Wall clock time and date at job start Tue Mar 31 2020 20:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34838 * 117.00284 * 2 1 4 4 O 1.21602 * 119.99884 * 359.97438 * 3 2 1 5 5 C 1.46730 * 120.00446 * 180.02562 * 3 2 1 6 6 C 1.36476 * 126.82437 * 359.97438 * 5 3 2 7 7 N 1.35474 * 109.75434 * 180.02562 * 6 5 3 8 8 H 0.96996 * 124.71613 * 180.02562 * 7 6 5 9 9 C 1.37878 * 110.56681 * 359.97438 * 7 6 5 10 10 N 1.32666 * 132.83092 * 180.02562 * 9 7 6 11 11 C 1.31554 * 121.80287 * 179.97438 * 10 9 7 12 12 C 1.39227 * 121.43440 * 0.02562 * 11 10 9 13 13 N 1.39969 * 120.41824 * 179.97438 * 12 11 10 14 14 C 1.38252 * 120.00153 * 353.23472 * 13 12 11 15 15 C 1.39019 * 120.00135 * 301.17700 * 14 13 12 16 16 H 1.07994 * 120.00426 * 153.67529 * 15 14 13 17 17 C 1.40820 * 119.99522 * 333.39470 * 15 14 13 18 18 N 1.30342 * 120.00027 * 164.39299 * 17 15 14 19 19 Si 1.86799 * 120.00441 * 344.39650 * 17 15 14 20 20 H 1.48494 * 109.47326 * 90.30102 * 19 17 15 21 21 H 1.48503 * 109.47310 * 210.30385 * 19 17 15 22 22 H 1.48505 * 109.46847 * 330.29714 * 19 17 15 23 23 C 1.41177 * 119.99952 * 121.17538 * 14 13 12 24 24 C 1.43193 * 119.99955 * 354.65252 * 23 14 13 25 25 N 9.17072 * 111.80066 * 339.07257 * 2 1 3 26 26 C 1.43204 * 119.99849 * 174.65174 * 23 14 13 27 27 N 9.60382 * 137.93660 * 175.47799 * 5 1 2 28 28 C 1.38949 * 119.16110 * 0.24874 * 12 11 10 29 29 C 1.39299 * 118.00751 * 359.51189 * 28 12 11 30 30 H 1.08997 * 109.46987 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46705 * 300.00062 * 1 2 3 32 32 H 1.09000 * 109.47106 * 59.99769 * 1 2 3 33 33 H 1.07994 * 125.12484 * 0.02562 * 6 5 3 34 34 H 1.08004 * 119.28241 * 179.97438 * 11 10 9 35 35 H 0.97000 * 119.99986 * 173.22893 * 13 12 11 36 36 H 0.96996 * 120.00762 * 180.02562 * 18 17 15 37 37 H 1.08004 * 120.99249 * 179.75144 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4020 2.2212 -0.0005 5 6 3.5295 1.2782 -0.0006 6 6 4.4036 0.2301 -0.0006 7 7 5.6760 0.6950 -0.0007 8 1 6.4685 0.1357 -0.0011 9 6 5.6880 2.0738 -0.0012 10 7 6.6686 2.9672 -0.0018 11 6 6.4282 4.2606 -0.0027 12 6 5.1275 4.7573 -0.0025 13 7 4.8961 6.1378 -0.0030 14 6 5.9544 7.0162 0.1374 15 6 6.7616 6.9570 1.2677 16 1 7.7846 7.2998 1.2193 17 6 6.2436 6.4555 2.4773 18 7 7.0523 6.1137 3.4407 19 14 4.3974 6.2801 2.7014 20 1 3.9706 4.9298 2.2545 21 1 4.0535 6.4587 4.1350 22 1 3.7004 7.3125 1.8929 23 6 6.2154 7.9732 -0.8671 24 6 5.4577 7.9608 -2.0820 25 7 4.8578 7.9531 -3.0414 26 6 7.2379 8.9564 -0.6709 27 7 8.0493 9.7366 -0.5116 28 6 4.0621 3.8654 0.0039 29 6 4.3500 2.5025 -0.0005 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 4.1232 -0.8128 -0.0007 34 1 7.2577 4.9522 -0.0028 35 1 3.9932 6.4781 -0.1019 36 1 6.6956 5.7680 4.2738 37 1 3.0414 4.2182 0.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083915.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:04 Heat of formation + Delta-G solvation = 36.460173 kcal Electronic energy + Delta-G solvation = -27625.455602 eV Core-core repulsion = 23561.206903 eV Total energy + Delta-G solvation = -4064.248699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.096 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.74217 -40.99615 -40.26440 -38.25589 -37.27574 -36.96484 -36.60376 -35.59649 -33.96452 -32.42845 -30.91541 -29.43969 -29.02870 -28.31918 -25.00977 -24.43786 -23.87788 -22.61081 -21.19048 -20.63317 -19.69592 -19.09339 -18.36188 -18.31082 -17.81276 -17.51389 -17.26221 -16.98253 -16.69316 -16.11293 -16.01413 -14.92748 -14.83218 -14.55950 -14.45308 -14.43005 -14.37091 -14.19941 -14.02304 -13.95966 -13.74932 -13.47335 -13.42719 -13.25492 -12.99258 -12.86632 -12.77788 -12.71074 -12.29951 -11.83721 -11.69878 -11.64128 -11.23174 -10.88323 -10.57273 -9.88183 -9.38808 -9.22289 -8.41709 -7.19601 -0.16649 0.15684 0.50643 0.81619 1.26833 1.38257 1.46537 1.64830 1.84757 1.96490 2.02950 2.17488 2.18515 2.23881 2.50998 2.63311 2.88006 3.35621 3.54431 3.60154 3.71947 3.79431 3.91478 4.14067 4.26605 4.40355 4.41990 4.43909 4.49064 4.71184 4.80703 4.81143 4.93943 5.12476 5.20516 5.38775 5.47042 5.56779 5.72228 5.84183 6.07479 6.25477 6.44289 6.63320 6.88261 6.99198 7.13851 7.31395 7.58973 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.003833 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.865436 B = 7302.841823 C = 7587.517715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.353 6.353 3 C 0.540 3.460 4 O -0.554 6.554 5 C -0.274 4.274 6 C 0.213 3.787 7 N -0.543 5.543 8 H 0.444 0.556 9 C 0.217 3.783 10 N -0.465 5.465 11 C 0.097 3.903 12 C 0.145 3.855 13 N -0.682 5.682 14 C 0.353 3.647 15 C -0.359 4.359 16 H 0.103 0.897 17 C 0.065 3.935 18 N -0.740 5.740 19 Si 0.945 3.055 20 H -0.241 1.241 21 H -0.282 1.282 22 H -0.243 1.243 23 C -0.302 4.302 24 C 0.319 3.681 25 N -0.547 5.547 26 C 0.328 3.672 27 N -0.552 5.552 28 C -0.115 4.115 29 C -0.080 4.080 30 H 0.138 0.862 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.252 0.748 34 H 0.168 0.832 35 H 0.411 0.589 36 H 0.315 0.685 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.471 -22.363 2.959 24.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.269 6.269 3 C 0.389 3.611 4 O -0.446 6.446 5 C -0.283 4.283 6 C 0.076 3.924 7 N -0.149 5.149 8 H 0.286 0.714 9 C -0.015 4.015 10 N -0.177 5.177 11 C -0.072 4.072 12 C 0.043 3.957 13 N -0.311 5.311 14 C 0.249 3.751 15 C -0.386 4.386 16 H 0.121 0.879 17 C -0.167 4.167 18 N -0.358 5.358 19 Si 0.767 3.233 20 H -0.165 1.165 21 H -0.209 1.209 22 H -0.167 1.167 23 C -0.321 4.321 24 C 0.012 3.988 25 N -0.230 5.230 26 C 0.021 3.979 27 N -0.234 5.234 28 C -0.146 4.146 29 C -0.087 4.087 30 H 0.156 0.844 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.268 0.732 34 H 0.185 0.815 35 H 0.250 0.750 36 H 0.128 0.872 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.090 -21.343 1.994 22.912 hybrid contribution -1.476 0.641 0.572 1.708 sum -9.566 -20.703 2.567 22.950 Atomic orbital electron populations 1.23517 0.74734 1.05729 1.02164 1.86504 1.24736 1.31142 1.84559 1.20100 0.87834 0.81472 0.71745 1.90831 1.67366 1.37385 1.49053 1.18852 0.89277 0.92710 1.27480 1.23098 0.80142 1.00525 0.88665 1.41372 1.09563 1.02759 1.61184 0.71370 1.18423 0.89424 0.86336 1.07316 1.66445 1.35022 1.01557 1.14638 1.22393 0.95105 0.89843 0.99841 1.18455 0.94815 0.83500 0.98918 1.42043 1.09459 1.01906 1.77686 1.16592 0.83172 0.85164 0.90137 1.20035 1.00458 1.26182 0.91931 0.87898 1.27065 1.05131 0.89993 0.94510 1.69386 1.41174 1.19771 1.05466 0.85701 0.76603 0.82555 0.78416 1.16529 1.20942 1.16682 1.12827 1.12762 1.10441 0.96030 1.24999 0.91288 0.91174 0.91344 1.80890 1.15649 1.13081 1.13380 1.24868 0.90916 0.90809 0.91303 1.81093 1.16052 1.15302 1.11001 1.20409 0.98434 0.91007 1.04768 1.19281 0.93382 0.92679 1.03353 0.84374 0.92484 0.92512 0.73218 0.81518 0.75021 0.87233 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.57 113.37 1.20 1.62 16 2 O -0.35 -6.40 10.40 -57.51 -0.60 -7.00 16 3 C 0.54 13.90 7.93 70.04 0.56 14.45 16 4 O -0.55 -18.41 16.03 19.50 0.31 -18.10 16 5 C -0.27 -6.59 6.27 -19.06 -0.12 -6.71 16 6 C 0.21 2.84 11.63 83.72 0.97 3.81 16 7 N -0.54 -8.97 5.97 -191.66 -1.15 -10.12 16 8 H 0.44 4.08 8.96 -92.71 -0.83 3.25 16 9 C 0.22 6.20 8.41 133.70 1.12 7.33 16 10 N -0.47 -15.62 10.38 -192.19 -1.99 -17.61 16 11 C 0.10 3.50 9.87 84.97 0.84 4.34 16 12 C 0.15 5.15 4.46 38.25 0.17 5.33 16 13 N -0.68 -24.50 2.27 -179.37 -0.41 -24.90 16 14 C 0.35 13.86 4.49 39.04 0.18 14.04 16 15 C -0.36 -14.80 7.12 23.09 0.16 -14.64 16 16 H 0.10 4.69 7.44 -2.91 -0.02 4.67 16 17 C 0.06 2.55 5.13 85.55 0.44 2.99 16 18 N -0.74 -30.03 13.90 21.98 0.31 -29.73 16 19 Si 0.95 32.70 24.40 68.60 1.67 34.38 16 20 H -0.24 -8.36 5.31 99.48 0.53 -7.83 16 21 H -0.28 -9.66 7.11 99.48 0.71 -8.95 16 22 H -0.24 -8.19 6.75 99.48 0.67 -7.52 16 23 C -0.30 -12.73 5.88 -20.07 -0.12 -12.85 16 24 C 0.32 13.88 14.81 88.38 1.31 15.19 16 25 N -0.55 -24.94 18.51 18.95 0.35 -24.59 16 26 C 0.33 14.93 14.04 88.32 1.24 16.17 16 27 N -0.55 -26.49 18.54 19.01 0.35 -26.14 16 28 C -0.11 -3.94 8.50 22.70 0.19 -3.75 16 29 C -0.08 -2.49 6.27 -20.07 -0.13 -2.62 16 30 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.25 0.32 8.06 -2.91 -0.02 0.30 16 34 H 0.17 6.35 6.15 -2.91 -0.02 6.33 16 35 H 0.41 13.76 7.99 -92.71 -0.74 13.02 16 36 H 0.32 11.42 8.29 -92.71 -0.77 10.65 16 37 H 0.14 4.68 7.54 -2.91 -0.02 4.66 16 Total: -1.00 -64.50 343.80 6.29 -58.20 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -0.58 Total: 20.91 kcal Atomic # 6 Polarization: 36.69 SS G_CDS: 8.02 Total: 44.70 kcal Atomic # 7 Polarization: -130.55 SS G_CDS: -2.54 Total: -133.09 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.29 Total: -25.10 kcal Atomic # 14 Polarization: 32.70 SS G_CDS: 1.67 Total: 34.38 kcal Total: -64.50 6.29 -58.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083915.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.663 kcal (2) G-P(sol) polarization free energy of solvation -64.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds