Wall clock time and date at job start Tue Mar 31 2020 19:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47008 * 79.11482 * 3 2 1 5 5 N 1.46504 * 109.47304 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00271 * 270.00475 * 5 4 3 7 7 C 1.50703 * 109.47067 * 269.99875 * 6 5 4 8 8 H 1.08005 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00286 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00046 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00272 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47206 * 59.99702 * 11 9 7 13 13 H 1.48496 * 109.47401 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47049 * 299.99735 * 11 9 7 15 15 C 1.34777 * 119.99854 * 89.99731 * 5 4 3 16 16 O 1.21279 * 120.00162 * 180.02562 * 15 5 4 17 17 C 1.50696 * 120.00141 * 0.02562 * 15 5 4 18 18 C 1.53002 * 109.47300 * 179.97438 * 17 15 5 19 19 C 1.50706 * 109.46925 * 180.02562 * 18 17 15 20 20 O 1.21279 * 120.00072 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99762 * 179.97438 * 19 18 17 22 22 C 1.39075 * 120.00246 * 179.97438 * 21 19 18 23 23 N 1.29890 * 125.64779 * 0.03027 * 22 21 19 24 24 N 1.26250 * 117.66048 * 179.97438 * 23 22 21 25 25 C 1.29522 * 116.57627 * 0.02562 * 24 23 22 26 26 S 1.71303 * 125.65707 * 179.71781 * 22 21 19 27 27 H 1.09001 * 109.47555 * 319.11701 * 3 2 1 28 28 H 1.09005 * 109.46995 * 199.11251 * 3 2 1 29 29 H 1.08999 * 109.47510 * 59.99853 * 4 3 2 30 30 H 1.08996 * 109.47306 * 299.99753 * 4 3 2 31 31 H 1.08997 * 109.47346 * 29.99460 * 6 5 4 32 32 H 1.08999 * 109.47701 * 150.00044 * 6 5 4 33 33 H 0.97007 * 120.00737 * 179.97438 * 10 9 7 34 34 H 1.09004 * 109.47043 * 59.99777 * 17 15 5 35 35 H 1.09004 * 109.47476 * 299.99851 * 17 15 5 36 36 H 1.09000 * 109.46497 * 60.00269 * 18 17 15 37 37 H 1.09000 * 109.47312 * 300.00049 * 18 17 15 38 38 H 0.96999 * 120.00047 * 0.02562 * 21 19 18 39 39 H 1.07999 * 126.14499 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1180 -0.2715 -1.4166 5 7 4.5831 -0.2703 -1.4167 6 6 5.3145 0.9762 -1.6565 7 6 5.5654 1.1351 -3.1340 8 1 5.2153 0.3827 -3.8252 9 6 6.2427 2.2406 -3.6032 10 7 6.6693 3.1566 -2.7616 11 14 6.5543 2.4373 -5.4346 12 1 5.2569 2.4785 -6.1558 13 1 7.2967 3.7002 -5.6776 14 1 7.3576 1.2890 -5.9261 15 6 5.2579 -1.4159 -1.1962 16 8 6.4707 -1.4148 -1.1959 17 6 4.5056 -2.6982 -0.9500 18 6 5.5008 -3.8394 -0.7308 19 6 4.7483 -5.1219 -0.4852 20 8 3.5355 -5.1230 -0.4859 21 7 5.4231 -6.2677 -0.2657 22 6 4.7288 -7.4511 -0.0385 23 7 3.4363 -7.5778 -0.0143 24 7 2.9642 -8.7277 0.2060 25 6 3.8218 -9.6809 0.3891 26 16 5.4363 -8.9846 0.2482 27 1 2.9717 -0.7761 0.6726 28 1 2.9708 0.9719 0.3365 29 1 2.7544 0.5052 -2.0893 30 1 2.7552 -1.2427 -1.7531 31 1 4.7248 1.8187 -1.2955 32 1 6.2670 0.9461 -1.1275 33 1 7.1462 3.9342 -3.0916 34 1 3.8793 -2.9235 -1.8132 35 1 3.8786 -2.5875 -0.0652 36 1 6.1273 -3.6143 0.1323 37 1 6.1274 -3.9501 -1.6157 38 1 6.3931 -6.2668 -0.2655 39 1 3.5900 -10.7168 0.5880 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177449849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:50 Heat of formation + Delta-G solvation = 4.086804 kcal Electronic energy + Delta-G solvation = -25447.148376 eV Core-core repulsion = 21516.939814 eV Total energy + Delta-G solvation = -3930.208562 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.36737 -41.15393 -40.43180 -37.99536 -36.69477 -36.44041 -34.90545 -33.87709 -32.13439 -31.60011 -29.48981 -27.88007 -26.36374 -25.29774 -24.39557 -23.08497 -20.94556 -20.40743 -19.83119 -18.85495 -18.56018 -18.36980 -18.25241 -17.38758 -17.33403 -16.89209 -16.58882 -16.14975 -15.70815 -15.68992 -15.56751 -15.13688 -14.72718 -14.42466 -14.30197 -14.18407 -13.76327 -13.60379 -13.53103 -13.31326 -12.90998 -12.89680 -12.68044 -12.61819 -12.44880 -12.22858 -12.12543 -11.77802 -11.70030 -11.65637 -11.40354 -10.83067 -10.65905 -10.55563 -10.54696 -9.93183 -9.44837 -8.15334 -6.27238 -0.52995 -0.38874 0.21878 1.30709 1.42744 1.44349 1.51351 1.64855 1.69976 1.80679 1.84101 1.92168 2.33105 2.47793 3.07418 3.16539 3.28960 3.61246 3.86402 3.92077 4.09035 4.09832 4.15582 4.18158 4.52919 4.55472 4.67023 4.84043 4.86836 4.90505 5.01334 5.09827 5.16632 5.37751 5.63764 5.89938 5.95290 6.16020 6.60366 6.75692 6.84016 6.86147 7.36297 7.52757 7.65740 8.91019 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012728 B = 0.002499 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.331071 B =11200.340156 C =12774.941685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.244 3.756 3 C -0.038 4.038 4 C 0.114 3.886 5 N -0.598 5.598 6 C 0.259 3.741 7 C -0.540 4.540 8 H 0.053 0.947 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.956 3.044 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.277 1.277 15 C 0.508 3.492 16 O -0.581 6.581 17 C -0.121 4.121 18 C -0.110 4.110 19 C 0.516 3.484 20 O -0.511 6.511 21 N -0.618 5.618 22 C 0.207 3.793 23 N -0.330 5.330 24 N -0.277 5.277 25 C -0.013 4.013 26 S 0.190 5.810 27 H 0.135 0.865 28 H 0.124 0.876 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.032 0.968 32 H 0.010 0.990 33 H 0.265 0.735 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.446 0.554 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.464 -24.798 8.245 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.073 4.073 3 C -0.079 4.079 4 C -0.011 4.011 5 N -0.328 5.328 6 C 0.138 3.862 7 C -0.578 4.578 8 H 0.071 0.929 9 C -0.187 4.187 10 N -0.565 5.565 11 Si 0.781 3.219 12 H -0.192 1.192 13 H -0.209 1.209 14 H -0.202 1.202 15 C 0.297 3.703 16 O -0.461 6.461 17 C -0.161 4.161 18 C -0.150 4.150 19 C 0.302 3.698 20 O -0.381 6.381 21 N -0.273 5.273 22 C -0.163 4.163 23 N -0.175 5.175 24 N -0.111 5.111 25 C -0.316 4.316 26 S 0.428 5.572 27 H 0.153 0.847 28 H 0.142 0.858 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.050 0.950 32 H 0.028 0.972 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.135 0.865 36 H 0.144 0.856 37 H 0.135 0.865 38 H 0.288 0.712 39 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -0.683 -24.350 8.193 25.701 hybrid contribution 1.037 0.656 -1.007 1.587 sum 0.354 -23.694 7.186 24.762 Atomic orbital electron populations 1.81238 1.14554 1.11089 1.10087 1.29234 0.95096 0.91271 0.91699 1.19853 0.79926 1.07830 1.00261 1.21485 0.79394 1.04831 0.95425 1.48070 1.06548 1.09289 1.68883 1.18825 0.91628 0.80978 0.94779 1.21726 1.36313 1.05956 0.93842 0.92865 1.25693 0.95327 0.95625 1.02069 1.70009 1.39120 1.11298 1.36088 0.85647 0.78541 0.77244 0.80452 1.19209 1.20858 1.20203 1.20982 0.87659 0.85684 0.75988 1.90663 1.15853 1.86498 1.53096 1.21465 0.98516 0.90044 1.06067 1.21351 0.98409 0.88111 1.07170 1.21495 0.88187 0.85154 0.74929 1.90856 1.15224 1.85501 1.46562 1.43057 1.11435 1.03312 1.69466 1.26415 0.92944 0.94991 1.01927 1.71484 1.08937 1.15842 1.21266 1.71369 1.31113 0.94697 1.13927 1.32005 0.88915 1.06650 1.04034 1.84574 1.09933 0.96573 1.66130 0.84739 0.85777 0.89842 0.88091 0.94952 0.97178 0.92598 0.87774 0.86484 0.85613 0.86520 0.71171 0.72441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.19 18.54 20.00 0.37 -14.82 16 2 C 0.24 6.01 15.43 89.44 1.38 7.39 16 3 C -0.04 -0.75 6.03 28.79 0.17 -0.57 16 4 C 0.11 2.91 5.17 86.38 0.45 3.36 16 5 N -0.60 -20.81 2.46 -826.17 -2.03 -22.84 16 6 C 0.26 12.13 5.16 85.63 0.44 12.57 16 7 C -0.54 -28.49 9.39 25.60 0.24 -28.25 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.01 0.65 5.46 84.65 0.46 1.12 16 10 N -0.93 -52.74 13.29 21.44 0.28 -52.45 16 11 Si 0.96 42.92 29.54 68.60 2.03 44.94 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 14 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 15 C 0.51 16.83 7.67 87.66 0.67 17.50 16 16 O -0.58 -24.24 15.56 -3.03 -0.05 -24.29 16 17 C -0.12 -2.75 3.54 29.85 0.11 -2.64 16 18 C -0.11 -2.03 4.99 29.85 0.15 -1.88 16 19 C 0.52 10.71 7.79 87.66 0.68 11.39 16 20 O -0.51 -15.28 14.66 -3.03 -0.04 -15.32 16 21 N -0.62 -9.32 5.41 -313.16 -1.69 -11.02 16 22 C 0.21 3.89 8.14 179.10 1.46 5.35 16 23 N -0.33 -8.99 9.74 -59.10 -0.58 -9.57 16 24 N -0.28 -6.45 11.65 -57.36 -0.67 -7.11 16 25 C -0.01 -0.15 12.69 130.58 1.66 1.50 16 26 S 0.19 1.67 23.31 -56.49 -1.32 0.36 16 27 H 0.13 2.01 7.22 -2.39 -0.02 1.99 16 28 H 0.12 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 30 H 0.10 2.18 6.44 -2.39 -0.02 2.16 16 31 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 32 H 0.01 0.55 7.42 -2.39 -0.02 0.53 16 33 H 0.27 14.38 8.31 -92.70 -0.77 13.61 16 34 H 0.10 2.34 7.36 -2.38 -0.02 2.32 16 35 H 0.12 2.22 7.15 -2.39 -0.02 2.20 16 36 H 0.13 1.96 8.10 -2.39 -0.02 1.94 16 37 H 0.12 2.06 8.10 -2.39 -0.02 2.04 16 38 H 0.45 2.79 8.82 -92.71 -0.82 1.97 16 39 H 0.26 0.31 8.06 -2.91 -0.02 0.28 16 Total: -1.00 -85.95 366.00 4.48 -81.46 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 0.30 Total: 3.82 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 7.87 Total: 26.84 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -4.31 Total: -117.81 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -0.09 Total: -39.61 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -1.32 Total: 0.36 kcal Total: -85.95 4.48 -81.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177449849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.550 kcal (2) G-P(sol) polarization free energy of solvation -85.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds