Wall clock time and date at job start Tue Mar 31 2020 19:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47008 * 79.11482 * 3 2 1 5 5 N 1.46504 * 109.47304 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00271 * 270.00475 * 5 4 3 7 7 C 1.50703 * 109.47067 * 269.99875 * 6 5 4 8 8 H 1.08005 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00286 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00046 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00272 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47206 * 59.99702 * 11 9 7 13 13 H 1.48496 * 109.47401 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47049 * 299.99735 * 11 9 7 15 15 C 1.34777 * 119.99854 * 89.99731 * 5 4 3 16 16 O 1.21279 * 120.00162 * 180.02562 * 15 5 4 17 17 C 1.50696 * 120.00141 * 0.02562 * 15 5 4 18 18 C 1.53002 * 109.47300 * 179.97438 * 17 15 5 19 19 C 1.50706 * 109.46925 * 180.02562 * 18 17 15 20 20 O 1.21279 * 120.00072 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99762 * 179.97438 * 19 18 17 22 22 C 1.39075 * 120.00246 * 179.97438 * 21 19 18 23 23 N 1.29890 * 125.64779 * 0.03027 * 22 21 19 24 24 N 1.26250 * 117.66048 * 179.97438 * 23 22 21 25 25 C 1.29522 * 116.57627 * 0.02562 * 24 23 22 26 26 S 1.71303 * 125.65707 * 179.71781 * 22 21 19 27 27 H 1.09001 * 109.47555 * 319.11701 * 3 2 1 28 28 H 1.09005 * 109.46995 * 199.11251 * 3 2 1 29 29 H 1.08999 * 109.47510 * 59.99853 * 4 3 2 30 30 H 1.08996 * 109.47306 * 299.99753 * 4 3 2 31 31 H 1.08997 * 109.47346 * 29.99460 * 6 5 4 32 32 H 1.08999 * 109.47701 * 150.00044 * 6 5 4 33 33 H 0.97007 * 120.00737 * 179.97438 * 10 9 7 34 34 H 1.09004 * 109.47043 * 59.99777 * 17 15 5 35 35 H 1.09004 * 109.47476 * 299.99851 * 17 15 5 36 36 H 1.09000 * 109.46497 * 60.00269 * 18 17 15 37 37 H 1.09000 * 109.47312 * 300.00049 * 18 17 15 38 38 H 0.96999 * 120.00047 * 0.02562 * 21 19 18 39 39 H 1.07999 * 126.14499 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1180 -0.2715 -1.4166 5 7 4.5831 -0.2703 -1.4167 6 6 5.3145 0.9762 -1.6565 7 6 5.5654 1.1351 -3.1340 8 1 5.2153 0.3827 -3.8252 9 6 6.2427 2.2406 -3.6032 10 7 6.6693 3.1566 -2.7616 11 14 6.5543 2.4373 -5.4346 12 1 5.2569 2.4785 -6.1558 13 1 7.2967 3.7002 -5.6776 14 1 7.3576 1.2890 -5.9261 15 6 5.2579 -1.4159 -1.1962 16 8 6.4707 -1.4148 -1.1959 17 6 4.5056 -2.6982 -0.9500 18 6 5.5008 -3.8394 -0.7308 19 6 4.7483 -5.1219 -0.4852 20 8 3.5355 -5.1230 -0.4859 21 7 5.4231 -6.2677 -0.2657 22 6 4.7288 -7.4511 -0.0385 23 7 3.4363 -7.5778 -0.0143 24 7 2.9642 -8.7277 0.2060 25 6 3.8218 -9.6809 0.3891 26 16 5.4363 -8.9846 0.2482 27 1 2.9717 -0.7761 0.6726 28 1 2.9708 0.9719 0.3365 29 1 2.7544 0.5052 -2.0893 30 1 2.7552 -1.2427 -1.7531 31 1 4.7248 1.8187 -1.2955 32 1 6.2670 0.9461 -1.1275 33 1 7.1462 3.9342 -3.0916 34 1 3.8793 -2.9235 -1.8132 35 1 3.8786 -2.5875 -0.0652 36 1 6.1273 -3.6143 0.1323 37 1 6.1274 -3.9501 -1.6157 38 1 6.3931 -6.2668 -0.2655 39 1 3.5900 -10.7168 0.5880 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177449849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:51 Heat of formation + Delta-G solvation = 31.357807 kcal Electronic energy + Delta-G solvation = -25445.965817 eV Core-core repulsion = 21516.939814 eV Total energy + Delta-G solvation = -3929.026003 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.65333 -40.20471 -39.19759 -36.82419 -35.67415 -35.29031 -33.24013 -32.62331 -30.88398 -30.81353 -27.99727 -26.90058 -25.30306 -23.99421 -23.11244 -22.00156 -20.24647 -19.70566 -18.55806 -17.85934 -17.69915 -17.27913 -16.61033 -16.47826 -16.15539 -15.67995 -15.46967 -15.04118 -14.71335 -14.54710 -14.23759 -14.11803 -13.70377 -13.65494 -13.12803 -12.76928 -12.42423 -12.38475 -12.19601 -11.97423 -11.82206 -11.66489 -11.31549 -11.22950 -11.02967 -11.00189 -10.79524 -10.71770 -10.61878 -10.22703 -10.12431 -10.04729 -9.75657 -9.23207 -9.10374 -8.49658 -7.89135 -6.11468 -4.16253 0.06612 0.17455 0.79337 2.05987 2.32337 2.53845 2.79263 2.89138 3.22909 3.28562 3.33224 3.36562 3.60770 3.92490 4.18755 4.31144 4.40075 4.55365 4.86212 4.97386 5.00199 5.03127 5.15190 5.20098 5.24591 5.46385 5.53110 5.55728 5.78845 5.85680 5.90656 6.12148 6.54805 6.89632 7.31606 7.38899 7.60132 7.64999 7.84176 8.14225 8.21107 8.30261 8.77664 8.92736 9.49337 10.96588 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012728 B = 0.002499 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.331071 B =11200.340156 C =12774.941685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.217 3.783 3 C -0.049 4.049 4 C 0.115 3.885 5 N -0.595 5.595 6 C 0.244 3.756 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.509 3.491 16 O -0.538 6.538 17 C -0.132 4.132 18 C -0.117 4.117 19 C 0.508 3.492 20 O -0.465 6.465 21 N -0.630 5.630 22 C 0.239 3.761 23 N -0.277 5.277 24 N -0.224 5.224 25 C -0.025 4.025 26 S 0.101 5.899 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.428 0.572 39 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 -22.432 8.118 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.102 4.102 3 C -0.091 4.091 4 C -0.011 4.011 5 N -0.325 5.325 6 C 0.126 3.874 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.296 3.704 16 O -0.415 6.415 17 C -0.172 4.172 18 C -0.157 4.157 19 C 0.293 3.707 20 O -0.331 6.331 21 N -0.283 5.283 22 C -0.131 4.131 23 N -0.122 5.122 24 N -0.059 5.059 25 C -0.328 4.328 26 S 0.338 5.662 27 H 0.124 0.876 28 H 0.134 0.866 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.267 0.733 39 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.367 -21.941 8.059 23.414 hybrid contribution 1.144 0.088 -1.012 1.530 sum -0.223 -21.853 7.047 22.962 Atomic orbital electron populations 1.81203 1.13071 1.09309 1.08563 1.29066 0.95093 0.92831 0.93164 1.19870 0.81452 1.06330 1.01425 1.21346 0.81994 1.03855 0.93899 1.48194 1.04992 1.10585 1.68776 1.19360 0.92621 0.78585 0.96880 1.21374 1.36838 1.06318 0.92292 0.92416 1.24910 0.95309 0.95672 0.98058 1.69904 1.38199 1.10769 1.34371 0.86580 0.78413 0.77424 0.85136 1.20230 1.21208 1.20196 1.20223 0.87992 0.84780 0.77454 1.90686 1.13734 1.85785 1.51328 1.21529 0.98435 0.92268 1.05002 1.21405 0.98982 0.89184 1.06178 1.21509 0.88871 0.84447 0.75866 1.90868 1.13371 1.84719 1.44189 1.43294 1.10686 1.04113 1.70244 1.26188 0.92712 0.93037 1.01139 1.71556 1.06627 1.14228 1.19775 1.71421 1.29357 0.94103 1.10991 1.31206 0.88308 1.05647 1.07593 1.84886 1.12434 1.00595 1.68284 0.87562 0.86552 0.88735 0.90293 0.94679 0.93509 0.92595 0.88265 0.88497 0.87151 0.87079 0.73330 0.76438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.01 18.54 42.15 0.78 -6.23 16 2 C 0.22 2.82 15.43 -20.76 -0.32 2.50 16 3 C -0.05 -0.54 6.03 -29.52 -0.18 -0.71 16 4 C 0.12 1.55 5.17 -4.04 -0.02 1.53 16 5 N -0.59 -10.47 2.46 -175.06 -0.43 -10.90 16 6 C 0.24 5.61 5.16 -5.19 -0.03 5.59 16 7 C -0.53 -13.82 9.39 -34.44 -0.32 -14.15 16 8 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 11 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.51 8.60 7.67 -10.99 -0.08 8.52 16 16 O -0.54 -11.18 15.56 5.56 0.09 -11.09 16 17 C -0.13 -1.61 3.54 -27.88 -0.10 -1.70 16 18 C -0.12 -1.17 4.99 -27.88 -0.14 -1.31 16 19 C 0.51 5.55 7.79 -10.98 -0.09 5.46 16 20 O -0.46 -7.03 14.66 5.56 0.08 -6.94 16 21 N -0.63 -5.23 5.41 -12.92 -0.07 -5.30 16 22 C 0.24 2.40 8.14 -87.06 -0.71 1.69 16 23 N -0.28 -3.80 9.74 29.97 0.29 -3.50 16 24 N -0.22 -2.68 11.65 30.52 0.36 -2.32 16 25 C -0.02 -0.17 12.69 51.79 0.66 0.48 16 26 S 0.10 0.60 23.31 -107.50 -2.51 -1.91 16 27 H 0.11 0.95 7.22 -51.93 -0.38 0.58 16 28 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.08 0.93 6.44 -51.93 -0.33 0.59 16 31 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.05 1.22 7.42 -51.93 -0.39 0.84 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.10 1.20 7.36 -51.93 -0.38 0.82 16 35 H 0.10 1.04 7.15 -51.93 -0.37 0.67 16 36 H 0.11 0.97 8.10 -51.93 -0.42 0.55 16 37 H 0.11 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.43 1.80 8.82 -40.82 -0.36 1.44 16 39 H 0.22 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 366.00 15.07 5.52 5.52 Total: -1.00 -37.77 366.00 -5.88 -43.65 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -4.28 Total: -1.99 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -1.43 Total: 9.49 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 1.67 Total: -52.60 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.17 Total: -18.04 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.51 Total: -1.91 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.77 -5.88 -43.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177449849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.009 kcal (2) G-P(sol) polarization free energy of solvation -37.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds