Wall clock time and date at job start Tue Mar 31 2020 20:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 119.99850 * 2 1 4 4 H 1.09003 * 115.54966 * 334.33579 * 3 2 1 5 5 C 1.53072 * 117.53287 * 188.61366 * 3 2 1 6 6 C 1.53000 * 59.98723 * 252.53510 * 5 3 2 7 7 N 1.46502 * 117.49966 * 107.50096 * 6 5 3 8 8 C 1.38538 * 119.99725 * 211.11613 * 7 6 5 9 9 C 1.40039 * 120.45352 * 6.94261 * 8 7 6 10 10 C 1.38797 * 118.59236 * 179.75626 * 9 8 7 11 11 Cl 1.73600 * 120.33693 * 180.23810 * 10 9 8 12 12 N 1.32201 * 119.32663 * 0.51801 * 10 9 8 13 13 C 1.33419 * 120.86171 * 359.72156 * 12 10 9 14 14 C 1.41571 * 119.23940 * 180.02562 * 13 12 10 15 15 H 1.08006 * 119.99841 * 180.02562 * 14 13 12 16 16 C 1.40047 * 120.00130 * 0.02562 * 14 13 12 17 17 N 1.30697 * 120.00159 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00443 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46776 * 89.99645 * 18 16 14 20 20 H 1.48495 * 109.47320 * 210.00122 * 18 16 14 21 21 H 1.48495 * 109.46683 * 330.00265 * 18 16 14 22 22 N 1.32576 * 120.44508 * 187.21608 * 8 7 6 23 23 C 1.50695 * 117.49585 * 252.49909 * 6 5 3 24 24 O 1.20827 * 120.00064 * 71.91210 * 23 6 5 25 25 O 1.34231 * 120.00029 * 251.89979 * 23 6 5 26 26 C 1.45198 * 116.99832 * 174.76212 * 25 23 6 27 27 C 1.53005 * 109.46858 * 184.83565 * 26 25 23 28 28 H 1.07997 * 120.00226 * 179.97438 * 1 2 3 29 29 H 1.08008 * 120.00012 * 359.97438 * 1 2 3 30 30 H 1.07990 * 120.00009 * 180.02562 * 2 1 3 31 31 H 1.09001 * 117.49325 * 145.04136 * 5 3 2 32 32 H 1.09006 * 117.51078 * 0.02562 * 5 3 2 33 33 H 0.97000 * 119.99837 * 30.83468 * 7 6 5 34 34 H 1.08004 * 120.69975 * 359.97438 * 9 8 7 35 35 H 0.96996 * 120.00533 * 179.97438 * 17 16 14 36 36 H 1.08991 * 109.47555 * 304.83767 * 26 25 23 37 37 H 1.09007 * 109.46987 * 64.84205 * 26 25 23 38 38 H 1.09003 * 109.47000 * 64.95478 * 27 26 25 39 39 H 1.08998 * 109.47062 * 184.95403 * 27 26 25 40 40 H 1.08999 * 109.47078 * 304.95612 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.5309 2.1555 -0.4259 5 6 3.5795 1.2470 -0.2033 6 6 3.0044 1.5777 1.1754 7 7 3.1043 0.5496 2.2143 8 6 2.1306 0.4598 3.1957 9 6 0.9752 1.2478 3.1235 10 6 0.0223 1.1229 4.1250 11 17 -1.4297 2.0732 4.0771 12 7 0.2343 0.2771 5.1186 13 6 1.3465 -0.4583 5.1659 14 6 1.5381 -1.3537 6.2456 15 1 2.4341 -1.9547 6.2963 16 6 0.5658 -1.4603 7.2479 17 7 -0.5187 -0.7334 7.1863 18 14 0.8182 -2.6423 8.6723 19 1 1.5235 -1.9433 9.7765 20 1 -0.5007 -3.1251 9.1545 21 1 1.6325 -3.7979 8.2180 22 7 2.2826 -0.3695 4.2189 23 6 3.1235 3.0010 1.6558 24 8 2.4452 3.8664 1.1550 25 8 3.9831 3.3074 2.6403 26 6 4.1310 4.7131 2.9724 27 6 5.2311 4.8757 4.0233 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 4.0437 2.0590 -0.7630 32 1 4.0322 0.2645 -0.3375 33 1 3.8500 -0.0707 2.2127 34 1 0.8271 1.9354 2.3039 35 1 -1.1923 -0.8075 7.8803 36 1 4.3993 5.2720 2.0760 37 1 3.1899 5.0935 3.3697 38 1 6.1885 4.5773 3.5962 39 1 5.2825 5.9183 4.3371 40 1 5.0061 4.2475 4.8851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170914071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:21 Heat of formation + Delta-G solvation = 9.805092 kcal Electronic energy + Delta-G solvation = -27202.373415 eV Core-core repulsion = 23238.076359 eV Total energy + Delta-G solvation = -3964.297056 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.74869 -39.09617 -38.10441 -36.32572 -35.57999 -34.35992 -33.25900 -32.16952 -31.62165 -30.92221 -29.01414 -26.42107 -25.28860 -23.04578 -22.79082 -22.07236 -21.85171 -20.43055 -19.31328 -18.10981 -17.56495 -16.77176 -16.55853 -16.25212 -15.92236 -15.30455 -14.70237 -14.31312 -14.09482 -13.95298 -13.56730 -13.44115 -13.33825 -13.16348 -12.81691 -12.76728 -12.31138 -11.92227 -11.79347 -11.55817 -11.44010 -11.38435 -11.16295 -10.96311 -10.85370 -10.82115 -10.46218 -10.39455 -10.35695 -10.16415 -10.02116 -9.22138 -9.05255 -8.93202 -8.28326 -7.50610 -7.25313 -6.57168 -4.79937 2.03865 2.34252 2.53645 2.70041 2.97199 3.00204 3.05466 3.09107 3.14127 3.38353 3.84605 3.89106 4.56209 4.60550 4.62462 4.74916 4.91469 4.98398 5.15093 5.23414 5.25078 5.44452 5.49788 5.64721 5.77029 5.84936 5.89941 5.97665 6.06232 6.18420 6.29948 6.43629 6.53191 6.79248 6.82021 6.89495 6.93256 7.09813 7.58277 7.87855 8.07105 8.14388 8.49532 8.57843 9.02462 10.07853 10.22679 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010859 B = 0.004283 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.860845 B = 6536.160724 C = 7094.255351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.122 4.122 3 C -0.086 4.086 4 H 0.126 0.874 5 C -0.140 4.140 6 C 0.120 3.880 7 N -0.683 5.683 8 C 0.460 3.540 9 C -0.391 4.391 10 C 0.269 3.731 11 Cl -0.082 7.082 12 N -0.525 5.525 13 C 0.435 3.565 14 C -0.395 4.395 15 H 0.096 0.904 16 C 0.066 3.934 17 N -0.702 5.702 18 Si 0.919 3.081 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.259 1.259 22 N -0.634 5.634 23 C 0.499 3.501 24 O -0.507 6.507 25 O -0.340 6.340 26 C 0.061 3.939 27 C -0.152 4.152 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.405 0.595 34 H 0.109 0.891 35 H 0.277 0.723 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.972 4.995 -10.289 13.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C -0.105 4.105 4 H 0.144 0.856 5 C -0.178 4.178 6 C 0.027 3.973 7 N -0.321 5.321 8 C 0.214 3.786 9 C -0.424 4.424 10 C 0.088 3.912 11 Cl -0.054 7.054 12 N -0.246 5.246 13 C 0.199 3.801 14 C -0.430 4.430 15 H 0.114 0.886 16 C -0.162 4.162 17 N -0.323 5.323 18 Si 0.742 3.258 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.183 1.183 22 N -0.364 5.364 23 C 0.340 3.660 24 O -0.394 6.394 25 O -0.256 6.256 26 C -0.013 4.013 27 C -0.209 4.209 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.243 0.757 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.491 4.876 -9.504 12.499 hybrid contribution -0.092 0.292 0.066 0.313 sum 6.399 5.168 -9.437 12.519 Atomic orbital electron populations 1.23749 0.95783 1.01998 0.98560 1.21944 0.95424 0.95218 1.01459 1.21907 0.91775 0.99057 0.97794 0.85637 1.23512 0.96844 1.04457 0.92941 1.19652 1.08966 0.83928 0.84750 1.43001 1.27233 1.34632 1.27185 1.17953 0.85313 0.88982 0.86312 1.20925 0.99365 1.15462 1.06604 1.21430 0.86327 0.91795 0.91661 1.98296 1.38769 1.70348 1.97992 1.68600 1.23395 1.09632 1.22963 1.19456 0.81577 0.89441 0.89672 1.19336 1.04447 1.17348 1.01845 0.88624 1.26118 0.94425 0.96248 0.99446 1.70149 1.04644 1.28423 1.29063 0.86140 0.78781 0.80560 0.80305 1.19238 1.19984 1.18299 1.68182 1.34728 1.27954 1.05498 1.22824 0.76439 0.90175 0.76526 1.90643 1.42792 1.49721 1.56220 1.86571 1.58725 1.29607 1.50690 1.23039 1.00380 0.78953 0.98930 1.21792 0.97758 1.02526 0.98797 0.88252 0.88441 0.87184 0.87078 0.86493 0.75729 0.87299 0.91178 0.91488 0.91151 0.91699 0.90377 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 14.35 29.01 0.42 -1.89 16 2 C -0.12 -1.68 8.83 -36.02 -0.32 -2.00 16 3 C -0.09 -1.14 4.90 -91.73 -0.45 -1.59 16 4 H 0.13 1.68 7.67 -51.93 -0.40 1.29 16 5 C -0.14 -1.48 9.87 -26.69 -0.26 -1.74 16 6 C 0.12 1.80 1.72 -132.97 -0.23 1.57 16 7 N -0.68 -11.94 4.96 -48.64 -0.24 -12.18 16 8 C 0.46 10.36 7.38 -154.98 -1.14 9.21 16 9 C -0.39 -9.03 8.71 -38.70 -0.34 -9.37 16 10 C 0.27 6.78 7.33 -17.19 -0.13 6.65 16 11 Cl -0.08 -1.81 29.15 -51.86 -1.51 -3.32 16 12 N -0.52 -14.63 7.86 -9.84 -0.08 -14.71 16 13 C 0.43 12.09 7.37 -158.35 -1.17 10.92 16 14 C -0.39 -10.55 9.37 -37.63 -0.35 -10.90 16 15 H 0.10 2.44 7.85 -52.48 -0.41 2.02 16 16 C 0.07 1.64 5.50 -17.36 -0.10 1.54 16 17 N -0.70 -18.43 11.42 55.55 0.63 -17.79 16 18 Si 0.92 18.24 29.56 -169.99 -5.02 13.22 16 19 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 21 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 22 N -0.63 -16.25 10.39 -11.89 -0.12 -16.37 16 23 C 0.50 8.41 6.32 36.00 0.23 8.64 16 24 O -0.51 -9.12 16.00 -18.75 -0.30 -9.42 16 25 O -0.34 -5.66 10.18 -39.26 -0.40 -6.06 16 26 C 0.06 0.81 6.21 37.16 0.23 1.04 16 27 C -0.15 -1.62 10.29 37.16 0.38 -1.24 16 28 H 0.10 1.32 8.06 -52.49 -0.42 0.89 16 29 H 0.10 1.37 8.05 -52.48 -0.42 0.95 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.41 6.42 8.95 -40.82 -0.37 6.05 16 34 H 0.11 2.41 6.13 -52.48 -0.32 2.09 16 35 H 0.28 6.57 8.29 -40.82 -0.34 6.23 16 36 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 368.99 15.07 5.56 5.56 Total: -1.00 -31.58 368.99 -9.56 -41.14 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -4.86 Total: 9.09 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: -3.22 Total: 10.84 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.19 Total: -61.06 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.70 Total: -15.48 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.02 Total: 13.22 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -1.51 Total: -3.32 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.58 -9.56 -41.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170914071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.949 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds