Wall clock time and date at job start Tue Mar 31 2020 20:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34838 * 117.00284 * 2 1 4 4 O 1.21602 * 119.99884 * 359.97438 * 3 2 1 5 5 C 1.46730 * 120.00446 * 180.02562 * 3 2 1 6 6 C 1.36476 * 126.82437 * 359.97438 * 5 3 2 7 7 N 1.35474 * 109.75434 * 180.02562 * 6 5 3 8 8 H 0.96996 * 124.71613 * 180.02562 * 7 6 5 9 9 C 1.37878 * 110.56681 * 359.97438 * 7 6 5 10 10 N 1.32666 * 132.83092 * 180.02562 * 9 7 6 11 11 C 1.31554 * 121.80287 * 179.97438 * 10 9 7 12 12 C 1.39227 * 121.43440 * 0.02562 * 11 10 9 13 13 N 1.39969 * 120.41824 * 179.97438 * 12 11 10 14 14 C 1.38252 * 120.00153 * 353.23472 * 13 12 11 15 15 C 1.39019 * 120.00135 * 301.17700 * 14 13 12 16 16 H 1.07994 * 120.00426 * 153.67529 * 15 14 13 17 17 C 1.40820 * 119.99522 * 333.39470 * 15 14 13 18 18 N 1.30342 * 120.00027 * 164.39299 * 17 15 14 19 19 Si 1.86799 * 120.00441 * 344.39650 * 17 15 14 20 20 H 1.48494 * 109.47326 * 90.30102 * 19 17 15 21 21 H 1.48503 * 109.47310 * 210.30385 * 19 17 15 22 22 H 1.48505 * 109.46847 * 330.29714 * 19 17 15 23 23 C 1.41177 * 119.99952 * 121.17538 * 14 13 12 24 24 C 1.43193 * 119.99955 * 354.65252 * 23 14 13 25 25 N 9.17072 * 111.80066 * 339.07257 * 2 1 3 26 26 C 1.43204 * 119.99849 * 174.65174 * 23 14 13 27 27 N 9.60382 * 137.93660 * 175.47799 * 5 1 2 28 28 C 1.38949 * 119.16110 * 0.24874 * 12 11 10 29 29 C 1.39299 * 118.00751 * 359.51189 * 28 12 11 30 30 H 1.08997 * 109.46987 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46705 * 300.00062 * 1 2 3 32 32 H 1.09000 * 109.47106 * 59.99769 * 1 2 3 33 33 H 1.07994 * 125.12484 * 0.02562 * 6 5 3 34 34 H 1.08004 * 119.28241 * 179.97438 * 11 10 9 35 35 H 0.97000 * 119.99986 * 173.22893 * 13 12 11 36 36 H 0.96996 * 120.00762 * 180.02562 * 18 17 15 37 37 H 1.08004 * 120.99249 * 179.75144 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4020 2.2212 -0.0005 5 6 3.5295 1.2782 -0.0006 6 6 4.4036 0.2301 -0.0006 7 7 5.6760 0.6950 -0.0007 8 1 6.4685 0.1357 -0.0011 9 6 5.6880 2.0738 -0.0012 10 7 6.6686 2.9672 -0.0018 11 6 6.4282 4.2606 -0.0027 12 6 5.1275 4.7573 -0.0025 13 7 4.8961 6.1378 -0.0030 14 6 5.9544 7.0162 0.1374 15 6 6.7616 6.9570 1.2677 16 1 7.7846 7.2998 1.2193 17 6 6.2436 6.4555 2.4773 18 7 7.0523 6.1137 3.4407 19 14 4.3974 6.2801 2.7014 20 1 3.9706 4.9298 2.2545 21 1 4.0535 6.4587 4.1350 22 1 3.7004 7.3125 1.8929 23 6 6.2154 7.9732 -0.8671 24 6 5.4577 7.9608 -2.0820 25 7 4.8578 7.9531 -3.0414 26 6 7.2379 8.9564 -0.6709 27 7 8.0493 9.7366 -0.5116 28 6 4.0621 3.8654 0.0039 29 6 4.3500 2.5025 -0.0005 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 4.1232 -0.8128 -0.0007 34 1 7.2577 4.9522 -0.0028 35 1 3.9932 6.4781 -0.1019 36 1 6.6956 5.7680 4.2738 37 1 3.0414 4.2182 0.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169083915.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:05 Heat of formation + Delta-G solvation = 53.825552 kcal Electronic energy + Delta-G solvation = -27624.702583 eV Core-core repulsion = 23561.206903 eV Total energy + Delta-G solvation = -4063.495680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.096 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.64881 -40.00668 -38.95959 -36.83814 -36.32337 -35.31128 -34.81830 -34.05951 -32.69160 -31.08718 -29.79564 -28.12057 -27.62485 -27.33170 -23.80213 -23.46928 -22.56486 -21.17130 -20.07276 -19.19586 -18.48718 -17.54768 -17.28182 -17.00622 -16.39438 -16.36921 -16.22533 -16.04193 -15.35847 -15.01529 -14.80546 -13.58719 -13.47395 -13.36518 -13.26810 -13.12028 -12.95853 -12.78817 -12.75456 -12.49407 -12.42867 -12.15615 -11.81421 -11.73628 -11.62033 -11.52890 -11.13577 -11.02867 -10.87902 -10.72316 -10.59141 -10.42054 -9.88727 -9.53001 -9.29164 -8.34568 -8.17358 -7.82024 -7.03287 -5.50880 0.88720 1.49049 1.86604 2.07911 2.56114 2.73628 2.76114 2.82743 2.89454 3.17363 3.42480 3.59308 3.83245 4.02098 4.09120 4.21942 4.28858 4.52806 4.65911 4.76108 4.95813 5.03798 5.07853 5.15734 5.20808 5.25912 5.33809 5.44480 5.55841 5.88471 6.07750 6.13420 6.25623 6.36271 6.43319 6.49927 6.76606 7.03123 7.14634 7.20404 7.43761 7.65227 7.83734 7.87178 8.13846 8.22879 8.87433 9.08249 9.11907 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.003833 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.865436 B = 7302.841823 C = 7587.517715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.364 6.364 3 C 0.538 3.462 4 O -0.511 6.511 5 C -0.231 4.231 6 C 0.154 3.846 7 N -0.560 5.560 8 H 0.424 0.576 9 C 0.226 3.774 10 N -0.458 5.458 11 C 0.118 3.882 12 C 0.154 3.846 13 N -0.682 5.682 14 C 0.336 3.664 15 C -0.360 4.360 16 H 0.125 0.875 17 C 0.078 3.922 18 N -0.722 5.722 19 Si 0.912 3.088 20 H -0.242 1.242 21 H -0.285 1.285 22 H -0.248 1.248 23 C -0.295 4.295 24 C 0.309 3.691 25 N -0.527 5.527 26 C 0.322 3.678 27 N -0.524 5.524 28 C -0.108 4.108 29 C -0.064 4.064 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.192 0.808 34 H 0.181 0.819 35 H 0.406 0.594 36 H 0.305 0.695 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 -18.706 2.527 20.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.281 6.281 3 C 0.384 3.616 4 O -0.400 6.400 5 C -0.241 4.241 6 C 0.018 3.982 7 N -0.164 5.164 8 H 0.262 0.738 9 C -0.004 4.004 10 N -0.169 5.169 11 C -0.051 4.051 12 C 0.051 3.949 13 N -0.310 5.310 14 C 0.233 3.767 15 C -0.387 4.387 16 H 0.142 0.858 17 C -0.154 4.154 18 N -0.339 5.339 19 Si 0.736 3.264 20 H -0.166 1.166 21 H -0.212 1.212 22 H -0.172 1.172 23 C -0.313 4.313 24 C 0.001 3.999 25 N -0.209 5.209 26 C 0.014 3.986 27 N -0.206 5.206 28 C -0.140 4.140 29 C -0.070 4.070 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.208 0.792 34 H 0.198 0.802 35 H 0.244 0.756 36 H 0.117 0.883 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.007 -17.651 1.564 19.055 hybrid contribution -1.811 -0.206 0.658 1.938 sum -8.818 -17.857 2.222 20.039 Atomic orbital electron populations 1.23204 0.76339 1.03319 1.02616 1.86528 1.23276 1.33089 1.85219 1.20004 0.87654 0.81219 0.72690 1.90850 1.66490 1.35888 1.46785 1.18778 0.88766 0.92721 1.23866 1.22209 0.81938 0.99100 0.94924 1.41271 1.08030 1.04589 1.62469 0.73790 1.18193 0.90102 0.84483 1.07658 1.66502 1.34222 1.01554 1.14645 1.22618 0.95383 0.89354 0.97771 1.18500 0.94686 0.83896 0.97861 1.42155 1.09754 1.01823 1.77255 1.16829 0.83073 0.85662 0.91119 1.20126 1.01215 1.26220 0.91136 0.85761 1.26685 1.03129 0.90568 0.95064 1.69401 1.39975 1.19674 1.04834 0.86202 0.79317 0.82461 0.78444 1.16585 1.21170 1.17213 1.12820 1.12714 1.10003 0.95769 1.24996 0.91661 0.91728 0.91537 1.80894 1.14857 1.12303 1.12855 1.24653 0.91044 0.91006 0.91916 1.81109 1.15057 1.14292 1.10157 1.20339 0.98871 0.90143 1.04603 1.18892 0.91971 0.92159 1.04027 0.88294 0.91987 0.91949 0.79153 0.80197 0.75627 0.88326 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.38 16 2 O -0.36 -3.89 10.40 -40.87 -0.42 -4.31 16 3 C 0.54 7.44 7.93 34.16 0.27 7.71 16 4 O -0.51 -8.58 16.03 -19.35 -0.31 -8.89 16 5 C -0.23 -3.09 6.27 -103.38 -0.65 -3.74 16 6 C 0.15 1.42 11.63 -16.58 -0.19 1.23 16 7 N -0.56 -5.77 5.97 -11.93 -0.07 -5.84 16 8 H 0.42 2.94 8.96 -40.82 -0.37 2.58 16 9 C 0.23 3.44 8.41 -155.36 -1.31 2.13 16 10 N -0.46 -7.81 10.38 -12.10 -0.13 -7.93 16 11 C 0.12 2.11 9.87 -17.30 -0.17 1.94 16 12 C 0.15 2.70 4.46 -83.51 -0.37 2.33 16 13 N -0.68 -12.11 2.27 -8.05 -0.02 -12.13 16 14 C 0.34 6.48 4.49 -83.56 -0.38 6.11 16 15 C -0.36 -7.26 7.12 -38.32 -0.27 -7.53 16 16 H 0.12 2.73 7.44 -52.49 -0.39 2.34 16 17 C 0.08 1.54 5.13 -17.21 -0.09 1.45 16 18 N -0.72 -14.64 13.90 55.59 0.77 -13.87 16 19 Si 0.91 16.15 24.40 -169.99 -4.15 12.01 16 20 H -0.24 -4.27 5.31 56.52 0.30 -3.97 16 21 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 22 H -0.25 -4.31 6.75 56.52 0.38 -3.93 16 23 C -0.30 -6.11 5.88 -104.93 -0.62 -6.73 16 24 C 0.31 6.65 14.81 -22.62 -0.33 6.32 16 25 N -0.53 -11.95 18.51 41.66 0.77 -11.18 16 26 C 0.32 7.19 14.04 -22.45 -0.32 6.87 16 27 N -0.52 -12.35 18.54 41.87 0.78 -11.58 16 28 C -0.11 -1.85 8.50 -38.92 -0.33 -2.18 16 29 C -0.06 -1.04 6.27 -104.93 -0.66 -1.69 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.19 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.18 3.28 6.15 -52.48 -0.32 2.96 16 35 H 0.41 6.74 7.99 -40.82 -0.33 6.42 16 36 H 0.30 5.59 8.29 -40.82 -0.34 5.25 16 37 H 0.14 2.36 7.54 -52.48 -0.40 1.97 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -28.72 343.80 -4.69 -33.41 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -2.75 Total: 9.56 kcal Atomic # 6 Polarization: 19.93 SS G_CDS: -4.34 Total: 15.58 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: 2.11 Total: -62.53 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.74 Total: -13.20 kcal Atomic # 14 Polarization: 16.15 SS G_CDS: -4.15 Total: 12.01 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.72 -4.69 -33.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083915.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.234 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds