Wall clock time and date at job start Tue Mar 31 2020 20:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42896 * 109.46764 * 2 1 4 4 C 1.35717 * 116.99549 * 179.97438 * 3 2 1 5 5 C 1.38837 * 119.59812 * 180.27862 * 4 3 2 6 6 C 1.39629 * 118.95977 * 180.27187 * 5 4 3 7 7 C 1.48089 * 120.90004 * 179.73428 * 6 5 4 8 8 O 1.21520 * 120.00066 * 235.46321 * 7 6 5 9 9 N 1.34772 * 120.00130 * 55.46564 * 7 6 5 10 10 C 1.46501 * 119.99888 * 5.28191 * 9 7 6 11 11 C 1.50692 * 109.47240 * 269.99937 * 10 9 7 12 12 H 1.08000 * 119.99950 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00256 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99813 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00247 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46876 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46897 * 120.00420 * 15 13 11 18 18 H 1.48499 * 109.47202 * 240.00218 * 15 13 11 19 19 C 1.46495 * 119.99925 * 185.28037 * 9 7 6 20 20 C 1.52998 * 109.47241 * 265.30145 * 19 9 7 21 21 C 1.47205 * 109.47055 * 180.02562 * 20 19 9 22 22 N 9.18693 * 145.67879 * 198.19541 * 4 1 2 23 23 C 1.40075 * 118.19495 * 359.46812 * 6 5 4 24 24 Cl 1.73602 * 120.44968 * 180.29209 * 23 6 5 25 25 C 1.38148 * 119.09555 * 0.26729 * 23 6 5 26 26 N 1.31877 * 120.95761 * 0.02562 * 25 23 6 27 27 H 1.08992 * 109.47082 * 299.99433 * 1 2 3 28 28 H 1.08997 * 109.47128 * 59.99972 * 1 2 3 29 29 H 1.09004 * 109.46660 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46660 * 240.00365 * 2 1 3 31 31 H 1.08997 * 109.47128 * 120.00028 * 2 1 3 32 32 H 1.07997 * 120.52673 * 0.03179 * 5 4 3 33 33 H 1.09001 * 109.47325 * 30.00038 * 10 9 7 34 34 H 1.08999 * 109.47016 * 149.99860 * 10 9 7 35 35 H 0.97001 * 120.00023 * 179.97438 * 14 13 11 36 36 H 1.08999 * 109.47135 * 25.30438 * 19 9 7 37 37 H 1.09010 * 109.47173 * 145.30233 * 19 9 7 38 38 H 1.08999 * 109.47296 * 300.00195 * 20 19 9 39 39 H 1.08995 * 109.47352 * 60.00046 * 20 19 9 40 40 H 1.07997 * 119.51990 * 180.02562 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3518 1.5251 0.0005 5 6 3.8734 2.8117 0.0064 6 6 5.2596 2.9792 0.0011 7 6 5.8622 4.3320 0.0012 8 8 6.6509 4.6459 -0.8684 9 7 5.5359 5.2150 0.9656 10 6 4.6765 4.8010 2.0775 11 6 3.2343 5.0462 1.7160 12 1 2.9829 5.4686 0.7544 13 6 2.2356 4.7313 2.6129 14 7 2.5417 4.2173 3.7841 15 14 0.4478 5.0359 2.1650 16 1 0.3715 5.6172 0.8007 17 1 -0.2965 3.7513 2.1978 18 1 -0.1528 5.9809 3.1405 19 6 6.0406 6.5888 0.9021 20 6 7.3209 6.7007 1.7322 21 6 7.8277 8.0813 1.6688 22 7 8.2199 9.1458 1.6207 23 6 6.0648 1.8330 0.0015 24 17 7.7951 1.9733 0.0027 25 6 5.4631 0.5894 0.0014 26 7 4.1497 0.4713 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 3.2174 3.6696 0.0111 33 1 4.8258 3.7397 2.2765 34 1 4.9310 5.3767 2.9673 35 1 1.8391 3.9961 4.4153 36 1 6.2555 6.8494 -0.1342 37 1 5.2889 7.2708 1.2999 38 1 7.1060 6.4401 2.7685 39 1 8.0725 6.0188 1.3345 40 1 6.0773 -0.2989 0.0021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185504626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:37 Heat of formation + Delta-G solvation = -15.713724 kcal Electronic energy + Delta-G solvation = -27057.298169 eV Core-core repulsion = 23091.894534 eV Total energy + Delta-G solvation = -3965.403635 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.62052 -39.28021 -37.71884 -36.68553 -36.22620 -35.36080 -33.20952 -32.43304 -31.85779 -30.85361 -29.51057 -27.42924 -25.43499 -23.74279 -23.40539 -22.95314 -22.13736 -19.55834 -17.89076 -17.44342 -16.92282 -16.71965 -16.44795 -16.16571 -15.97465 -15.36678 -14.72383 -14.58792 -14.46841 -14.00152 -13.94139 -13.68975 -13.35585 -12.96751 -12.63507 -12.62560 -12.53542 -12.36182 -12.29997 -12.06199 -11.72811 -11.56541 -11.47362 -11.43460 -11.09406 -10.96904 -10.91731 -10.72801 -10.49848 -10.36327 -9.99703 -9.80262 -9.47668 -9.18227 -8.69596 -8.10390 -8.07271 -6.33286 -4.40149 1.08773 1.29651 2.27638 2.79067 2.93116 2.99127 3.16034 3.25747 3.27656 3.29561 3.52693 3.92859 4.22098 4.27936 4.41203 4.85647 5.01037 5.06431 5.09966 5.16437 5.19033 5.25946 5.28023 5.45268 5.63684 5.66358 5.81022 5.91282 5.94613 6.00493 6.10740 6.16749 6.17964 6.44603 6.60160 6.98981 7.24320 7.45303 7.57351 7.68479 7.85036 7.93184 7.95928 8.52077 8.67783 9.26249 10.73038 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009125 B = 0.005475 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.779187 B = 5112.985169 C = 7600.407758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.066 3.934 3 O -0.295 6.295 4 C 0.322 3.678 5 C -0.108 4.108 6 C -0.035 4.035 7 C 0.565 3.435 8 O -0.540 6.540 9 N -0.585 5.585 10 C 0.233 3.767 11 C -0.545 4.545 12 H 0.066 0.934 13 C 0.075 3.925 14 N -0.880 5.880 15 Si 0.889 3.111 16 H -0.269 1.269 17 H -0.278 1.278 18 H -0.283 1.283 19 C 0.127 3.873 20 C -0.046 4.046 21 C 0.221 3.779 22 N -0.449 5.449 23 C -0.093 4.093 24 Cl -0.050 7.050 25 C 0.136 3.864 26 N -0.523 5.523 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.181 0.819 33 H 0.039 0.961 34 H 0.044 0.956 35 H 0.267 0.733 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.490 -8.400 -4.433 9.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.009 4.009 3 O -0.202 6.202 4 C 0.143 3.857 5 C -0.129 4.129 6 C -0.046 4.046 7 C 0.351 3.649 8 O -0.418 6.418 9 N -0.315 5.315 10 C 0.114 3.886 11 C -0.583 4.583 12 H 0.084 0.916 13 C -0.130 4.130 14 N -0.517 5.517 15 Si 0.717 3.283 16 H -0.194 1.194 17 H -0.204 1.204 18 H -0.209 1.209 19 C 0.002 3.998 20 C -0.088 4.088 21 C -0.097 4.097 22 N -0.127 5.127 23 C -0.123 4.123 24 Cl -0.021 7.021 25 C -0.020 4.020 26 N -0.248 5.248 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.198 0.802 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.933 -7.315 -4.750 8.934 hybrid contribution -0.740 0.161 0.209 0.786 sum 1.193 -7.154 -4.541 8.557 Atomic orbital electron populations 1.21820 0.93310 1.02504 1.03538 1.22575 0.94674 0.81415 1.02246 1.86323 1.16368 1.30079 1.87445 1.19689 0.84068 0.89526 0.92393 1.21924 0.94055 0.97741 0.99173 1.19854 0.92738 0.93527 0.98462 1.17927 0.80959 0.84006 0.82004 1.90752 1.34687 1.78397 1.37996 1.48123 1.48586 1.09441 1.25351 1.19588 0.88605 0.96834 0.83590 1.21421 0.90570 1.43881 1.02429 0.91554 1.24874 0.99295 0.94234 0.94608 1.69911 1.33632 1.41228 1.06880 0.86551 0.84610 0.78318 0.78867 1.19363 1.20387 1.20886 1.21180 0.93497 0.84330 1.00824 1.19770 0.99438 0.84907 1.04645 1.29057 0.93069 0.94840 0.92690 1.81161 1.09657 1.12489 1.09358 1.21745 0.86138 0.94772 1.09653 1.98360 1.08508 1.98310 1.96952 1.22092 0.89132 0.95218 0.95550 1.67214 1.05486 1.33286 1.18770 0.91463 0.91729 0.90554 0.91829 0.91595 0.80160 0.94325 0.93794 0.92364 0.89600 0.88965 0.86857 0.87200 0.81672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 37.16 0.38 -1.35 16 2 C 0.07 0.90 6.03 37.16 0.22 1.12 16 3 O -0.30 -5.15 10.11 -18.86 -0.19 -5.35 16 4 C 0.32 5.77 7.49 -17.18 -0.13 5.65 16 5 C -0.11 -2.03 7.95 -38.84 -0.31 -2.34 16 6 C -0.03 -0.63 4.46 -104.65 -0.47 -1.10 16 7 C 0.56 10.48 6.61 -12.22 -0.08 10.40 16 8 O -0.54 -10.66 15.94 5.35 0.09 -10.57 16 9 N -0.59 -10.37 2.46 -176.09 -0.43 -10.80 16 10 C 0.23 4.76 4.75 -5.20 -0.02 4.73 16 11 C -0.55 -12.26 6.47 -34.45 -0.22 -12.48 16 12 H 0.07 1.50 7.26 -52.49 -0.38 1.12 16 13 C 0.08 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.88 -22.19 13.29 55.43 0.74 -21.46 16 15 Si 0.89 19.08 29.54 -169.99 -5.02 14.06 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 C 0.13 1.88 5.38 -4.05 -0.02 1.86 16 20 C -0.05 -0.57 6.03 -29.52 -0.18 -0.75 16 21 C 0.22 3.08 15.43 -20.77 -0.32 2.76 16 22 N -0.45 -7.32 18.53 42.13 0.78 -6.54 16 23 C -0.09 -1.51 6.37 -38.93 -0.25 -1.76 16 24 Cl -0.05 -0.74 27.63 -51.86 -1.43 -2.18 16 25 C 0.14 2.01 10.97 -17.57 -0.19 1.82 16 26 N -0.52 -8.51 9.18 -13.35 -0.12 -8.63 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.18 3.64 5.23 -52.49 -0.27 3.36 16 33 H 0.04 0.86 6.76 -51.93 -0.35 0.51 16 34 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 35 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 36 H 0.09 1.29 7.36 -51.93 -0.38 0.91 16 37 H 0.09 1.35 8.11 -51.92 -0.42 0.93 16 38 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -27.40 367.74 -6.48 -33.88 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.74 Total: 1.78 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -1.68 Total: 10.26 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.96 Total: -47.43 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.11 Total: -15.92 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.43 Total: -2.18 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.40 -6.48 -33.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185504626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.165 kcal (2) G-P(sol) polarization free energy of solvation -27.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds