Wall clock time and date at job start Tue Mar 31 2020 20:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50694 * 119.99742 * 2 1 4 4 H 1.09003 * 115.56653 * 25.67839 * 3 2 1 5 5 C 1.52999 * 117.50224 * 171.37614 * 3 2 1 6 6 C 1.52999 * 60.00275 * 107.49038 * 5 3 2 7 7 N 1.46500 * 117.49653 * 252.51781 * 6 5 3 8 8 C 1.38543 * 119.99808 * 295.40086 * 7 6 5 9 9 C 1.40043 * 120.44945 * 354.81470 * 8 7 6 10 10 C 1.38803 * 118.59266 * 180.02562 * 9 8 7 11 11 Cl 1.73597 * 120.33949 * 180.02562 * 10 9 8 12 12 N 1.32212 * 119.32146 * 0.02562 * 10 9 8 13 13 C 1.33416 * 120.86432 * 359.97438 * 12 10 9 14 14 C 1.41573 * 119.23671 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99660 * 187.29494 * 14 13 12 16 16 C 1.40051 * 119.99849 * 7.29289 * 14 13 12 17 17 N 1.30692 * 120.00154 * 7.27994 * 16 14 13 18 18 Si 1.86803 * 119.99766 * 187.27740 * 16 14 13 19 19 H 1.48501 * 109.47266 * 94.98437 * 18 16 14 20 20 H 1.48503 * 109.47062 * 214.98581 * 18 16 14 21 21 H 1.48503 * 109.47316 * 334.97978 * 18 16 14 22 22 N 1.32564 * 120.44914 * 174.83914 * 8 7 6 23 23 C 1.50692 * 117.50275 * 107.51602 * 6 5 3 24 24 O 1.20825 * 119.99988 * 322.00293 * 23 6 5 25 25 O 1.34232 * 120.00511 * 141.99427 * 23 6 5 26 26 C 1.45191 * 117.00529 * 175.65050 * 25 23 6 27 27 C 1.52995 * 109.47186 * 184.61319 * 26 25 23 28 28 H 1.08001 * 120.00398 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99976 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.00223 * 179.97438 * 2 1 3 31 31 H 1.09000 * 117.49301 * 359.97438 * 5 3 2 32 32 H 1.08998 * 117.52246 * 214.97091 * 5 3 2 33 33 H 0.96997 * 120.00142 * 115.40184 * 7 6 5 34 34 H 1.07997 * 120.70290 * 0.04568 * 9 8 7 35 35 H 0.96995 * 119.99758 * 179.97438 * 17 16 14 36 36 H 1.09004 * 109.47131 * 304.61677 * 26 25 23 37 37 H 1.09006 * 109.47171 * 64.60916 * 26 25 23 38 38 H 1.09006 * 109.46883 * 184.88413 * 27 26 25 39 39 H 1.09002 * 109.47039 * 304.87663 * 27 26 25 40 40 H 1.09002 * 109.47501 * 64.88539 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.5311 2.1555 0.4261 5 6 3.5787 1.2461 0.2035 6 6 3.0044 1.5777 -1.1753 7 7 3.1039 0.5498 -2.2145 8 6 4.3473 0.1503 -2.6767 9 6 5.5092 0.7968 -2.2373 10 6 6.7347 0.3654 -2.7257 11 17 8.2037 1.1340 -2.2110 12 7 6.7718 -0.6370 -3.5871 13 6 5.6494 -1.2355 -3.9894 14 6 5.7291 -2.3053 -4.9134 15 1 4.8270 -2.7208 -5.3374 16 6 6.9779 -2.8244 -5.2775 17 7 8.0579 -2.4214 -4.6617 18 14 7.0997 -4.0931 -6.6432 19 1 7.4048 -3.4111 -7.9266 20 1 8.1822 -5.0591 -6.3263 21 1 5.8090 -4.8178 -6.7623 22 7 4.4533 -0.8489 -3.5414 23 6 3.1247 3.0010 -1.6554 24 8 2.9881 3.9148 -0.8767 25 8 3.3838 3.2539 -2.9480 26 6 3.3899 4.6464 -3.3590 27 6 3.5871 4.7301 -4.8739 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 4.0305 0.2633 0.3378 32 1 4.0436 2.0576 0.7634 33 1 2.2992 0.1490 -2.5788 34 1 5.4529 1.6136 -1.5329 35 1 8.9226 -2.7813 -4.9136 36 1 2.4402 5.1088 -3.0900 37 1 4.2038 5.1698 -2.8571 38 1 3.6786 5.7748 -5.1711 39 1 4.4934 4.1924 -5.1525 40 1 2.7299 4.2829 -5.3772 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170914069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:17 Heat of formation + Delta-G solvation = -8.990036 kcal Electronic energy + Delta-G solvation = -26901.033356 eV Core-core repulsion = 22935.921282 eV Total energy + Delta-G solvation = -3965.112074 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.01480 -40.84153 -39.42666 -37.64206 -37.39323 -36.04007 -34.93025 -33.47974 -32.63474 -32.56800 -30.84433 -28.31964 -26.51647 -24.39367 -24.03298 -23.64696 -23.36132 -21.55295 -20.59160 -19.76656 -19.11571 -18.09167 -17.98772 -17.71096 -17.51220 -16.57555 -16.40229 -15.74680 -15.43754 -15.29995 -15.19532 -15.03933 -14.83004 -14.57429 -14.25989 -13.67983 -13.28601 -13.22514 -13.16809 -13.01666 -12.97011 -12.73960 -12.58201 -12.49761 -12.22901 -12.14577 -12.03987 -11.94518 -11.75419 -11.58096 -11.38044 -10.95183 -10.89622 -10.20961 -10.10139 -9.42286 -8.96777 -8.48517 -6.75877 0.64145 0.72867 1.08019 1.12840 1.24792 1.44015 1.54017 1.60093 1.65834 2.01636 2.23919 2.72112 2.75332 3.44356 3.50730 3.55272 3.89720 3.93957 3.99271 4.01599 4.14349 4.23763 4.27092 4.44992 4.57189 4.60980 4.67263 4.74428 4.83844 4.85856 4.97072 5.06082 5.11212 5.14185 5.27964 5.37481 5.69738 5.76387 5.91972 6.16940 6.43584 6.58868 6.66707 6.72864 7.19008 8.18741 8.37059 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010688 B = 0.004028 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.160931 B = 6948.992487 C = 7708.221599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.150 4.150 3 C -0.050 4.050 4 H 0.143 0.857 5 C -0.128 4.128 6 C 0.085 3.915 7 N -0.667 5.667 8 C 0.464 3.536 9 C -0.382 4.382 10 C 0.248 3.752 11 Cl -0.061 7.061 12 N -0.562 5.562 13 C 0.413 3.587 14 C -0.428 4.428 15 H 0.096 0.904 16 C 0.029 3.971 17 N -0.743 5.743 18 Si 0.999 3.001 19 H -0.263 1.263 20 H -0.264 1.264 21 H -0.253 1.253 22 N -0.656 5.656 23 C 0.495 3.505 24 O -0.525 6.525 25 O -0.355 6.355 26 C 0.054 3.946 27 C -0.147 4.147 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.410 0.590 34 H 0.121 0.879 35 H 0.286 0.714 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.049 0.951 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.502 7.772 5.423 14.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.168 4.168 3 C -0.068 4.068 4 H 0.161 0.839 5 C -0.166 4.166 6 C -0.006 4.006 7 N -0.303 5.303 8 C 0.217 3.783 9 C -0.415 4.415 10 C 0.069 3.931 11 Cl -0.033 7.033 12 N -0.284 5.284 13 C 0.176 3.824 14 C -0.463 4.463 15 H 0.114 0.886 16 C -0.195 4.195 17 N -0.364 5.364 18 Si 0.818 3.182 19 H -0.188 1.188 20 H -0.189 1.189 21 H -0.176 1.176 22 N -0.386 5.386 23 C 0.338 3.662 24 O -0.415 6.415 25 O -0.271 6.271 26 C -0.019 4.019 27 C -0.204 4.204 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.142 0.858 33 H 0.248 0.752 34 H 0.139 0.861 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.068 0.932 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.026 7.450 5.109 13.496 hybrid contribution 0.407 0.478 -0.034 0.629 sum -9.619 7.928 5.075 13.458 Atomic orbital electron populations 1.24095 0.95023 1.03497 0.96408 1.22195 0.96099 0.95241 1.03238 1.21940 0.92359 0.99606 0.92934 0.83894 1.23628 0.96284 1.04945 0.91753 1.19996 1.13068 0.82520 0.85053 1.42968 1.04162 1.41497 1.41688 1.18216 0.85684 0.87172 0.87235 1.20964 0.90761 1.12148 1.17582 1.21820 0.86284 0.91929 0.93098 1.98285 1.37616 1.78776 1.88605 1.68504 1.31768 1.10890 1.17284 1.19825 0.80355 0.91708 0.90502 1.19669 0.94968 1.11951 1.19719 0.88581 1.27025 0.94080 0.99113 0.99324 1.70148 0.99817 1.32974 1.33474 0.84954 0.79607 0.76865 0.76821 1.18799 1.18859 1.17602 1.68237 1.28814 1.20062 1.21536 1.23076 0.71587 0.90966 0.80577 1.90620 1.48319 1.46470 1.56101 1.86641 1.80435 1.32394 1.27650 1.23308 1.02861 0.78228 0.97512 1.21809 1.02695 1.04179 0.91696 0.87093 0.86432 0.87394 0.87086 0.85770 0.75168 0.86100 0.90339 0.90082 0.91265 0.87319 0.93201 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 14.35 67.78 0.97 -1.41 16 2 C -0.15 -2.97 8.93 25.64 0.23 -2.74 16 3 C -0.05 -1.08 5.52 -11.54 -0.06 -1.15 16 4 H 0.14 2.70 7.99 -2.39 -0.02 2.68 16 5 C -0.13 -3.26 8.40 30.59 0.26 -3.00 16 6 C 0.09 2.48 1.73 2.86 0.00 2.48 16 7 N -0.67 -23.09 4.79 -307.82 -1.47 -24.57 16 8 C 0.46 20.76 7.63 133.39 1.02 21.77 16 9 C -0.38 -17.28 8.82 22.84 0.20 -17.08 16 10 C 0.25 12.41 7.33 84.77 0.62 13.03 16 11 Cl -0.06 -2.60 29.15 -2.72 -0.08 -2.68 16 12 N -0.56 -31.72 7.97 -185.03 -1.47 -33.20 16 13 C 0.41 23.39 7.34 135.16 0.99 24.39 16 14 C -0.43 -23.28 9.37 23.53 0.22 -23.06 16 15 H 0.10 5.00 7.86 -2.91 -0.02 4.98 16 16 C 0.03 1.46 5.47 85.30 0.47 1.92 16 17 N -0.74 -39.31 11.53 21.84 0.25 -39.05 16 18 Si 1.00 37.14 29.57 68.60 2.03 39.17 16 19 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 20 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 21 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 22 N -0.66 -34.00 10.39 -191.54 -1.99 -35.99 16 23 C 0.49 15.59 7.17 71.23 0.51 16.10 16 24 O -0.53 -16.79 16.20 21.97 0.36 -16.44 16 25 O -0.36 -11.75 9.92 -51.43 -0.51 -12.26 16 26 C 0.05 1.37 6.21 71.98 0.45 1.82 16 27 C -0.15 -3.20 10.29 71.98 0.74 -2.46 16 28 H 0.11 1.44 8.05 -2.91 -0.02 1.42 16 29 H 0.12 1.52 8.06 -2.91 -0.02 1.50 16 30 H 0.11 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.12 2.89 8.11 -2.39 -0.02 2.87 16 33 H 0.41 13.38 8.70 -92.71 -0.81 12.57 16 34 H 0.12 4.99 6.09 -2.91 -0.02 4.97 16 35 H 0.29 13.57 8.29 -92.71 -0.77 12.80 16 36 H 0.08 1.79 8.09 -2.38 -0.02 1.77 16 37 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -67.16 369.41 4.00 -63.16 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.28 Total: 31.24 kcal Atomic # 6 Polarization: 24.00 SS G_CDS: 6.62 Total: 30.62 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -4.69 Total: -132.81 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.15 Total: -28.70 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -0.08 Total: -2.68 kcal Total: -67.16 4.00 -63.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170914069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.167 kcal (2) G-P(sol) polarization free energy of solvation -67.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds