Wall clock time and date at job start Tue Mar 31 2020 20:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00049 * 2 1 4 4 H 1.09002 * 115.54595 * 334.32960 * 3 2 1 5 5 C 1.53071 * 117.51732 * 188.60502 * 3 2 1 6 6 C 1.52998 * 59.98473 * 252.52260 * 5 3 2 7 7 N 1.46501 * 117.49693 * 252.49526 * 6 5 3 8 8 C 1.38544 * 119.99955 * 148.19801 * 7 6 5 9 9 C 1.40040 * 120.44393 * 3.91531 * 8 7 6 10 10 C 1.38808 * 118.58918 * 179.77786 * 9 8 7 11 11 Cl 1.73601 * 120.33860 * 180.24644 * 10 9 8 12 12 N 1.32209 * 119.32244 * 0.49588 * 10 9 8 13 13 C 1.33416 * 120.86023 * 359.74793 * 12 10 9 14 14 C 1.41575 * 119.23808 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00605 * 179.97438 * 14 13 12 16 16 C 1.40062 * 119.99778 * 359.97438 * 14 13 12 17 17 N 1.30690 * 119.99942 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00019 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46819 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47003 * 119.99562 * 18 16 14 21 21 H 1.48498 * 109.46818 * 240.00150 * 18 16 14 22 22 N 1.32559 * 120.44779 * 184.19259 * 8 7 6 23 23 C 1.50696 * 117.50010 * 107.50290 * 6 5 3 24 24 O 1.20826 * 119.99881 * 321.48783 * 23 6 5 25 25 O 1.34224 * 120.00308 * 141.48317 * 23 6 5 26 26 C 1.45206 * 117.00203 * 174.95993 * 25 23 6 27 27 C 1.52999 * 109.47284 * 184.98780 * 26 25 23 28 28 H 1.07992 * 120.00355 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.99607 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99963 * 179.97438 * 2 1 3 31 31 H 1.09002 * 117.51286 * 145.03724 * 5 3 2 32 32 H 1.09008 * 117.49161 * 0.02562 * 5 3 2 33 33 H 0.97004 * 120.00031 * 327.93072 * 7 6 5 34 34 H 1.07996 * 120.70679 * 0.02640 * 9 8 7 35 35 H 0.96993 * 119.99929 * 180.02562 * 17 16 14 36 36 H 1.08993 * 109.46895 * 304.98599 * 26 25 23 37 37 H 1.08995 * 109.47020 * 64.98784 * 26 25 23 38 38 H 1.09007 * 109.46943 * 304.99805 * 27 26 25 39 39 H 1.08998 * 109.47288 * 64.99130 * 27 26 25 40 40 H 1.08993 * 109.47343 * 184.99862 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.5309 2.1554 -0.4260 5 6 3.5795 1.2464 -0.2031 6 6 3.0043 1.5777 1.1754 7 7 3.1205 2.9615 1.6420 8 6 2.1436 3.4997 2.4639 9 6 1.0842 2.7059 2.9208 10 6 0.1294 3.2834 3.7463 11 17 -1.1994 2.3396 4.3440 12 7 0.2396 4.5608 4.0687 13 6 1.2565 5.2958 3.6153 14 6 1.3411 6.6605 3.9826 15 1 2.1593 7.2668 3.6230 16 6 0.3637 7.2242 4.8124 17 7 -0.6261 6.4904 5.2480 18 14 0.4749 9.0250 5.2965 19 1 1.6811 9.6305 4.6769 20 1 -0.7372 9.7405 4.8234 21 1 0.5698 9.1353 6.7743 22 7 2.1962 4.7743 2.8241 23 6 3.1066 0.5205 2.2444 24 8 2.9465 -0.6430 1.9608 25 8 3.3757 0.8714 3.5117 26 6 3.3484 -0.1845 4.5081 27 6 3.5540 0.4206 5.8983 28 1 -0.5400 0.9352 0.0004 29 1 -0.5399 -0.9354 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 4.0443 2.0580 -0.7629 32 1 4.0316 0.2636 -0.3372 33 1 3.8833 3.4997 1.3787 34 1 1.0139 1.6654 2.6401 35 1 -1.3032 6.8809 5.8223 36 1 2.3852 -0.6931 4.4721 37 1 4.1448 -0.8994 4.3017 38 1 4.4749 1.0038 5.9081 39 1 2.7114 1.0680 6.1410 40 1 3.6224 -0.3788 6.6360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170914076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:26 Heat of formation + Delta-G solvation = -5.294711 kcal Electronic energy + Delta-G solvation = -27380.395856 eV Core-core repulsion = 23415.444023 eV Total energy + Delta-G solvation = -3964.951833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.04108 -40.79314 -39.33855 -37.56550 -37.37801 -36.06094 -35.02168 -33.45682 -32.67451 -32.57927 -30.68882 -28.34546 -26.45402 -24.38859 -24.01915 -23.60322 -23.38546 -21.51139 -20.81870 -19.89618 -19.01988 -18.05922 -17.95056 -17.55561 -17.31103 -16.64640 -16.34931 -15.75239 -15.43726 -15.37769 -15.23603 -14.97997 -14.72489 -14.60507 -14.22905 -13.68887 -13.30008 -13.26032 -13.15390 -13.05385 -12.97065 -12.75416 -12.55937 -12.47636 -12.28345 -12.04717 -11.95662 -11.87838 -11.69547 -11.53840 -11.37463 -10.98839 -10.92513 -10.30599 -10.00374 -9.43454 -8.92292 -8.42877 -6.77705 0.63795 0.77773 1.08094 1.11955 1.36964 1.43976 1.53091 1.61144 1.66267 1.99938 2.23719 2.75574 2.77329 3.47441 3.52321 3.62089 3.90218 3.94547 4.00556 4.02830 4.19205 4.24386 4.27013 4.45573 4.56006 4.60992 4.66123 4.75454 4.82489 4.86079 4.96893 5.05707 5.09824 5.14916 5.27565 5.42549 5.70963 5.82848 5.91183 6.16252 6.44873 6.60090 6.69393 6.74755 7.19230 8.18673 8.37542 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.004063 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.006405 B = 6889.465726 C = 7029.839268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.129 4.129 3 C -0.093 4.093 4 H 0.121 0.879 5 C -0.091 4.091 6 C 0.083 3.917 7 N -0.672 5.672 8 C 0.463 3.537 9 C -0.374 4.374 10 C 0.247 3.753 11 Cl -0.062 7.062 12 N -0.558 5.558 13 C 0.409 3.591 14 C -0.425 4.425 15 H 0.097 0.903 16 C 0.025 3.975 17 N -0.739 5.739 18 Si 0.999 3.001 19 H -0.252 1.252 20 H -0.264 1.264 21 H -0.264 1.264 22 N -0.655 5.655 23 C 0.494 3.506 24 O -0.517 6.517 25 O -0.356 6.356 26 C 0.059 3.941 27 C -0.146 4.146 28 H 0.088 0.912 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.146 0.854 32 H 0.134 0.866 33 H 0.414 0.586 34 H 0.113 0.887 35 H 0.284 0.716 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.463 -10.240 -6.072 13.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.147 4.147 3 C -0.112 4.112 4 H 0.139 0.861 5 C -0.128 4.128 6 C -0.009 4.009 7 N -0.309 5.309 8 C 0.215 3.785 9 C -0.406 4.406 10 C 0.068 3.932 11 Cl -0.034 7.034 12 N -0.280 5.280 13 C 0.172 3.828 14 C -0.460 4.460 15 H 0.115 0.885 16 C -0.199 4.199 17 N -0.361 5.361 18 Si 0.818 3.182 19 H -0.176 1.176 20 H -0.188 1.188 21 H -0.189 1.189 22 N -0.385 5.385 23 C 0.337 3.663 24 O -0.406 6.406 25 O -0.272 6.272 26 C -0.015 4.015 27 C -0.203 4.203 28 H 0.106 0.894 29 H 0.133 0.867 30 H 0.145 0.855 31 H 0.164 0.836 32 H 0.152 0.848 33 H 0.253 0.747 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.112 -9.833 -5.646 12.881 hybrid contribution -0.345 -0.349 0.407 0.638 sum 5.767 -10.182 -5.238 12.820 Atomic orbital electron populations 1.23947 0.96025 1.02361 0.99678 1.22417 0.95629 0.96212 1.00482 1.21993 0.93772 0.98811 0.96653 0.86108 1.23792 0.94456 1.06227 0.88340 1.20120 1.12830 0.80568 0.87345 1.43115 1.24443 1.10240 1.53066 1.18204 0.86154 0.88166 0.85952 1.20855 1.02395 1.00917 1.16441 1.21826 0.88224 0.91415 0.91718 1.98283 1.47594 1.69750 1.87808 1.68594 1.26255 1.03732 1.29466 1.19869 0.82615 0.94208 0.86126 1.19717 1.09171 0.91988 1.25114 0.88517 1.27068 0.93379 1.05278 0.94184 1.70232 1.07376 1.38418 1.20077 0.84908 0.79808 0.74735 0.78740 1.17556 1.18818 1.18870 1.68227 1.33171 1.11689 1.25445 1.22921 0.71857 0.88514 0.83027 1.90595 1.47447 1.19960 1.82581 1.86636 1.80199 1.42537 1.17833 1.23213 1.02500 0.88739 0.87004 1.21785 1.02398 1.02516 0.93600 0.89394 0.86664 0.85478 0.83643 0.84786 0.74689 0.86934 0.90495 0.91879 0.89704 0.91658 0.93872 0.87258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.54 14.35 67.78 0.97 -3.56 16 2 C -0.13 -3.21 7.82 25.65 0.20 -3.01 16 3 C -0.09 -2.30 5.88 -11.52 -0.07 -2.37 16 4 H 0.12 3.15 8.14 -2.39 -0.02 3.14 16 5 C -0.09 -1.68 9.73 30.62 0.30 -1.38 16 6 C 0.08 2.35 1.83 2.85 0.01 2.35 16 7 N -0.67 -22.80 5.40 -307.83 -1.66 -24.47 16 8 C 0.46 20.76 7.35 133.39 0.98 21.74 16 9 C -0.37 -17.13 8.31 22.84 0.19 -16.94 16 10 C 0.25 12.49 7.33 84.77 0.62 13.11 16 11 Cl -0.06 -2.71 29.15 -2.72 -0.08 -2.79 16 12 N -0.56 -31.64 7.86 -185.02 -1.45 -33.10 16 13 C 0.41 23.20 7.37 135.16 1.00 24.19 16 14 C -0.42 -23.10 9.37 23.54 0.22 -22.88 16 15 H 0.10 5.03 7.85 -2.91 -0.02 5.00 16 16 C 0.03 1.27 5.50 85.31 0.47 1.73 16 17 N -0.74 -39.23 11.42 21.84 0.25 -38.98 16 18 Si 1.00 37.12 29.56 68.60 2.03 39.14 16 19 H -0.25 -9.03 7.11 99.48 0.71 -8.33 16 20 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 21 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 22 N -0.65 -33.93 10.39 -191.54 -1.99 -35.92 16 23 C 0.49 15.70 5.83 71.23 0.42 16.12 16 24 O -0.52 -16.33 13.88 21.97 0.30 -16.03 16 25 O -0.36 -12.19 8.88 -51.36 -0.46 -12.65 16 26 C 0.06 1.62 6.21 71.98 0.45 2.07 16 27 C -0.15 -3.65 10.29 71.98 0.74 -2.91 16 28 H 0.09 2.35 8.05 -2.91 -0.02 2.32 16 29 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.13 3.05 7.06 -2.91 -0.02 3.03 16 31 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.13 2.07 8.12 -2.38 -0.02 2.05 16 33 H 0.41 12.51 8.95 -92.71 -0.83 11.68 16 34 H 0.11 4.86 5.98 -2.91 -0.02 4.84 16 35 H 0.28 13.51 8.29 -92.71 -0.77 12.74 16 36 H 0.06 1.78 8.09 -2.39 -0.02 1.76 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -68.28 364.34 3.69 -64.59 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.26 Total: 31.93 kcal Atomic # 6 Polarization: 21.77 SS G_CDS: 6.49 Total: 28.26 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -4.86 Total: -132.47 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.15 Total: -28.67 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.14 kcal Atomic # 17 Polarization: -2.71 SS G_CDS: -0.08 Total: -2.79 kcal Total: -68.28 3.69 -64.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170914076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.296 kcal (2) G-P(sol) polarization free energy of solvation -68.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds