Wall clock time and date at job start Tue Mar 31 2020 20:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34736 * 117.00376 * 2 1 4 4 O 1.21487 * 119.99785 * 359.97438 * 3 2 1 5 5 C 1.47564 * 120.00020 * 180.02562 * 3 2 1 6 6 C 1.39155 * 119.87424 * 5.21148 * 5 3 2 7 7 C 1.39481 * 119.78826 * 179.97438 * 6 5 3 8 8 N 1.35898 * 133.38690 * 179.97438 * 7 6 5 9 9 C 1.30079 * 109.58183 * 180.02562 * 8 7 6 10 10 N 1.36037 * 110.10160 * 359.97438 * 9 8 7 11 11 H 0.97000 * 126.31163 * 179.97438 * 10 9 8 12 12 C 1.37866 * 107.36921 * 359.78838 * 10 9 8 13 13 C 1.39650 * 133.82342 * 179.53631 * 12 10 9 14 14 N 1.39869 * 120.05217 * 0.65453 * 13 12 10 15 15 C 1.38257 * 119.99527 * 185.50015 * 14 13 12 16 16 C 1.39016 * 120.00058 * 61.49160 * 15 14 13 17 17 H 1.08002 * 119.99909 * 203.63012 * 16 15 14 18 18 C 1.40824 * 120.00063 * 23.63606 * 16 15 14 19 19 N 1.30344 * 120.00347 * 359.36079 * 18 16 15 20 20 Si 1.86801 * 119.99893 * 179.36634 * 18 16 15 21 21 H 1.48504 * 109.47073 * 60.00059 * 20 18 16 22 22 H 1.48504 * 109.47252 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47286 * 300.00084 * 20 18 16 24 24 C 1.41176 * 119.99606 * 241.48680 * 15 14 13 25 25 C 1.43196 * 120.00151 * 354.70575 * 24 15 14 26 26 N 8.48655 * 130.63254 * 336.77615 * 2 1 3 27 27 C 1.43195 * 119.99650 * 174.42481 * 24 15 14 28 28 N 8.40466 * 106.69621 * 358.71451 * 2 1 3 29 29 C 1.38097 * 119.89483 * 180.36985 * 13 12 10 30 30 H 1.08995 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46536 * 300.00270 * 1 2 3 32 32 H 1.08997 * 109.47409 * 59.99599 * 1 2 3 33 33 H 1.08001 * 120.10815 * 359.96785 * 6 5 3 34 34 H 1.07991 * 124.95054 * 180.02562 * 9 8 7 35 35 H 0.96993 * 119.99724 * 5.49150 * 14 13 12 36 36 H 0.96997 * 120.00218 * 184.99499 * 19 18 16 37 37 H 1.08000 * 119.89004 * 180.25584 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4021 2.2194 -0.0005 5 6 3.5374 1.2776 -0.0006 6 6 4.2923 0.1138 -0.1107 7 6 5.6851 0.1889 -0.1116 8 7 6.6701 -0.7430 -0.2015 9 6 7.8304 -0.1569 -0.1542 10 7 7.6700 1.1884 -0.0316 11 1 8.3785 1.8485 0.0249 12 6 6.3149 1.4407 -0.0069 13 6 5.5497 2.6033 0.1081 14 7 6.1786 3.8478 0.2175 15 6 5.4259 4.9849 0.4452 16 6 4.6690 5.0966 1.6059 17 1 3.8141 5.7561 1.6317 18 6 5.0171 4.3499 2.7480 19 7 6.0414 3.5447 2.7131 20 14 4.0106 4.5133 4.3132 21 1 2.6050 4.1188 4.0413 22 1 4.5786 3.6283 5.3617 23 1 4.0476 5.9223 4.7807 24 6 5.4260 6.0327 -0.5010 25 6 6.2914 5.9686 -1.6401 26 7 6.9785 5.9186 -2.5396 27 6 4.5564 7.1566 -0.3248 28 7 3.8666 8.0483 -0.1806 29 6 4.1711 2.5227 0.1076 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 3.8014 -0.8444 -0.1951 34 1 8.7824 -0.6643 -0.2057 35 1 7.1427 3.9130 0.1337 36 1 6.2382 2.9768 3.4744 37 1 3.5794 3.4222 0.1923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079608.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:59 Heat of formation + Delta-G solvation = 52.369145 kcal Electronic energy + Delta-G solvation = -28199.678930 eV Core-core repulsion = 24136.120096 eV Total energy + Delta-G solvation = -4063.558834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.096 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.89069 -40.07050 -38.39953 -36.48094 -35.92498 -35.23346 -34.80031 -33.83335 -32.47761 -30.88001 -29.35331 -28.39024 -27.26817 -27.17720 -23.81984 -22.96091 -21.79221 -20.88242 -20.46416 -18.98143 -18.40285 -17.67401 -17.20247 -16.82103 -16.39767 -16.12050 -16.06261 -15.58700 -15.00587 -14.84298 -14.24417 -13.89322 -13.60350 -13.31346 -13.16479 -12.91804 -12.67828 -12.45584 -12.28722 -12.02533 -11.94941 -11.80918 -11.77328 -11.61446 -11.51383 -11.37511 -11.07946 -10.98737 -10.85022 -10.62785 -10.54405 -10.28457 -10.10009 -9.95195 -9.40781 -8.24375 -8.15551 -7.69133 -6.61522 -5.50349 1.11965 1.42799 2.09535 2.69624 2.73162 2.82203 2.88549 2.96875 3.08941 3.14150 3.39114 3.76369 3.85124 4.01205 4.18507 4.27811 4.34344 4.39128 4.92656 5.08307 5.12338 5.17922 5.25701 5.46291 5.51498 5.52210 5.59751 5.68848 5.81794 6.12556 6.16511 6.26675 6.43047 6.55406 6.72667 6.78854 6.94590 7.02880 7.23985 7.45269 7.58883 7.71290 7.96430 8.05180 8.16324 8.34894 8.88471 9.08232 9.14835 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.007758 B = 0.005628 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3608.333136 B = 4974.178158 C = 5911.845087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.513 3.487 4 O -0.499 6.499 5 C -0.085 4.085 6 C -0.075 4.075 7 C 0.066 3.934 8 N -0.497 5.497 9 C 0.256 3.744 10 N -0.591 5.591 11 H 0.422 0.578 12 C 0.030 3.970 13 C 0.272 3.728 14 N -0.659 5.659 15 C 0.382 3.618 16 C -0.375 4.375 17 H 0.111 0.889 18 C 0.075 3.925 19 N -0.727 5.727 20 Si 0.923 3.077 21 H -0.249 1.249 22 H -0.269 1.269 23 H -0.252 1.252 24 C -0.309 4.309 25 C 0.311 3.689 26 N -0.534 5.534 27 C 0.324 3.676 28 N -0.529 5.529 29 C -0.133 4.133 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.135 0.865 34 H 0.212 0.788 35 H 0.395 0.605 36 H 0.301 0.699 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.569 -12.907 3.912 13.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.357 3.643 4 O -0.387 6.387 5 C -0.089 4.089 6 C -0.097 4.097 7 C -0.052 4.052 8 N -0.218 5.218 9 C -0.032 4.032 10 N -0.202 5.202 11 H 0.260 0.740 12 C -0.083 4.083 13 C 0.167 3.833 14 N -0.279 5.279 15 C 0.277 3.723 16 C -0.402 4.402 17 H 0.129 0.871 18 C -0.155 4.155 19 N -0.345 5.345 20 Si 0.744 3.256 21 H -0.173 1.173 22 H -0.193 1.193 23 H -0.176 1.176 24 C -0.327 4.327 25 C 0.004 3.996 26 N -0.217 5.217 27 C 0.015 3.985 28 N -0.211 5.211 29 C -0.159 4.159 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.153 0.847 34 H 0.229 0.771 35 H 0.231 0.769 36 H 0.113 0.887 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.242 -12.242 2.828 12.566 hybrid contribution 0.569 0.816 1.199 1.557 sum 0.811 -11.426 4.027 12.142 Atomic orbital electron populations 1.23218 0.76627 1.03306 1.02564 1.86565 1.23031 1.33078 1.84733 1.21174 0.89154 0.81200 0.72727 1.90854 1.66639 1.35853 1.45367 1.18370 0.88152 0.93869 1.08466 1.20103 0.89665 0.97855 1.02121 1.18594 0.93492 0.87675 1.05443 1.70465 0.97371 1.31653 1.22267 1.25211 0.99054 0.79917 0.99026 1.42984 1.06330 1.09259 1.61602 0.73977 1.18585 0.83842 0.95684 1.10159 1.16101 0.90185 0.81929 0.95121 1.41261 1.08092 1.02770 1.75808 1.16701 0.84999 0.82065 0.88490 1.20299 1.10519 1.17014 0.92411 0.87119 1.26426 0.94325 0.92454 1.02310 1.69454 1.19427 1.12535 1.33129 0.85996 0.81033 0.80617 0.77937 1.17277 1.19337 1.17550 1.13022 1.17068 1.00227 1.02388 1.25068 0.91391 0.91899 0.91233 1.80941 1.16400 1.10859 1.13455 1.24691 0.91075 0.91048 0.91658 1.81092 1.15518 1.13146 1.11321 1.20493 0.91638 0.97627 1.06161 0.88344 0.91974 0.91942 0.84711 0.77144 0.76925 0.88731 0.82836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.57 101.05 1.07 1.46 16 2 O -0.36 -5.09 9.79 -40.59 -0.40 -5.49 16 3 C 0.51 8.74 7.88 34.53 0.27 9.01 16 4 O -0.50 -9.71 16.12 -19.26 -0.31 -10.02 16 5 C -0.08 -1.46 5.87 -105.04 -0.62 -2.08 16 6 C -0.08 -1.21 9.65 -38.78 -0.37 -1.59 16 7 C 0.07 1.09 7.21 -84.74 -0.61 0.48 16 8 N -0.50 -7.41 11.28 -12.09 -0.14 -7.54 16 9 C 0.26 2.86 12.97 -89.81 -1.16 1.69 16 10 N -0.59 -7.13 6.22 -11.61 -0.07 -7.20 16 11 H 0.42 4.02 8.96 -40.82 -0.37 3.65 16 12 C 0.03 0.48 7.15 -83.76 -0.60 -0.12 16 13 C 0.27 4.77 5.09 -83.72 -0.43 4.34 16 14 N -0.66 -11.65 3.27 -8.17 -0.03 -11.68 16 15 C 0.38 7.55 4.94 -83.56 -0.41 7.13 16 16 C -0.37 -7.44 6.87 -38.32 -0.26 -7.70 16 17 H 0.11 2.28 7.05 -52.49 -0.37 1.91 16 18 C 0.08 1.38 5.14 -17.21 -0.09 1.29 16 19 N -0.73 -12.86 10.73 55.59 0.60 -12.26 16 20 Si 0.92 14.97 29.57 -169.99 -5.03 9.94 16 21 H -0.25 -4.22 7.11 56.52 0.40 -3.82 16 22 H -0.27 -4.22 7.11 56.52 0.40 -3.81 16 23 H -0.25 -4.17 7.11 56.52 0.40 -3.77 16 24 C -0.31 -6.55 5.88 -104.94 -0.62 -7.17 16 25 C 0.31 6.79 14.81 -22.57 -0.33 6.45 16 26 N -0.53 -12.08 18.52 41.72 0.77 -11.30 16 27 C 0.32 7.32 13.93 -22.46 -0.31 7.01 16 28 N -0.53 -12.53 18.54 41.86 0.78 -11.75 16 29 C -0.13 -2.49 8.28 -38.93 -0.32 -2.81 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.14 1.96 7.59 -52.49 -0.40 1.56 16 34 H 0.21 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.40 6.48 8.83 -40.82 -0.36 6.12 16 36 H 0.30 5.00 8.29 -40.82 -0.34 4.66 16 37 H 0.15 3.14 5.76 -52.49 -0.30 2.83 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -27.74 350.55 -5.97 -33.70 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -2.62 Total: 10.92 kcal Atomic # 6 Polarization: 22.20 SS G_CDS: -4.80 Total: 17.40 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: 1.91 Total: -61.74 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.71 Total: -15.51 kcal Atomic # 14 Polarization: 14.97 SS G_CDS: -5.03 Total: 9.94 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.74 -5.97 -33.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079608.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.073 kcal (2) G-P(sol) polarization free energy of solvation -27.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds