311 3.689 24 N -0.557 5.557 25 C -0.171 4.171 26 C 0.283 3.717 27 N -0.454 5.454 28 C 0.091 3.909 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.204 0.796 35 H 0.406 0.594 36 H 0.313 0.687 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.933 -15.992 -6.679 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 O -0.269 6.269 4 C 0.381 3.619 5 O -0.434 6.434 6 C -0.266 4.266 7 C 0.088 3.912 8 N -0.249 5.249 9 C 0.266 3.734 10 N -0.233 5.233 11 C 0.265 3.735 12 C -0.363 4.363 13 H 0.130 0.870 14 C -0.179 4.179 15 N -0.361 5.361 16 Si 0.802 3.198 17 H -0.187 1.187 18 H -0.182 1.182 19 H -0.170 1.170 20 C -0.335 4.335 21 C 0.025 3.975 22 N -0.233 5.233 23 C 0.005 3.995 24 N -0.240 5.240 25 C -0.183 4.183 26 C -0.032 4.032 27 N -0.131 5.131 28 C 0.064 3.936 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.220 0.780 35 H 0.244 0.756 36 H 0.126 0.874 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.512 -14.101 -5.497 16.897 hybrid contribution 0.767 -0.806 -0.773 1.355 sum -6.745 -14.907 -6.271 17.523 Atomic orbital electron populations 1.21834 0.90540 1.04245 1.03871 1.23304 0.96860 0.78817 1.02741 1.86530 1.22537 1.33897 1.83899 1.20564 0.80938 0.88696 0.71654 1.90823 1.61065 1.43064 1.48429 1.19526 0.93640 0.91880 1.21514 1.23590 1.01760 0.84216 0.81629 1.67646 1.10897 1.24696 1.21626 1.18189 0.88775 0.83669 0.82771 1.41546 1.08836 1.01945 1.71014 1.16737 0.84946 0.83099 0.88706 1.20382 1.02532 1.22477 0.90936 0.87027 1.27112 0.96773 0.90541 1.03494 1.69436 1.17876 1.19431 1.29361 0.85073 0.79493 0.79590 0.75597 1.18681 1.18223 1.16982 1.12881 1.07574 1.09407 1.03611 1.24694 0.91000 0.90636 0.91162 1.81061 1.15322 1.14925 1.11983 1.25422 0.91552 0.91289 0.91246 1.81110 1.16070 1.13095 1.13719 1.15914 0.84638 0.93925 1.23810 1.25281 0.92210 0.93457 0.92211 1.81240 1.12544 1.07458 1.11898 1.21431 0.94544 0.94473 0.83202 0.91207 0.91161 0.88399 0.91120 0.91163 0.77970 0.75622 0.87419 0.81761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.29 71.98 0.74 -0.60 16 2 C 0.06 0.81 6.20 71.98 0.45 1.26 16 3 O -0.35 -6.68 9.47 -56.51 -0.54 -7.21 16 4 C 0.53 12.27 7.90 70.26 0.55 12.82 16 5 O -0.54 -14.88 16.19 19.82 0.32 -14.56 16 6 C -0.26 -5.98 5.88 -20.04 -0.12 -6.10 16 7 C 0.25 5.88 10.77 85.13 0.92 6.79 16 8 N -0.53 -16.07 8.87 -191.37 -1.70 -17.77 16 9 C 0.51 16.35 6.25 133.71 0.84 17.18 16 10 N -0.62 -22.19 3.16 -184.09 -0.58 -22.77 16 11 C 0.37 14.22 5.41 38.97 0.21 14.43 16 12 C -0.34 -12.38 7.54 23.08 0.17 -12.21 16 13 H 0.11 4.19 7.18 -2.91 -0.02 4.17 16 14 C 0.05 1.66 5.34 85.56 0.46 2.12 16 15 N -0.74 -24.89 11.12 21.99 0.24 -24.65 16 16 Si 0.98 26.40 29.57 68.60 2.03 28.43 16 17 H -0.26 -7.28 7.11 99.48 0.71 -6.57 16 18 H -0.26 -6.57 7.11 99.48 0.71 -5.86 16 19 H -0.25 -6.67 7.11 99.48 0.71 -5.96 16 20 C -0.32 -13.25 5.88 -20.08 -0.12 -13.36 16 21 C 0.33 14.55 14.00 88.33 1.24 15.79 16 22 N -0.55 -25.02 18.54 19.01 0.35 -24.67 16 23 C 0.31 13.79 14.81 88.33 1.31 15.09 16 24 N -0.56 -26.02 18.54 19.01 0.35 -25.67 16 25 C -0.17 -4.98 5.76 -21.11 -0.12 -5.11 16 26 C 0.28 9.10 14.10 88.33 1.25 10.35 16 27 N -0.45 -16.20 18.54 19.01 0.35 -15.85 16 28 C 0.09 2.22 9.43 23.00 0.22 2.44 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.20 3.40 7.60 -2.91 -0.02 3.38 16 35 H 0.41 15.02 7.62 -92.71 -0.71 14.31 16 36 H 0.31 9.51 8.29 -92.71 -0.77 8.74 16 37 H 0.16 3.55 7.72 -2.91 -0.02 3.53 16 Total: -1.00 -53.66 363.99 9.31 -44.36 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.48 Total: 19.46 kcal Atomic # 6 Polarization: 52.91 SS G_CDS: 7.99 Total: 60.89 kcal Atomic # 7 Polarization: -130.39 SS G_CDS: -0.98 Total: -131.37 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.21 Total: -21.77 kcal Atomic # 14 Polarization: 26.40 SS G_CDS: 2.03 Total: 28.43 kcal Total: -53.66 9.31 -44.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.135 kcal (2) G-P(sol) polarization free energy of solvation -53.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds