Wall clock time and date at job start Tue Mar 31 2020 20:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50694 * 119.99742 * 2 1 4 4 H 1.09003 * 115.56653 * 25.67839 * 3 2 1 5 5 C 1.52999 * 117.50224 * 171.37614 * 3 2 1 6 6 C 1.52999 * 60.00275 * 107.49038 * 5 3 2 7 7 N 1.46500 * 117.49653 * 252.51781 * 6 5 3 8 8 C 1.38543 * 119.99808 * 295.40086 * 7 6 5 9 9 C 1.40043 * 120.44945 * 354.81470 * 8 7 6 10 10 C 1.38803 * 118.59266 * 180.02562 * 9 8 7 11 11 Cl 1.73597 * 120.33949 * 180.02562 * 10 9 8 12 12 N 1.32212 * 119.32146 * 0.02562 * 10 9 8 13 13 C 1.33416 * 120.86432 * 359.97438 * 12 10 9 14 14 C 1.41573 * 119.23671 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99660 * 187.29494 * 14 13 12 16 16 C 1.40051 * 119.99849 * 7.29289 * 14 13 12 17 17 N 1.30692 * 120.00154 * 7.27994 * 16 14 13 18 18 Si 1.86803 * 119.99766 * 187.27740 * 16 14 13 19 19 H 1.48501 * 109.47266 * 94.98437 * 18 16 14 20 20 H 1.48503 * 109.47062 * 214.98581 * 18 16 14 21 21 H 1.48503 * 109.47316 * 334.97978 * 18 16 14 22 22 N 1.32564 * 120.44914 * 174.83914 * 8 7 6 23 23 C 1.50692 * 117.50275 * 107.51602 * 6 5 3 24 24 O 1.20825 * 119.99988 * 322.00293 * 23 6 5 25 25 O 1.34232 * 120.00511 * 141.99427 * 23 6 5 26 26 C 1.45191 * 117.00529 * 175.65050 * 25 23 6 27 27 C 1.52995 * 109.47186 * 184.61319 * 26 25 23 28 28 H 1.08001 * 120.00398 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99976 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.00223 * 179.97438 * 2 1 3 31 31 H 1.09000 * 117.49301 * 359.97438 * 5 3 2 32 32 H 1.08998 * 117.52246 * 214.97091 * 5 3 2 33 33 H 0.96997 * 120.00142 * 115.40184 * 7 6 5 34 34 H 1.07997 * 120.70290 * 0.04568 * 9 8 7 35 35 H 0.96995 * 119.99758 * 179.97438 * 17 16 14 36 36 H 1.09004 * 109.47131 * 304.61677 * 26 25 23 37 37 H 1.09006 * 109.47171 * 64.60916 * 26 25 23 38 38 H 1.09006 * 109.46883 * 184.88413 * 27 26 25 39 39 H 1.09002 * 109.47039 * 304.87663 * 27 26 25 40 40 H 1.09002 * 109.47501 * 64.88539 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.5311 2.1555 0.4261 5 6 3.5787 1.2461 0.2035 6 6 3.0044 1.5777 -1.1753 7 7 3.1039 0.5498 -2.2145 8 6 4.3473 0.1503 -2.6767 9 6 5.5092 0.7968 -2.2373 10 6 6.7347 0.3654 -2.7257 11 17 8.2037 1.1340 -2.2110 12 7 6.7718 -0.6370 -3.5871 13 6 5.6494 -1.2355 -3.9894 14 6 5.7291 -2.3053 -4.9134 15 1 4.8270 -2.7208 -5.3374 16 6 6.9779 -2.8244 -5.2775 17 7 8.0579 -2.4214 -4.6617 18 14 7.0997 -4.0931 -6.6432 19 1 7.4048 -3.4111 -7.9266 20 1 8.1822 -5.0591 -6.3263 21 1 5.8090 -4.8178 -6.7623 22 7 4.4533 -0.8489 -3.5414 23 6 3.1247 3.0010 -1.6554 24 8 2.9881 3.9148 -0.8767 25 8 3.3838 3.2539 -2.9480 26 6 3.3899 4.6464 -3.3590 27 6 3.5871 4.7301 -4.8739 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 4.0305 0.2633 0.3378 32 1 4.0436 2.0576 0.7634 33 1 2.2992 0.1490 -2.5788 34 1 5.4529 1.6136 -1.5329 35 1 8.9226 -2.7813 -4.9136 36 1 2.4402 5.1088 -3.0900 37 1 4.2038 5.1698 -2.8571 38 1 3.6786 5.7748 -5.1711 39 1 4.4934 4.1924 -5.1525 40 1 2.7299 4.2829 -5.3772 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170914069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:17 Heat of formation + Delta-G solvation = 7.225077 kcal Electronic energy + Delta-G solvation = -26900.330216 eV Core-core repulsion = 22935.921282 eV Total energy + Delta-G solvation = -3964.408934 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.76987 -39.12713 -38.16195 -36.36859 -35.61362 -34.45354 -33.31572 -32.22836 -31.62538 -30.86485 -29.14074 -26.42641 -25.32652 -23.18051 -22.78601 -21.97516 -21.89191 -20.40931 -19.45017 -18.17261 -17.69766 -16.69204 -16.57105 -16.34139 -15.95324 -15.31844 -14.76743 -14.24012 -14.15347 -13.88436 -13.83005 -13.52466 -13.39923 -13.18654 -12.81223 -12.76844 -12.24500 -11.90329 -11.62928 -11.59616 -11.46992 -11.42081 -11.35857 -11.15807 -10.86166 -10.75635 -10.67155 -10.45462 -10.39984 -10.21167 -9.90736 -9.29398 -9.15771 -9.04762 -8.30011 -7.51528 -7.29709 -6.64856 -4.79816 1.77280 2.28857 2.51372 2.66292 2.94086 2.96085 3.04977 3.09250 3.12415 3.44930 3.80432 3.86947 4.44945 4.54719 4.64116 4.70678 4.92850 4.95743 5.00974 5.07703 5.24985 5.42412 5.64034 5.66243 5.75980 5.80094 5.83075 6.02552 6.04096 6.06088 6.28247 6.39972 6.47411 6.52795 6.58268 6.78951 6.87706 7.07798 7.55675 7.87527 8.06892 8.14419 8.48301 8.56543 9.00794 10.05648 10.20638 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010688 B = 0.004028 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.160931 B = 6948.992487 C = 7708.221599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.123 4.123 3 C -0.085 4.085 4 H 0.127 0.873 5 C -0.127 4.127 6 C 0.113 3.887 7 N -0.684 5.684 8 C 0.463 3.537 9 C -0.391 4.391 10 C 0.269 3.731 11 Cl -0.083 7.083 12 N -0.528 5.528 13 C 0.438 3.562 14 C -0.397 4.397 15 H 0.096 0.904 16 C 0.069 3.931 17 N -0.705 5.705 18 Si 0.919 3.081 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.259 1.259 22 N -0.636 5.636 23 C 0.496 3.504 24 O -0.517 6.517 25 O -0.331 6.331 26 C 0.062 3.938 27 C -0.152 4.152 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.406 0.594 34 H 0.106 0.894 35 H 0.278 0.722 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.034 7.419 5.159 12.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.141 4.141 3 C -0.104 4.104 4 H 0.145 0.855 5 C -0.165 4.165 6 C 0.021 3.979 7 N -0.321 5.321 8 C 0.217 3.783 9 C -0.424 4.424 10 C 0.088 3.912 11 Cl -0.055 7.055 12 N -0.249 5.249 13 C 0.202 3.798 14 C -0.432 4.432 15 H 0.114 0.886 16 C -0.159 4.159 17 N -0.326 5.326 18 Si 0.742 3.258 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.183 1.183 22 N -0.365 5.365 23 C 0.338 3.662 24 O -0.406 6.406 25 O -0.247 6.247 26 C -0.012 4.012 27 C -0.209 4.209 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.243 0.757 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.527 7.044 4.796 12.055 hybrid contribution 0.064 0.443 -0.073 0.453 sum -8.463 7.487 4.723 12.247 Atomic orbital electron populations 1.23836 0.95679 1.02096 1.00038 1.22287 0.95474 0.96153 1.00151 1.21858 0.93166 0.98685 0.96646 0.85530 1.23571 0.94608 1.05071 0.93226 1.19661 1.09457 0.83707 0.85113 1.43028 1.05714 1.41622 1.41719 1.17970 0.84026 0.88110 0.88217 1.20843 0.91252 1.12268 1.18011 1.21403 0.84692 0.91969 0.93129 1.98296 1.38794 1.79414 1.88970 1.68513 1.31363 1.09433 1.15630 1.19428 0.79553 0.90976 0.89821 1.19335 0.93906 1.11177 1.18746 0.88576 1.26089 0.95209 0.97422 0.97209 1.70072 0.99075 1.31542 1.31909 0.86128 0.79284 0.79807 0.80572 1.19255 1.19992 1.18259 1.68198 1.29424 1.18651 1.20227 1.22977 0.71842 0.90697 0.80695 1.90635 1.47689 1.46251 1.56048 1.86649 1.80421 1.30284 1.27305 1.23029 1.02004 0.79655 0.96534 1.21789 1.03852 1.02453 0.92848 0.88520 0.87841 0.86329 0.86276 0.86767 0.75729 0.87618 0.91051 0.91595 0.91308 0.90455 0.90984 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 14.35 29.01 0.42 -1.25 16 2 C -0.12 -1.34 8.93 -36.03 -0.32 -1.66 16 3 C -0.08 -1.01 5.52 -91.77 -0.51 -1.51 16 4 H 0.13 1.39 7.99 -51.93 -0.41 0.98 16 5 C -0.13 -1.68 8.40 -26.73 -0.22 -1.91 16 6 C 0.11 1.71 1.73 -132.97 -0.23 1.48 16 7 N -0.68 -11.92 4.79 -48.65 -0.23 -12.15 16 8 C 0.46 10.21 7.63 -154.98 -1.18 9.03 16 9 C -0.39 -8.75 8.82 -38.70 -0.34 -9.09 16 10 C 0.27 6.61 7.33 -17.18 -0.13 6.48 16 11 Cl -0.08 -1.76 29.15 -51.86 -1.51 -3.27 16 12 N -0.53 -14.47 7.97 -9.84 -0.08 -14.54 16 13 C 0.44 12.01 7.34 -158.35 -1.16 10.85 16 14 C -0.40 -10.48 9.37 -37.63 -0.35 -10.83 16 15 H 0.10 2.43 7.86 -52.49 -0.41 2.02 16 16 C 0.07 1.70 5.47 -17.36 -0.09 1.60 16 17 N -0.71 -18.27 11.53 55.55 0.64 -17.63 16 18 Si 0.92 18.06 29.57 -169.99 -5.03 13.04 16 19 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 22 N -0.64 -16.05 10.39 -11.89 -0.12 -16.17 16 23 C 0.50 8.07 7.17 36.00 0.26 8.33 16 24 O -0.52 -8.67 16.20 -18.75 -0.30 -8.97 16 25 O -0.33 -5.56 9.92 -39.26 -0.39 -5.95 16 26 C 0.06 0.81 6.21 37.15 0.23 1.04 16 27 C -0.15 -1.73 10.29 37.15 0.38 -1.35 16 28 H 0.10 0.82 8.05 -52.49 -0.42 0.39 16 29 H 0.10 0.84 8.06 -52.48 -0.42 0.42 16 30 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.12 1.64 8.14 -51.93 -0.42 1.22 16 32 H 0.11 1.41 8.11 -51.93 -0.42 0.99 16 33 H 0.41 6.69 8.70 -40.82 -0.36 6.33 16 34 H 0.11 2.19 6.09 -52.49 -0.32 1.87 16 35 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 36 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -30.35 369.41 -9.57 -39.93 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -4.86 Total: 8.96 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: -3.26 Total: 11.20 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.21 Total: -60.50 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.69 Total: -14.92 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -1.51 Total: -3.27 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.35 -9.57 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170914069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.150 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds