Wall clock time and date at job start Tue Mar 31 2020 20:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34883 * 117.00075 * 2 1 4 4 O 1.21602 * 119.99607 * 359.72281 * 3 2 1 5 5 C 1.46682 * 119.99811 * 180.02562 * 3 2 1 6 6 C 1.36071 * 125.48165 * 179.44381 * 5 3 2 7 7 C 1.41308 * 107.61203 * 179.84486 * 6 5 3 8 8 C 1.40469 * 133.50112 * 180.12945 * 7 6 5 9 9 C 1.36657 * 118.32445 * 180.30475 * 8 7 6 10 10 C 1.39699 * 119.58103 * 0.02562 * 9 8 7 11 11 N 1.38846 * 119.30811 * 180.02562 * 10 9 8 12 12 C 1.38402 * 120.00374 * 6.51984 * 11 10 9 13 13 C 1.38961 * 119.99629 * 61.66135 * 12 11 10 14 14 H 1.07998 * 119.99833 * 202.15932 * 13 12 11 15 15 C 1.40862 * 120.00346 * 22.15808 * 13 12 11 16 16 N 1.30325 * 119.99711 * 9.84099 * 15 13 12 17 17 Si 1.86796 * 120.00102 * 189.84820 * 15 13 12 18 18 H 1.48501 * 109.47425 * 90.00029 * 17 15 13 19 19 H 1.48501 * 109.46833 * 209.99704 * 17 15 13 20 20 H 1.48502 * 109.47478 * 329.99621 * 17 15 13 21 21 C 1.41135 * 120.00427 * 241.66054 * 12 11 10 22 22 C 1.43198 * 120.00281 * 185.45492 * 21 12 11 23 23 N 9.42458 * 146.26218 * 6.00433 * 6 1 2 24 24 C 1.43197 * 119.99859 * 5.46034 * 21 12 11 25 25 N 9.87139 * 161.44093 * 260.54674 * 2 1 3 26 26 N 1.32180 * 121.38078 * 0.02562 * 10 9 8 27 27 C 1.32775 * 121.47910 * 359.96278 * 26 10 9 28 28 N 1.37167 * 132.78515 * 180.02562 * 27 26 10 29 29 H 0.97009 * 125.56483 * 0.02562 * 28 27 26 30 30 H 1.08993 * 109.47315 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46622 * 300.00415 * 1 2 3 32 32 H 1.08994 * 109.46916 * 59.99635 * 1 2 3 33 33 H 1.07998 * 126.19646 * 359.97438 * 6 5 3 34 34 H 1.07997 * 120.84269 * 0.33302 * 8 7 6 35 35 H 1.08001 * 120.20915 * 179.97438 * 9 8 7 36 36 H 0.97002 * 119.99654 * 186.51949 * 11 10 9 37 37 H 0.97001 * 120.00176 * 184.99222 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4021 2.2216 -0.0051 5 6 3.5292 1.2785 -0.0006 6 6 4.2600 2.4263 -0.0114 7 6 5.6258 2.0636 -0.0041 8 6 6.8218 2.8002 -0.0070 9 6 8.0048 2.1160 -0.0039 10 6 7.9934 0.7190 0.0014 11 7 9.1985 0.0295 0.0051 12 6 10.3905 0.7200 0.1396 13 6 10.6397 1.4583 1.2901 14 1 11.3610 2.2618 1.2704 15 6 9.9515 1.1588 2.4821 16 7 9.2285 0.0775 2.5630 17 14 10.0749 2.3116 3.9468 18 1 8.9939 3.3268 3.8703 19 1 9.9342 1.5324 5.2031 20 1 11.3949 2.9919 3.9315 21 6 11.3528 0.6741 -0.8917 22 6 12.6319 1.2904 -0.7055 23 7 13.6466 1.7790 -0.5559 24 6 11.0502 0.0113 -2.1245 25 7 10.8101 -0.5160 -3.0992 26 7 6.8593 0.0400 0.0031 27 6 5.6828 0.6553 0.0004 28 7 4.3906 0.1950 0.0017 29 1 4.1239 -0.7378 0.0054 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 3.8674 3.4323 -0.0214 34 1 6.8071 3.8801 -0.0112 35 1 8.9425 2.6518 -0.0064 36 1 9.2050 -0.9361 -0.0865 37 1 8.6972 -0.0925 3.3566 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:05 Heat of formation + Delta-G solvation = 40.669517 kcal Electronic energy + Delta-G solvation = -27129.152112 eV Core-core repulsion = 23065.085943 eV Total energy + Delta-G solvation = -4064.066168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.096 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.69793 -41.24880 -40.01197 -38.02361 -37.54096 -36.78544 -36.51680 -34.95982 -33.98820 -32.10941 -31.03466 -30.01411 -28.78929 -28.23533 -25.27861 -24.13589 -23.12546 -22.42200 -21.37191 -20.69743 -19.71505 -19.09882 -18.54060 -18.28084 -17.80199 -17.51326 -17.43568 -16.53526 -16.29711 -15.97035 -15.45931 -15.11669 -14.69534 -14.60469 -14.43689 -14.33050 -14.28687 -13.91420 -13.84555 -13.64320 -13.50575 -13.39203 -13.23181 -13.13635 -13.06588 -12.95959 -12.69701 -12.59569 -12.02278 -11.92692 -11.86719 -11.54437 -11.45541 -10.81568 -10.31361 -9.75013 -9.31547 -9.12843 -8.24399 -7.13600 -0.33945 0.47217 0.71577 1.04678 1.40171 1.41334 1.55172 1.59153 1.74714 2.06674 2.07669 2.11428 2.27292 2.35777 2.60884 2.75844 3.09942 3.42775 3.71874 3.74859 3.84064 3.96721 4.17894 4.25249 4.29497 4.34581 4.49060 4.65284 4.69198 4.70341 4.78768 4.89806 5.15882 5.30641 5.37555 5.41898 5.49722 5.63349 5.93374 6.02001 6.16349 6.26052 6.54932 6.65620 6.78257 7.18894 7.35077 7.42439 7.71926 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014092 B = 0.003262 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.481052 B = 8581.048739 C = 9697.704495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.544 3.456 4 O -0.519 6.519 5 C -0.012 4.012 6 C -0.053 4.053 7 C -0.239 4.239 8 C 0.020 3.980 9 C -0.244 4.244 10 C 0.483 3.517 11 N -0.634 5.634 12 C 0.377 3.623 13 C -0.364 4.364 14 H 0.115 0.885 15 C 0.048 3.952 16 N -0.720 5.720 17 Si 0.973 3.027 18 H -0.246 1.246 19 H -0.267 1.267 20 H -0.252 1.252 21 C -0.316 4.316 22 C 0.332 3.668 23 N -0.553 5.553 24 C 0.316 3.684 25 N -0.558 5.558 26 N -0.594 5.594 27 C 0.339 3.661 28 N -0.554 5.554 29 H 0.430 0.570 30 H 0.133 0.867 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.177 0.823 34 H 0.171 0.829 35 H 0.151 0.849 36 H 0.404 0.596 37 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.539 2.781 6.093 18.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.281 6.281 3 C 0.390 3.610 4 O -0.409 6.409 5 C -0.117 4.117 6 C -0.079 4.079 7 C -0.246 4.246 8 C -0.006 4.006 9 C -0.267 4.267 10 C 0.238 3.762 11 N -0.258 5.258 12 C 0.273 3.727 13 C -0.391 4.391 14 H 0.133 0.867 15 C -0.183 4.183 16 N -0.338 5.338 17 Si 0.792 3.208 18 H -0.170 1.170 19 H -0.191 1.191 20 H -0.175 1.175 21 C -0.334 4.334 22 C 0.025 3.975 23 N -0.236 5.236 24 C 0.010 3.990 25 N -0.241 5.241 26 N -0.321 5.321 27 C 0.102 3.898 28 N -0.164 5.164 29 H 0.270 0.730 30 H 0.151 0.849 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.194 0.806 34 H 0.189 0.811 35 H 0.169 0.831 36 H 0.241 0.759 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.759 1.859 4.974 17.580 hybrid contribution -0.426 -0.186 0.764 0.894 sum -17.185 1.673 5.738 18.194 Atomic orbital electron populations 1.23632 0.73556 1.05991 1.03058 1.86578 1.25941 1.31495 1.84087 1.19740 0.86607 0.82036 0.72613 1.90889 1.65631 1.36503 1.47840 1.18781 0.86533 0.87606 1.18812 1.21028 0.90036 0.98119 0.98754 1.18808 0.94990 0.93405 1.17446 1.20931 0.88581 1.01305 0.89759 1.21452 1.00957 0.92864 1.11467 1.17791 0.83975 0.88209 0.86212 1.41267 1.01140 1.09151 1.74209 1.16637 0.81382 0.85260 0.89389 1.20557 1.15180 1.11706 0.91681 0.86688 1.27039 0.92211 0.96136 1.02922 1.69494 1.13282 1.20030 1.30986 0.85206 0.81339 0.78713 0.75507 1.17015 1.19110 1.17499 1.12936 0.93486 1.32970 0.94057 1.24750 0.91064 0.90370 0.91335 1.81071 1.13330 1.18374 1.10800 1.25273 0.91594 0.90574 0.91543 1.80981 1.10901 1.18698 1.13537 1.65658 0.95639 1.40964 1.29830 1.18071 0.84952 0.89731 0.97044 1.41481 1.01855 1.09006 1.64090 0.73043 0.84923 0.91378 0.91431 0.80550 0.81146 0.83144 0.75940 0.87724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.58 16 2 O -0.36 -7.20 10.57 -57.97 -0.61 -7.81 16 3 C 0.54 13.02 7.93 70.03 0.56 13.58 16 4 O -0.52 -14.09 16.64 19.50 0.32 -13.77 16 5 C -0.01 -0.30 7.00 39.80 0.28 -0.02 16 6 C -0.05 -1.31 10.54 22.52 0.24 -1.08 16 7 C -0.24 -6.89 6.17 -21.32 -0.13 -7.03 16 8 C 0.02 0.53 10.17 22.44 0.23 0.76 16 9 C -0.24 -7.83 8.64 22.25 0.19 -7.64 16 10 C 0.48 17.46 6.34 133.32 0.85 18.30 16 11 N -0.63 -23.72 3.26 -184.64 -0.60 -24.33 16 12 C 0.38 14.42 4.84 38.99 0.19 14.61 16 13 C -0.36 -13.19 6.82 23.09 0.16 -13.04 16 14 H 0.12 4.15 7.16 -2.91 -0.02 4.13 16 15 C 0.05 1.63 4.92 85.56 0.42 2.05 16 16 N -0.72 -25.46 11.21 21.98 0.25 -25.21 16 17 Si 0.97 26.60 29.58 68.60 2.03 28.63 16 18 H -0.25 -6.48 7.11 99.48 0.71 -5.78 16 19 H -0.27 -7.25 7.11 99.48 0.71 -6.55 16 20 H -0.25 -7.06 7.11 99.48 0.71 -6.35 16 21 C -0.32 -13.01 5.88 -20.08 -0.12 -13.13 16 22 C 0.33 14.31 13.98 88.33 1.23 15.55 16 23 N -0.55 -24.94 18.54 19.00 0.35 -24.59 16 24 C 0.32 13.95 14.82 88.35 1.31 15.26 16 25 N -0.56 -26.04 18.52 18.98 0.35 -25.69 16 26 N -0.59 -21.50 10.42 -190.07 -1.98 -23.48 16 27 C 0.34 10.92 8.40 134.02 1.13 12.04 16 28 N -0.55 -14.77 6.18 -181.96 -1.12 -15.89 16 29 H 0.43 9.82 8.96 -92.70 -0.83 8.99 16 30 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 33 H 0.18 3.52 8.06 -2.91 -0.02 3.50 16 34 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.15 4.75 6.19 -2.91 -0.02 4.73 16 36 H 0.40 15.47 8.94 -92.71 -0.83 14.64 16 37 H 0.31 10.15 8.29 -92.71 -0.77 9.38 16 Total: -1.00 -54.27 353.33 6.25 -48.02 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: -0.45 Total: 32.32 kcal Atomic # 6 Polarization: 44.08 SS G_CDS: 7.72 Total: 51.80 kcal Atomic # 7 Polarization: -136.43 SS G_CDS: -2.76 Total: -139.19 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.29 Total: -21.58 kcal Atomic # 14 Polarization: 26.60 SS G_CDS: 2.03 Total: 28.63 kcal Total: -54.27 6.25 -48.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.685 kcal (2) G-P(sol) polarization free energy of solvation -54.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds