Wall clock time and date at job start Tue Mar 31 2020 20:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34736 * 117.00376 * 2 1 4 4 O 1.21487 * 119.99785 * 359.97438 * 3 2 1 5 5 C 1.47564 * 120.00020 * 180.02562 * 3 2 1 6 6 C 1.39155 * 119.87424 * 5.21148 * 5 3 2 7 7 C 1.39481 * 119.78826 * 179.97438 * 6 5 3 8 8 N 1.35898 * 133.38690 * 179.97438 * 7 6 5 9 9 C 1.30079 * 109.58183 * 180.02562 * 8 7 6 10 10 N 1.36037 * 110.10160 * 359.97438 * 9 8 7 11 11 H 0.97000 * 126.31163 * 179.97438 * 10 9 8 12 12 C 1.37866 * 107.36921 * 359.78838 * 10 9 8 13 13 C 1.39650 * 133.82342 * 179.53631 * 12 10 9 14 14 N 1.39869 * 120.05217 * 0.65453 * 13 12 10 15 15 C 1.38257 * 119.99527 * 185.50015 * 14 13 12 16 16 C 1.39016 * 120.00058 * 61.49160 * 15 14 13 17 17 H 1.08002 * 119.99909 * 203.63012 * 16 15 14 18 18 C 1.40824 * 120.00063 * 23.63606 * 16 15 14 19 19 N 1.30344 * 120.00347 * 359.36079 * 18 16 15 20 20 Si 1.86801 * 119.99893 * 179.36634 * 18 16 15 21 21 H 1.48504 * 109.47073 * 60.00059 * 20 18 16 22 22 H 1.48504 * 109.47252 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47286 * 300.00084 * 20 18 16 24 24 C 1.41176 * 119.99606 * 241.48680 * 15 14 13 25 25 C 1.43196 * 120.00151 * 354.70575 * 24 15 14 26 26 N 8.48655 * 130.63254 * 336.77615 * 2 1 3 27 27 C 1.43195 * 119.99650 * 174.42481 * 24 15 14 28 28 N 8.40466 * 106.69621 * 358.71451 * 2 1 3 29 29 C 1.38097 * 119.89483 * 180.36985 * 13 12 10 30 30 H 1.08995 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46536 * 300.00270 * 1 2 3 32 32 H 1.08997 * 109.47409 * 59.99599 * 1 2 3 33 33 H 1.08001 * 120.10815 * 359.96785 * 6 5 3 34 34 H 1.07991 * 124.95054 * 180.02562 * 9 8 7 35 35 H 0.96993 * 119.99724 * 5.49150 * 14 13 12 36 36 H 0.96997 * 120.00218 * 184.99499 * 19 18 16 37 37 H 1.08000 * 119.89004 * 180.25584 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4021 2.2194 -0.0005 5 6 3.5374 1.2776 -0.0006 6 6 4.2923 0.1138 -0.1107 7 6 5.6851 0.1889 -0.1116 8 7 6.6701 -0.7430 -0.2015 9 6 7.8304 -0.1569 -0.1542 10 7 7.6700 1.1884 -0.0316 11 1 8.3785 1.8485 0.0249 12 6 6.3149 1.4407 -0.0069 13 6 5.5497 2.6033 0.1081 14 7 6.1786 3.8478 0.2175 15 6 5.4259 4.9849 0.4452 16 6 4.6690 5.0966 1.6059 17 1 3.8141 5.7561 1.6317 18 6 5.0171 4.3499 2.7480 19 7 6.0414 3.5447 2.7131 20 14 4.0106 4.5133 4.3132 21 1 2.6050 4.1188 4.0413 22 1 4.5786 3.6283 5.3617 23 1 4.0476 5.9223 4.7807 24 6 5.4260 6.0327 -0.5010 25 6 6.2914 5.9686 -1.6401 26 7 6.9785 5.9186 -2.5396 27 6 4.5564 7.1566 -0.3248 28 7 3.8666 8.0483 -0.1806 29 6 4.1711 2.5227 0.1076 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 3.8014 -0.8444 -0.1951 34 1 8.7824 -0.6643 -0.2057 35 1 7.1427 3.9130 0.1337 36 1 6.2382 2.9768 3.4744 37 1 3.5794 3.4222 0.1923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079608.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:58 Heat of formation + Delta-G solvation = 37.827200 kcal Electronic energy + Delta-G solvation = -28200.309516 eV Core-core repulsion = 24136.120096 eV Total energy + Delta-G solvation = -4064.189420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.096 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.02306 -41.32317 -39.81001 -37.83819 -37.31166 -36.77922 -36.57350 -35.23988 -33.74295 -32.25739 -30.58624 -29.68256 -28.79076 -28.28388 -25.00164 -24.27722 -23.05293 -22.20880 -21.69183 -20.52877 -19.58954 -19.07739 -18.66147 -18.04569 -17.87933 -17.30617 -17.22819 -16.97109 -16.19764 -16.08649 -15.48612 -15.15725 -14.82403 -14.63739 -14.43143 -14.37669 -14.29833 -13.92959 -13.68388 -13.46344 -13.42502 -13.38242 -13.23691 -13.02222 -12.94956 -12.76719 -12.63280 -12.58430 -12.11889 -11.87911 -11.73807 -11.61768 -11.53331 -11.07970 -10.70517 -9.74266 -9.39734 -9.12678 -7.98718 -7.13902 -0.16492 0.17466 0.65734 1.34255 1.43032 1.49668 1.64102 1.74579 2.02321 2.03956 2.06893 2.07955 2.22231 2.30294 2.58227 2.75625 2.99460 3.35676 3.40448 3.81458 3.89950 3.97744 4.27986 4.37338 4.38976 4.40065 4.44074 4.59410 4.64211 4.68399 4.77272 4.94037 5.13172 5.32968 5.38087 5.45366 5.48367 5.63477 5.79666 6.02067 6.19035 6.53006 6.67504 6.78248 6.87891 6.98544 7.16805 7.32522 7.69578 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.007758 B = 0.005628 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3608.333136 B = 4974.178158 C = 5911.845087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.515 3.485 4 O -0.534 6.534 5 C -0.097 4.097 6 C -0.066 4.066 7 C 0.054 3.946 8 N -0.527 5.527 9 C 0.284 3.716 10 N -0.582 5.582 11 H 0.436 0.564 12 C 0.023 3.977 13 C 0.265 3.735 14 N -0.655 5.655 15 C 0.381 3.619 16 C -0.374 4.374 17 H 0.097 0.903 18 C 0.055 3.945 19 N -0.715 5.715 20 Si 0.966 3.034 21 H -0.264 1.264 22 H -0.251 1.251 23 H -0.256 1.256 24 C -0.325 4.325 25 C 0.319 3.681 26 N -0.553 5.553 27 C 0.327 3.673 28 N -0.557 5.557 29 C -0.154 4.154 30 H 0.138 0.862 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.149 0.851 34 H 0.268 0.732 35 H 0.401 0.599 36 H 0.311 0.689 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.159 -15.567 4.951 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C 0.362 3.638 4 O -0.425 6.425 5 C -0.101 4.101 6 C -0.088 4.088 7 C -0.064 4.064 8 N -0.248 5.248 9 C -0.003 4.003 10 N -0.193 5.193 11 H 0.277 0.723 12 C -0.091 4.091 13 C 0.161 3.839 14 N -0.276 5.276 15 C 0.276 3.724 16 C -0.402 4.402 17 H 0.115 0.885 18 C -0.177 4.177 19 N -0.333 5.333 20 Si 0.786 3.214 21 H -0.188 1.188 22 H -0.174 1.174 23 H -0.180 1.180 24 C -0.344 4.344 25 C 0.013 3.987 26 N -0.236 5.236 27 C 0.021 3.979 28 N -0.241 5.241 29 C -0.181 4.181 30 H 0.156 0.844 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.167 0.833 34 H 0.283 0.717 35 H 0.238 0.762 36 H 0.123 0.877 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.876 -14.936 3.861 15.541 hybrid contribution 0.122 1.422 0.935 1.706 sum 1.998 -13.514 4.796 14.478 Atomic orbital electron populations 1.23596 0.74457 1.05915 1.02539 1.86549 1.25121 1.31371 1.84010 1.21219 0.89201 0.81489 0.71938 1.90831 1.67309 1.37086 1.47231 1.18392 0.88491 0.93882 1.09374 1.20241 0.89978 0.97841 1.00764 1.18829 0.93942 0.88336 1.05319 1.70507 0.98124 1.31837 1.24364 1.26340 0.99981 0.79219 0.94795 1.43068 1.05215 1.10238 1.60782 0.72345 1.18530 0.85557 0.94829 1.10134 1.16097 0.90037 0.82227 0.95575 1.41105 1.08143 1.02277 1.76064 1.16610 0.85396 0.82353 0.88025 1.20385 1.09900 1.16681 0.93205 0.88531 1.26776 0.95177 0.92448 1.03268 1.69409 1.18744 1.11413 1.33782 0.85370 0.79346 0.80490 0.76167 1.18835 1.17405 1.18037 1.13098 1.17611 1.00638 1.03078 1.25085 0.91125 0.91450 0.91035 1.80926 1.17238 1.11509 1.13909 1.24956 0.90875 0.91015 0.91097 1.81066 1.16650 1.14080 1.12280 1.20330 0.92180 0.97293 1.08248 0.84373 0.92090 0.91999 0.83326 0.71688 0.76212 0.87666 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.57 113.37 1.20 1.76 16 2 O -0.35 -9.86 9.79 -56.46 -0.55 -10.41 16 3 C 0.52 17.88 7.88 70.28 0.55 18.43 16 4 O -0.53 -21.58 16.12 19.88 0.32 -21.26 16 5 C -0.10 -3.40 5.87 -20.14 -0.12 -3.52 16 6 C -0.07 -2.08 9.65 22.79 0.22 -1.86 16 7 C 0.05 1.68 7.21 39.37 0.28 1.97 16 8 N -0.53 -14.06 11.28 -192.17 -2.17 -16.22 16 9 C 0.28 5.10 12.97 180.06 2.33 7.43 16 10 N -0.58 -12.14 6.22 -190.65 -1.19 -13.32 16 11 H 0.44 6.79 8.96 -92.71 -0.83 5.96 16 12 C 0.02 0.71 7.15 39.09 0.28 0.98 16 13 C 0.26 9.22 5.09 38.17 0.19 9.41 16 14 N -0.65 -23.00 3.27 -179.76 -0.59 -23.59 16 15 C 0.38 15.33 4.94 39.04 0.19 15.52 16 16 C -0.37 -15.14 6.87 23.09 0.16 -14.98 16 17 H 0.10 4.15 7.05 -2.91 -0.02 4.13 16 18 C 0.05 1.96 5.14 85.55 0.44 2.40 16 19 N -0.72 -24.23 10.73 21.98 0.24 -23.99 16 20 Si 0.97 29.95 29.57 68.60 2.03 31.98 16 21 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 22 H -0.25 -7.04 7.11 99.48 0.71 -6.33 16 23 H -0.26 -8.13 7.11 99.48 0.71 -7.43 16 24 C -0.33 -14.15 5.88 -20.07 -0.12 -14.27 16 25 C 0.32 14.09 14.81 88.37 1.31 15.40 16 26 N -0.55 -25.06 18.52 18.97 0.35 -24.71 16 27 C 0.33 15.28 13.93 88.32 1.23 16.51 16 28 N -0.56 -27.21 18.54 19.01 0.35 -26.86 16 29 C -0.15 -5.90 8.28 22.69 0.19 -5.71 16 30 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 33 H 0.15 4.12 7.59 -2.91 -0.02 4.10 16 34 H 0.27 1.49 8.06 -2.92 -0.02 1.47 16 35 H 0.40 12.81 8.83 -92.71 -0.82 11.99 16 36 H 0.31 9.58 8.29 -92.71 -0.77 8.81 16 37 H 0.13 5.49 5.76 -2.91 -0.02 5.48 16 Total: -1.00 -61.45 350.55 6.70 -54.75 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.44 Total: 24.15 kcal Atomic # 6 Polarization: 41.12 SS G_CDS: 8.35 Total: 49.47 kcal Atomic # 7 Polarization: -125.69 SS G_CDS: -3.00 Total: -128.69 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.23 Total: -31.67 kcal Atomic # 14 Polarization: 29.95 SS G_CDS: 2.03 Total: 31.98 kcal Total: -61.45 6.70 -54.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079608.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.581 kcal (2) G-P(sol) polarization free energy of solvation -61.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds