Wall clock time and date at job start Tue Mar 31 2020 20:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34871 * 117.00146 * 2 1 4 4 O 1.21597 * 119.99959 * 0.02562 * 3 2 1 5 5 C 1.46718 * 119.99595 * 180.02562 * 3 2 1 6 6 C 1.36157 * 125.47589 * 179.97438 * 5 3 2 7 7 C 1.41078 * 107.69247 * 179.97438 * 6 5 3 8 8 C 1.41110 * 107.00250 * 359.97438 * 7 6 5 9 9 C 1.39540 * 118.24931 * 180.02562 * 8 7 6 10 10 C 1.36619 * 119.19873 * 0.02562 * 9 8 7 11 11 N 1.32332 * 121.76210 * 359.70106 * 10 9 8 12 12 C 1.32260 * 122.20296 * 0.59962 * 11 10 9 13 13 N 1.38616 * 120.06487 * 179.71389 * 12 11 10 14 14 C 1.38410 * 120.00704 * 356.07947 * 13 12 11 15 15 C 1.38954 * 120.00162 * 300.86198 * 14 13 12 16 16 H 1.08004 * 120.00172 * 152.29939 * 15 14 13 17 17 C 1.40862 * 119.99923 * 332.30472 * 15 14 13 18 18 N 1.30322 * 120.00036 * 2.14921 * 17 15 14 19 19 Si 1.86796 * 119.99897 * 182.15596 * 17 15 14 20 20 H 1.48497 * 109.47436 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47347 * 119.99590 * 19 17 15 22 22 H 1.48503 * 109.47165 * 239.99671 * 19 17 15 23 23 C 1.41138 * 119.99812 * 120.84954 * 14 13 12 24 24 C 1.43199 * 120.00138 * 174.66327 * 23 14 13 25 25 N 9.16461 * 158.60639 * 167.63995 * 5 1 2 26 26 C 1.43199 * 120.00140 * 354.39971 * 23 14 13 27 27 N 8.62805 * 129.12659 * 332.73988 * 2 1 3 28 28 N 1.36870 * 107.51470 * 0.02562 * 8 7 6 29 29 H 0.97003 * 125.62026 * 179.97438 * 28 8 7 30 30 H 1.08997 * 109.46967 * 59.99873 * 1 2 3 31 31 H 1.08996 * 109.47345 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46844 * 300.00193 * 1 2 3 33 33 H 1.07997 * 126.15216 * 359.97438 * 6 5 3 34 34 H 1.07996 * 120.39762 * 179.97438 * 9 8 7 35 35 H 1.07999 * 119.12034 * 180.02562 * 10 9 8 36 36 H 0.97007 * 119.99879 * 176.09143 * 13 12 11 37 37 H 0.97002 * 119.99876 * 185.01301 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2017 0.0000 4 8 1.4021 2.2215 0.0005 5 6 3.5295 1.2783 -0.0006 6 6 4.2607 2.4269 -0.0011 7 6 5.6248 2.0668 -0.0009 8 6 5.6793 0.6567 0.0003 9 6 6.9331 0.0443 0.0013 10 6 8.0554 0.8233 0.0015 11 7 7.9861 2.1448 -0.0050 12 6 6.8316 2.7901 -0.0005 13 7 6.8107 4.1761 -0.0017 14 6 7.9962 4.8863 0.0742 15 6 8.8415 4.7129 1.1634 16 1 9.9036 4.8755 1.0540 17 6 8.3132 4.3249 2.4102 18 7 7.0375 4.0879 2.5320 19 14 9.4410 4.1503 3.8890 20 1 10.8344 4.4732 3.4897 21 1 9.0033 5.0832 4.9583 22 1 9.3821 2.7553 4.3945 23 6 8.3467 5.7864 -0.9548 24 6 9.5143 6.6050 -0.8232 25 7 10.4406 7.2542 -0.7188 26 6 7.5380 5.8770 -2.1331 27 7 6.8966 5.9499 -3.0657 28 7 4.3909 0.1947 0.0003 29 1 4.1253 -0.7382 0.0007 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.8673 3.4327 -0.0016 34 1 7.0152 -1.0326 0.0027 35 1 9.0251 0.3479 0.0018 36 1 5.9651 4.6483 -0.0556 37 1 6.6618 3.8919 3.4046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169084085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:12 Heat of formation + Delta-G solvation = 35.820440 kcal Electronic energy + Delta-G solvation = -27568.522525 eV Core-core repulsion = 23504.246085 eV Total energy + Delta-G solvation = -4064.276440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.096 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.77196 -41.24956 -39.69495 -38.18967 -37.58050 -36.87435 -36.50364 -35.13430 -33.22230 -31.72025 -31.50484 -29.70498 -28.69868 -28.49190 -25.41527 -24.18984 -22.83833 -22.52007 -21.41004 -20.62161 -19.95553 -19.06298 -18.64616 -17.95339 -17.78081 -17.53510 -17.02397 -16.57379 -16.25333 -15.83492 -15.47016 -15.13725 -14.97348 -14.60835 -14.52156 -14.43162 -14.30846 -14.13720 -13.83830 -13.73811 -13.40946 -13.37456 -13.26944 -13.09182 -12.94923 -12.70750 -12.61688 -12.50823 -12.02460 -11.95467 -11.89451 -11.53592 -11.44004 -10.34400 -10.14298 -9.79103 -9.49932 -9.03615 -8.05957 -7.02591 -0.32025 0.55105 0.90689 1.03637 1.41408 1.45545 1.54895 1.58736 1.96939 2.00396 2.09206 2.13909 2.27498 2.32259 2.64176 2.80110 3.25801 3.48730 3.70095 3.78297 3.85968 3.99394 4.11115 4.26139 4.31468 4.32460 4.47784 4.68277 4.70991 4.75938 4.78662 4.84723 5.09383 5.18033 5.38167 5.46501 5.50550 5.69771 5.97811 6.12894 6.31314 6.46399 6.56807 6.66899 6.82676 7.23170 7.38599 7.66362 7.82452 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011709 B = 0.003877 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.664715 B = 7221.085178 C = 8161.721711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.541 3.459 4 O -0.524 6.524 5 C -0.011 4.011 6 C -0.060 4.060 7 C -0.242 4.242 8 C 0.186 3.814 9 C -0.257 4.257 10 C 0.162 3.838 11 N -0.578 5.578 12 C 0.502 3.498 13 N -0.627 5.627 14 C 0.382 3.618 15 C -0.348 4.348 16 H 0.100 0.900 17 C 0.051 3.949 18 N -0.732 5.732 19 Si 0.982 3.018 20 H -0.258 1.258 21 H -0.259 1.259 22 H -0.258 1.258 23 C -0.324 4.324 24 C 0.332 3.668 25 N -0.558 5.558 26 C 0.317 3.683 27 N -0.559 5.559 28 N -0.546 5.546 29 H 0.439 0.561 30 H 0.064 0.936 31 H 0.138 0.862 32 H 0.065 0.935 33 H 0.151 0.849 34 H 0.161 0.839 35 H 0.181 0.819 36 H 0.407 0.593 37 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.160 -17.645 6.342 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C 0.387 3.613 4 O -0.414 6.414 5 C -0.118 4.118 6 C -0.088 4.088 7 C -0.251 4.251 8 C 0.066 3.934 9 C -0.284 4.284 10 C 0.011 3.989 11 N -0.298 5.298 12 C 0.258 3.742 13 N -0.249 5.249 14 C 0.278 3.722 15 C -0.375 4.375 16 H 0.118 0.882 17 C -0.178 4.178 18 N -0.351 5.351 19 Si 0.802 3.198 20 H -0.181 1.181 21 H -0.183 1.183 22 H -0.182 1.182 23 C -0.344 4.344 24 C 0.025 3.975 25 N -0.242 5.242 26 C 0.011 3.989 27 N -0.242 5.242 28 N -0.152 5.152 29 H 0.281 0.719 30 H 0.083 0.917 31 H 0.157 0.843 32 H 0.083 0.917 33 H 0.169 0.831 34 H 0.179 0.821 35 H 0.198 0.802 36 H 0.245 0.755 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.426 -16.027 5.183 19.303 hybrid contribution -1.266 -0.532 0.780 1.579 sum -10.692 -16.560 5.963 20.593 Atomic orbital electron populations 1.23643 0.73604 1.06155 1.02875 1.86544 1.25833 1.30975 1.84119 1.19817 0.86742 0.82116 0.72602 1.90908 1.65861 1.36889 1.47705 1.18707 0.86703 0.87917 1.18459 1.20796 0.90861 0.97904 0.99213 1.18419 0.93106 0.94382 1.19204 1.18290 0.86357 0.91762 0.97021 1.20650 0.88236 1.02126 1.17363 1.22353 0.99263 0.87220 0.90094 1.67382 1.25873 1.11587 1.24936 1.17683 0.87473 0.83871 0.85210 1.41365 1.07748 1.02169 1.73592 1.16669 0.82684 0.84762 0.88113 1.20293 0.97025 1.27877 0.92320 0.88163 1.27029 0.97064 0.90304 1.03443 1.69490 1.13843 1.22553 1.29225 0.85078 0.79176 0.79596 0.75985 1.18101 1.18349 1.18171 1.13019 1.03009 1.20331 0.97998 1.24821 0.91031 0.90456 0.91167 1.81026 1.15066 1.16616 1.11448 1.25271 0.91565 0.90671 0.91396 1.80970 1.14517 1.15245 1.13501 1.41515 1.02512 1.08607 1.62557 0.71932 0.91748 0.84350 0.91655 0.83121 0.82130 0.80241 0.75523 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.58 16 2 O -0.36 -6.96 10.57 -57.85 -0.61 -7.57 16 3 C 0.54 14.03 7.94 70.04 0.56 14.58 16 4 O -0.52 -16.38 16.64 19.52 0.32 -16.06 16 5 C -0.01 -0.31 7.00 39.83 0.28 -0.03 16 6 C -0.06 -1.87 10.26 22.48 0.23 -1.64 16 7 C -0.24 -8.03 6.12 -21.28 -0.13 -8.16 16 8 C 0.19 5.07 7.32 39.38 0.29 5.36 16 9 C -0.26 -6.14 10.08 22.21 0.22 -5.92 16 10 C 0.16 4.54 11.08 84.24 0.93 5.47 16 11 N -0.58 -21.10 8.92 -193.25 -1.72 -22.83 16 12 C 0.50 18.70 6.03 133.62 0.81 19.50 16 13 N -0.63 -24.64 3.30 -183.98 -0.61 -25.24 16 14 C 0.38 16.26 5.47 38.99 0.21 16.47 16 15 C -0.35 -14.43 7.50 23.08 0.17 -14.26 16 16 H 0.10 4.31 7.28 -2.91 -0.02 4.29 16 17 C 0.05 1.90 5.30 85.56 0.45 2.36 16 18 N -0.73 -27.09 10.92 21.98 0.24 -26.85 16 19 Si 0.98 29.89 29.57 68.60 2.03 31.91 16 20 H -0.26 -8.22 7.11 99.48 0.71 -7.52 16 21 H -0.26 -7.64 7.11 99.48 0.71 -6.93 16 22 H -0.26 -7.53 7.11 99.48 0.71 -6.83 16 23 C -0.32 -14.68 5.88 -20.08 -0.12 -14.80 16 24 C 0.33 15.67 14.05 88.33 1.24 16.91 16 25 N -0.56 -27.21 18.54 19.00 0.35 -26.86 16 26 C 0.32 14.82 14.82 88.35 1.31 16.13 16 27 N -0.56 -27.08 18.53 18.98 0.35 -26.72 16 28 N -0.55 -12.24 6.17 -177.08 -1.09 -13.33 16 29 H 0.44 6.70 8.96 -92.71 -0.83 5.87 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.15 4.68 8.06 -2.91 -0.02 4.66 16 34 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.18 3.79 8.06 -2.91 -0.02 3.77 16 36 H 0.41 15.45 8.60 -92.70 -0.80 14.65 16 37 H 0.31 10.31 8.29 -92.71 -0.77 9.54 16 Total: -1.00 -60.00 355.61 6.49 -53.51 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: -0.43 Total: 26.46 kcal Atomic # 6 Polarization: 45.91 SS G_CDS: 7.66 Total: 53.57 kcal Atomic # 7 Polarization: -139.35 SS G_CDS: -2.48 Total: -141.83 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.29 Total: -23.63 kcal Atomic # 14 Polarization: 29.89 SS G_CDS: 2.03 Total: 31.91 kcal Total: -60.00 6.49 -53.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169084085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.334 kcal (2) G-P(sol) polarization free energy of solvation -60.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds