Wall clock time and date at job start Tue Mar 31 2020 20:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34883 * 117.00075 * 2 1 4 4 O 1.21602 * 119.99607 * 359.72281 * 3 2 1 5 5 C 1.46682 * 119.99811 * 180.02562 * 3 2 1 6 6 C 1.36071 * 125.48165 * 179.44381 * 5 3 2 7 7 C 1.41308 * 107.61203 * 179.84486 * 6 5 3 8 8 C 1.40469 * 133.50112 * 180.12945 * 7 6 5 9 9 C 1.36657 * 118.32445 * 180.30475 * 8 7 6 10 10 C 1.39699 * 119.58103 * 0.02562 * 9 8 7 11 11 N 1.38846 * 119.30811 * 180.02562 * 10 9 8 12 12 C 1.38402 * 120.00374 * 6.51984 * 11 10 9 13 13 C 1.38961 * 119.99629 * 61.66135 * 12 11 10 14 14 H 1.07998 * 119.99833 * 202.15932 * 13 12 11 15 15 C 1.40862 * 120.00346 * 22.15808 * 13 12 11 16 16 N 1.30325 * 119.99711 * 9.84099 * 15 13 12 17 17 Si 1.86796 * 120.00102 * 189.84820 * 15 13 12 18 18 H 1.48501 * 109.47425 * 90.00029 * 17 15 13 19 19 H 1.48501 * 109.46833 * 209.99704 * 17 15 13 20 20 H 1.48502 * 109.47478 * 329.99621 * 17 15 13 21 21 C 1.41135 * 120.00427 * 241.66054 * 12 11 10 22 22 C 1.43198 * 120.00281 * 185.45492 * 21 12 11 23 23 N 9.42458 * 146.26218 * 6.00433 * 6 1 2 24 24 C 1.43197 * 119.99859 * 5.46034 * 21 12 11 25 25 N 9.87139 * 161.44093 * 260.54674 * 2 1 3 26 26 N 1.32180 * 121.38078 * 0.02562 * 10 9 8 27 27 C 1.32775 * 121.47910 * 359.96278 * 26 10 9 28 28 N 1.37167 * 132.78515 * 180.02562 * 27 26 10 29 29 H 0.97009 * 125.56483 * 0.02562 * 28 27 26 30 30 H 1.08993 * 109.47315 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46622 * 300.00415 * 1 2 3 32 32 H 1.08994 * 109.46916 * 59.99635 * 1 2 3 33 33 H 1.07998 * 126.19646 * 359.97438 * 6 5 3 34 34 H 1.07997 * 120.84269 * 0.33302 * 8 7 6 35 35 H 1.08001 * 120.20915 * 179.97438 * 9 8 7 36 36 H 0.97002 * 119.99654 * 186.51949 * 11 10 9 37 37 H 0.97001 * 120.00176 * 184.99222 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4021 2.2216 -0.0051 5 6 3.5292 1.2785 -0.0006 6 6 4.2600 2.4263 -0.0114 7 6 5.6258 2.0636 -0.0041 8 6 6.8218 2.8002 -0.0070 9 6 8.0048 2.1160 -0.0039 10 6 7.9934 0.7190 0.0014 11 7 9.1985 0.0295 0.0051 12 6 10.3905 0.7200 0.1396 13 6 10.6397 1.4583 1.2901 14 1 11.3610 2.2618 1.2704 15 6 9.9515 1.1588 2.4821 16 7 9.2285 0.0775 2.5630 17 14 10.0749 2.3116 3.9468 18 1 8.9939 3.3268 3.8703 19 1 9.9342 1.5324 5.2031 20 1 11.3949 2.9919 3.9315 21 6 11.3528 0.6741 -0.8917 22 6 12.6319 1.2904 -0.7055 23 7 13.6466 1.7790 -0.5559 24 6 11.0502 0.0113 -2.1245 25 7 10.8101 -0.5160 -3.0992 26 7 6.8593 0.0400 0.0031 27 6 5.6828 0.6553 0.0004 28 7 4.3906 0.1950 0.0017 29 1 4.1239 -0.7378 0.0054 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 3.8674 3.4323 -0.0214 34 1 6.8071 3.8801 -0.0112 35 1 8.9425 2.6518 -0.0064 36 1 9.2050 -0.9361 -0.0865 37 1 8.6972 -0.0925 3.3566 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:06 Heat of formation + Delta-G solvation = 52.520661 kcal Electronic energy + Delta-G solvation = -27128.638207 eV Core-core repulsion = 23065.085943 eV Total energy + Delta-G solvation = -4063.552264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.096 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.55438 -40.23197 -38.70720 -36.71731 -36.46294 -35.21370 -34.80707 -33.56845 -32.75832 -30.68140 -29.87691 -28.98444 -27.34623 -27.24397 -24.15736 -22.84461 -21.93187 -21.09683 -20.30530 -19.19965 -18.62068 -17.73153 -17.30863 -16.95938 -16.61157 -16.57759 -16.17036 -15.31328 -15.04802 -14.79588 -14.24988 -13.82867 -13.77238 -13.48970 -13.25799 -12.92333 -12.75277 -12.67576 -12.46541 -12.40820 -12.27566 -12.12478 -11.77400 -11.73008 -11.69909 -11.58409 -11.09683 -11.07059 -11.00658 -10.90590 -10.71641 -10.33698 -10.15481 -9.47493 -9.03355 -8.29765 -8.14007 -7.78202 -6.90276 -5.57472 0.77663 1.81376 1.96215 2.26103 2.38652 2.65577 2.71805 2.75562 2.85767 3.14418 3.33336 3.70891 3.84415 4.00098 4.11999 4.28201 4.38225 4.67991 4.82874 4.86325 4.91401 5.06296 5.10783 5.22853 5.32347 5.43388 5.49026 5.69524 5.89099 5.99539 6.08238 6.10821 6.23546 6.48900 6.51495 6.69371 6.89399 6.98730 7.22740 7.32423 7.53359 7.56100 7.63209 8.03879 8.16061 8.70144 8.89049 9.04574 9.10611 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014092 B = 0.003262 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.481052 B = 8581.048739 C = 9697.704495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.362 6.362 3 C 0.538 3.462 4 O -0.502 6.502 5 C -0.014 4.014 6 C -0.052 4.052 7 C -0.234 4.234 8 C 0.008 3.992 9 C -0.226 4.226 10 C 0.500 3.500 11 N -0.629 5.629 12 C 0.378 3.622 13 C -0.375 4.375 14 H 0.115 0.885 15 C 0.070 3.930 16 N -0.712 5.712 17 Si 0.921 3.079 18 H -0.253 1.253 19 H -0.268 1.268 20 H -0.248 1.248 21 C -0.302 4.302 22 C 0.325 3.675 23 N -0.528 5.528 24 C 0.308 3.692 25 N -0.527 5.527 26 N -0.576 5.576 27 C 0.364 3.636 28 N -0.561 5.561 29 H 0.422 0.578 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.154 0.846 34 H 0.135 0.865 35 H 0.151 0.849 36 H 0.409 0.591 37 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.533 1.737 4.737 16.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.279 6.279 3 C 0.384 3.616 4 O -0.390 6.390 5 C -0.119 4.119 6 C -0.079 4.079 7 C -0.242 4.242 8 C -0.018 4.018 9 C -0.250 4.250 10 C 0.253 3.747 11 N -0.252 5.252 12 C 0.274 3.726 13 C -0.402 4.402 14 H 0.133 0.867 15 C -0.162 4.162 16 N -0.330 5.330 17 Si 0.742 3.258 18 H -0.178 1.178 19 H -0.192 1.192 20 H -0.170 1.170 21 C -0.321 4.321 22 C 0.016 3.984 23 N -0.210 5.210 24 C 0.000 4.000 25 N -0.209 5.209 26 N -0.303 5.303 27 C 0.127 3.873 28 N -0.171 5.171 29 H 0.261 0.739 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.172 0.828 34 H 0.153 0.847 35 H 0.169 0.831 36 H 0.247 0.753 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.711 0.844 3.630 15.176 hybrid contribution -0.794 0.188 1.088 1.360 sum -15.505 1.032 4.719 16.240 Atomic orbital electron populations 1.23272 0.75701 1.03770 1.02724 1.86584 1.23883 1.32740 1.84730 1.19887 0.86970 0.81694 0.73073 1.90895 1.65371 1.35805 1.46972 1.18529 0.85951 0.87669 1.19792 1.20769 0.90920 0.97001 0.99233 1.18544 0.93939 0.93806 1.17908 1.20546 0.89669 0.99583 0.92009 1.21388 1.00114 0.93454 1.10010 1.17622 0.84212 0.87533 0.85294 1.41352 1.01030 1.09514 1.73313 1.16680 0.81258 0.85049 0.89603 1.20366 1.15900 1.12441 0.91521 0.86734 1.26499 0.92783 0.95268 1.01688 1.69473 1.13738 1.19421 1.30343 0.85979 0.81569 0.80221 0.78067 1.17752 1.19202 1.17045 1.12920 0.93324 1.31887 0.93929 1.24634 0.91106 0.90766 0.91876 1.81081 1.12743 1.17106 1.10044 1.25100 0.92284 0.91015 0.91628 1.80997 1.09956 1.17251 1.12668 1.65744 0.95021 1.40108 1.29382 1.17806 0.84725 0.88769 0.95985 1.41464 1.02560 1.08377 1.64696 0.73889 0.87999 0.91729 0.91703 0.82811 0.84745 0.83128 0.75294 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.36 -3.96 10.57 -40.99 -0.43 -4.40 16 3 C 0.54 6.97 7.93 34.14 0.27 7.24 16 4 O -0.50 -7.33 16.64 -19.34 -0.32 -7.65 16 5 C -0.01 -0.19 7.00 -82.26 -0.58 -0.77 16 6 C -0.05 -0.71 10.54 -39.19 -0.41 -1.12 16 7 C -0.23 -3.60 6.17 -106.86 -0.66 -4.26 16 8 C 0.01 0.11 10.17 -39.31 -0.40 -0.29 16 9 C -0.23 -3.74 8.64 -39.61 -0.34 -4.08 16 10 C 0.50 9.05 6.34 -155.15 -0.98 8.07 16 11 N -0.63 -11.63 3.26 -9.71 -0.03 -11.66 16 12 C 0.38 7.19 4.84 -83.53 -0.40 6.79 16 13 C -0.37 -6.92 6.82 -38.32 -0.26 -7.18 16 14 H 0.11 2.11 7.16 -52.49 -0.38 1.74 16 15 C 0.07 1.22 4.92 -17.20 -0.08 1.14 16 16 N -0.71 -12.91 11.21 55.60 0.62 -12.29 16 17 Si 0.92 13.82 29.58 -169.99 -5.03 8.79 16 18 H -0.25 -3.78 7.11 56.52 0.40 -3.38 16 19 H -0.27 -4.05 7.11 56.52 0.40 -3.65 16 20 H -0.25 -3.81 7.11 56.52 0.40 -3.41 16 21 C -0.30 -6.15 5.88 -104.95 -0.62 -6.77 16 22 C 0.32 6.95 13.98 -22.47 -0.31 6.64 16 23 N -0.53 -11.87 18.54 41.84 0.78 -11.09 16 24 C 0.31 6.64 14.82 -22.54 -0.33 6.31 16 25 N -0.53 -12.04 18.52 41.76 0.77 -11.27 16 26 N -0.58 -10.44 10.42 -11.43 -0.12 -10.56 16 27 C 0.36 6.02 8.40 -155.76 -1.31 4.72 16 28 N -0.56 -7.81 6.18 -8.87 -0.05 -7.86 16 29 H 0.42 5.03 8.96 -40.82 -0.37 4.66 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.15 2.43 6.19 -52.49 -0.32 2.11 16 36 H 0.41 7.62 8.94 -40.82 -0.36 7.25 16 37 H 0.30 5.16 8.29 -40.82 -0.34 4.82 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -25.62 353.33 -6.53 -32.15 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -2.68 Total: 12.72 kcal Atomic # 6 Polarization: 23.15 SS G_CDS: -5.36 Total: 17.79 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: 1.97 Total: -64.73 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.76 Total: -12.05 kcal Atomic # 14 Polarization: 13.82 SS G_CDS: -5.03 Total: 8.79 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -25.62 -6.53 -32.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.666 kcal (2) G-P(sol) polarization free energy of solvation -25.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds