Wall clock time and date at job start Tue Mar 31 2020 20:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 119.99850 * 2 1 4 4 H 1.09003 * 115.54966 * 334.33579 * 3 2 1 5 5 C 1.53072 * 117.53287 * 188.61366 * 3 2 1 6 6 C 1.53000 * 59.98723 * 252.53510 * 5 3 2 7 7 N 1.46502 * 117.49966 * 107.50096 * 6 5 3 8 8 C 1.38538 * 119.99725 * 211.11613 * 7 6 5 9 9 C 1.40039 * 120.45352 * 6.94261 * 8 7 6 10 10 C 1.38797 * 118.59236 * 179.75626 * 9 8 7 11 11 Cl 1.73600 * 120.33693 * 180.23810 * 10 9 8 12 12 N 1.32201 * 119.32663 * 0.51801 * 10 9 8 13 13 C 1.33419 * 120.86171 * 359.72156 * 12 10 9 14 14 C 1.41571 * 119.23940 * 180.02562 * 13 12 10 15 15 H 1.08006 * 119.99841 * 180.02562 * 14 13 12 16 16 C 1.40047 * 120.00130 * 0.02562 * 14 13 12 17 17 N 1.30697 * 120.00159 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00443 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46776 * 89.99645 * 18 16 14 20 20 H 1.48495 * 109.47320 * 210.00122 * 18 16 14 21 21 H 1.48495 * 109.46683 * 330.00265 * 18 16 14 22 22 N 1.32576 * 120.44508 * 187.21608 * 8 7 6 23 23 C 1.50695 * 117.49585 * 252.49909 * 6 5 3 24 24 O 1.20827 * 120.00064 * 71.91210 * 23 6 5 25 25 O 1.34231 * 120.00029 * 251.89979 * 23 6 5 26 26 C 1.45198 * 116.99832 * 174.76212 * 25 23 6 27 27 C 1.53005 * 109.46858 * 184.83565 * 26 25 23 28 28 H 1.07997 * 120.00226 * 179.97438 * 1 2 3 29 29 H 1.08008 * 120.00012 * 359.97438 * 1 2 3 30 30 H 1.07990 * 120.00009 * 180.02562 * 2 1 3 31 31 H 1.09001 * 117.49325 * 145.04136 * 5 3 2 32 32 H 1.09006 * 117.51078 * 0.02562 * 5 3 2 33 33 H 0.97000 * 119.99837 * 30.83468 * 7 6 5 34 34 H 1.08004 * 120.69975 * 359.97438 * 9 8 7 35 35 H 0.96996 * 120.00533 * 179.97438 * 17 16 14 36 36 H 1.08991 * 109.47555 * 304.83767 * 26 25 23 37 37 H 1.09007 * 109.46987 * 64.84205 * 26 25 23 38 38 H 1.09003 * 109.47000 * 64.95478 * 27 26 25 39 39 H 1.08998 * 109.47062 * 184.95403 * 27 26 25 40 40 H 1.08999 * 109.47078 * 304.95612 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.5309 2.1555 -0.4259 5 6 3.5795 1.2470 -0.2033 6 6 3.0044 1.5777 1.1754 7 7 3.1043 0.5496 2.2143 8 6 2.1306 0.4598 3.1957 9 6 0.9752 1.2478 3.1235 10 6 0.0223 1.1229 4.1250 11 17 -1.4297 2.0732 4.0771 12 7 0.2343 0.2771 5.1186 13 6 1.3465 -0.4583 5.1659 14 6 1.5381 -1.3537 6.2456 15 1 2.4341 -1.9547 6.2963 16 6 0.5658 -1.4603 7.2479 17 7 -0.5187 -0.7334 7.1863 18 14 0.8182 -2.6423 8.6723 19 1 1.5235 -1.9433 9.7765 20 1 -0.5007 -3.1251 9.1545 21 1 1.6325 -3.7979 8.2180 22 7 2.2826 -0.3695 4.2189 23 6 3.1235 3.0010 1.6558 24 8 2.4452 3.8664 1.1550 25 8 3.9831 3.3074 2.6403 26 6 4.1310 4.7131 2.9724 27 6 5.2311 4.8757 4.0233 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 4.0437 2.0590 -0.7630 32 1 4.0322 0.2645 -0.3375 33 1 3.8500 -0.0707 2.2127 34 1 0.8271 1.9354 2.3039 35 1 -1.1923 -0.8075 7.8803 36 1 4.3993 5.2720 2.0760 37 1 3.1899 5.0935 3.3697 38 1 6.1885 4.5773 3.5962 39 1 5.2825 5.9183 4.3371 40 1 5.0061 4.2475 4.8851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170914071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:21 Heat of formation + Delta-G solvation = -7.925899 kcal Electronic energy + Delta-G solvation = -27203.142289 eV Core-core repulsion = 23238.076359 eV Total energy + Delta-G solvation = -3965.065930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.02172 -40.83845 -39.39030 -37.63268 -37.41242 -36.03237 -34.92725 -33.48164 -32.73942 -32.61731 -30.73258 -28.34122 -26.49475 -24.29806 -24.06751 -23.64357 -23.44219 -21.63849 -20.62566 -19.71443 -19.01841 -18.20213 -17.93670 -17.71837 -17.50129 -16.62381 -16.38315 -15.81073 -15.46982 -15.35656 -15.20575 -14.99067 -14.75877 -14.56764 -14.26852 -13.71151 -13.30871 -13.25626 -13.15903 -13.04283 -12.97947 -12.75717 -12.60817 -12.50645 -12.19186 -12.05750 -12.02763 -11.95436 -11.67199 -11.57672 -11.41589 -10.98331 -10.93533 -10.22208 -10.08678 -9.44511 -8.91713 -8.43610 -6.78976 0.61814 0.83198 1.06237 1.10548 1.20395 1.43016 1.53022 1.59414 1.69850 2.01411 2.22941 2.72768 2.76861 3.51215 3.53411 3.62824 3.88673 3.92645 4.00266 4.04149 4.17864 4.22408 4.25621 4.44603 4.55882 4.62458 4.65887 4.74699 4.84919 4.87436 4.96270 5.05411 5.09778 5.15176 5.27440 5.36638 5.69817 5.84004 5.91711 6.14809 6.45534 6.55878 6.66543 6.71635 7.18239 8.17535 8.36563 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010859 B = 0.004283 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.860845 B = 6536.160724 C = 7094.255351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.123 4.123 3 C -0.092 4.092 4 H 0.123 0.877 5 C -0.094 4.094 6 C 0.086 3.914 7 N -0.665 5.665 8 C 0.463 3.537 9 C -0.382 4.382 10 C 0.246 3.754 11 Cl -0.063 7.063 12 N -0.558 5.558 13 C 0.408 3.592 14 C -0.424 4.424 15 H 0.098 0.902 16 C 0.025 3.975 17 N -0.740 5.740 18 Si 1.000 3.000 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.253 1.253 22 N -0.653 5.653 23 C 0.495 3.505 24 O -0.526 6.526 25 O -0.357 6.357 26 C 0.052 3.948 27 C -0.145 4.145 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.415 0.585 34 H 0.117 0.883 35 H 0.284 0.716 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.601 4.679 -11.088 14.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.141 4.141 3 C -0.111 4.111 4 H 0.141 0.859 5 C -0.131 4.131 6 C -0.006 4.006 7 N -0.302 5.302 8 C 0.215 3.785 9 C -0.415 4.415 10 C 0.068 3.932 11 Cl -0.035 7.035 12 N -0.281 5.281 13 C 0.171 3.829 14 C -0.460 4.460 15 H 0.116 0.884 16 C -0.200 4.200 17 N -0.361 5.361 18 Si 0.819 3.181 19 H -0.185 1.185 20 H -0.190 1.190 21 H -0.176 1.176 22 N -0.383 5.383 23 C 0.337 3.663 24 O -0.414 6.414 25 O -0.273 6.273 26 C -0.021 4.021 27 C -0.202 4.202 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.137 0.863 31 H 0.155 0.845 32 H 0.163 0.837 33 H 0.254 0.746 34 H 0.135 0.865 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.143 4.598 -10.367 13.962 hybrid contribution -0.577 0.524 0.174 0.799 sum 7.566 5.122 -10.193 13.689 Atomic orbital electron populations 1.23852 0.96299 1.02061 0.99314 1.22110 0.95388 0.95845 1.00708 1.21944 0.93740 0.98711 0.96750 0.85884 1.23798 0.94474 1.06694 0.88126 1.19994 1.12795 0.82447 0.85364 1.42956 1.25985 1.34956 1.26342 1.18202 0.86071 0.87763 0.86429 1.20972 0.99150 1.15289 1.06045 1.21840 0.87522 0.91970 0.91916 1.98283 1.37697 1.69634 1.97933 1.68591 1.24103 1.11033 1.24349 1.19879 0.82236 0.90065 0.90697 1.19696 1.05396 1.18011 1.02846 0.88435 1.27087 0.93463 0.97696 1.01739 1.70235 1.05604 1.29948 1.30358 0.84947 0.79053 0.77952 0.76181 1.18549 1.18985 1.17591 1.68236 1.34543 1.29259 1.06291 1.23148 0.76075 0.90761 0.76298 1.90626 1.43450 1.50466 1.56904 1.86569 1.58621 1.31463 1.50622 1.23325 1.00614 0.77736 1.00447 1.21812 0.97314 1.03866 0.97179 0.87881 0.88918 0.86263 0.84477 0.83723 0.74637 0.86530 0.90487 0.89647 0.92707 0.90357 0.87674 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.94 14.35 67.78 0.97 -3.97 16 2 C -0.12 -3.18 8.83 25.65 0.23 -2.95 16 3 C -0.09 -2.25 4.90 -11.51 -0.06 -2.31 16 4 H 0.12 3.11 7.67 -2.39 -0.02 3.10 16 5 C -0.09 -1.63 9.87 30.62 0.30 -1.32 16 6 C 0.09 2.41 1.72 2.86 0.00 2.42 16 7 N -0.67 -22.45 4.96 -307.81 -1.53 -23.98 16 8 C 0.46 20.87 7.38 133.39 0.98 21.85 16 9 C -0.38 -17.84 8.71 22.84 0.20 -17.64 16 10 C 0.25 12.71 7.33 84.77 0.62 13.34 16 11 Cl -0.06 -2.84 29.15 -2.72 -0.08 -2.92 16 12 N -0.56 -32.06 7.86 -185.04 -1.45 -33.52 16 13 C 0.41 23.34 7.37 135.16 1.00 24.34 16 14 C -0.42 -23.22 9.37 23.53 0.22 -23.00 16 15 H 0.10 5.07 7.85 -2.91 -0.02 5.05 16 16 C 0.02 1.24 5.50 85.30 0.47 1.71 16 17 N -0.74 -39.64 11.42 21.84 0.25 -39.39 16 18 Si 1.00 37.34 29.56 68.60 2.03 39.36 16 19 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 20 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 21 H -0.25 -9.05 7.11 99.48 0.71 -8.35 16 22 N -0.65 -33.99 10.39 -191.54 -1.99 -35.98 16 23 C 0.49 16.15 6.32 71.23 0.45 16.60 16 24 O -0.53 -18.55 16.00 21.96 0.35 -18.20 16 25 O -0.36 -11.62 10.18 -51.42 -0.52 -12.15 16 26 C 0.05 1.35 6.21 71.98 0.45 1.80 16 27 C -0.14 -2.92 10.29 71.98 0.74 -2.18 16 28 H 0.10 2.71 8.06 -2.91 -0.02 2.69 16 29 H 0.09 2.61 8.05 -2.91 -0.02 2.59 16 30 H 0.12 2.86 8.06 -2.92 -0.02 2.84 16 31 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.14 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.41 12.42 8.95 -92.71 -0.83 11.59 16 34 H 0.12 5.19 6.13 -2.91 -0.02 5.17 16 35 H 0.28 13.69 8.29 -92.71 -0.77 12.92 16 36 H 0.09 1.87 8.10 -2.39 -0.02 1.85 16 37 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -70.83 368.99 3.89 -66.94 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.26 Total: 31.15 kcal Atomic # 6 Polarization: 22.10 SS G_CDS: 6.58 Total: 28.67 kcal Atomic # 7 Polarization: -128.15 SS G_CDS: -4.72 Total: -132.87 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.17 Total: -30.34 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.36 kcal Atomic # 17 Polarization: -2.84 SS G_CDS: -0.08 Total: -2.92 kcal Total: -70.83 3.89 -66.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170914071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.017 kcal (2) G-P(sol) polarization free energy of solvation -70.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds