Wall clock time and date at job start Tue Mar 31 2020 20:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42896 * 109.46764 * 2 1 4 4 C 1.35717 * 116.99549 * 179.97438 * 3 2 1 5 5 C 1.38837 * 119.59812 * 180.27862 * 4 3 2 6 6 C 1.39629 * 118.95977 * 180.27187 * 5 4 3 7 7 C 1.48089 * 120.90004 * 179.73428 * 6 5 4 8 8 O 1.21520 * 120.00066 * 235.46321 * 7 6 5 9 9 N 1.34772 * 120.00130 * 55.46564 * 7 6 5 10 10 C 1.46501 * 119.99888 * 5.28191 * 9 7 6 11 11 C 1.50692 * 109.47240 * 269.99937 * 10 9 7 12 12 H 1.08000 * 119.99950 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00256 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99813 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00247 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46876 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46897 * 120.00420 * 15 13 11 18 18 H 1.48499 * 109.47202 * 240.00218 * 15 13 11 19 19 C 1.46495 * 119.99925 * 185.28037 * 9 7 6 20 20 C 1.52998 * 109.47241 * 265.30145 * 19 9 7 21 21 C 1.47205 * 109.47055 * 180.02562 * 20 19 9 22 22 N 9.18693 * 145.67879 * 198.19541 * 4 1 2 23 23 C 1.40075 * 118.19495 * 359.46812 * 6 5 4 24 24 Cl 1.73602 * 120.44968 * 180.29209 * 23 6 5 25 25 C 1.38148 * 119.09555 * 0.26729 * 23 6 5 26 26 N 1.31877 * 120.95761 * 0.02562 * 25 23 6 27 27 H 1.08992 * 109.47082 * 299.99433 * 1 2 3 28 28 H 1.08997 * 109.47128 * 59.99972 * 1 2 3 29 29 H 1.09004 * 109.46660 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46660 * 240.00365 * 2 1 3 31 31 H 1.08997 * 109.47128 * 120.00028 * 2 1 3 32 32 H 1.07997 * 120.52673 * 0.03179 * 5 4 3 33 33 H 1.09001 * 109.47325 * 30.00038 * 10 9 7 34 34 H 1.08999 * 109.47016 * 149.99860 * 10 9 7 35 35 H 0.97001 * 120.00023 * 179.97438 * 14 13 11 36 36 H 1.08999 * 109.47135 * 25.30438 * 19 9 7 37 37 H 1.09010 * 109.47173 * 145.30233 * 19 9 7 38 38 H 1.08999 * 109.47296 * 300.00195 * 20 19 9 39 39 H 1.08995 * 109.47352 * 60.00046 * 20 19 9 40 40 H 1.07997 * 119.51990 * 180.02562 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3518 1.5251 0.0005 5 6 3.8734 2.8117 0.0064 6 6 5.2596 2.9792 0.0011 7 6 5.8622 4.3320 0.0012 8 8 6.6509 4.6459 -0.8684 9 7 5.5359 5.2150 0.9656 10 6 4.6765 4.8010 2.0775 11 6 3.2343 5.0462 1.7160 12 1 2.9829 5.4686 0.7544 13 6 2.2356 4.7313 2.6129 14 7 2.5417 4.2173 3.7841 15 14 0.4478 5.0359 2.1650 16 1 0.3715 5.6172 0.8007 17 1 -0.2965 3.7513 2.1978 18 1 -0.1528 5.9809 3.1405 19 6 6.0406 6.5888 0.9021 20 6 7.3209 6.7007 1.7322 21 6 7.8277 8.0813 1.6688 22 7 8.2199 9.1458 1.6207 23 6 6.0648 1.8330 0.0015 24 17 7.7951 1.9733 0.0027 25 6 5.4631 0.5894 0.0014 26 7 4.1497 0.4713 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 3.2174 3.6696 0.0111 33 1 4.8258 3.7397 2.2765 34 1 4.9310 5.3767 2.9673 35 1 1.8391 3.9961 4.4153 36 1 6.2555 6.8494 -0.1342 37 1 5.2889 7.2708 1.2999 38 1 7.1060 6.4401 2.7685 39 1 8.0725 6.0188 1.3345 40 1 6.0773 -0.2989 0.0021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185504626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:37 Heat of formation + Delta-G solvation = -31.180481 kcal Electronic energy + Delta-G solvation = -27057.968858 eV Core-core repulsion = 23091.894534 eV Total energy + Delta-G solvation = -3966.074324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.95391 -40.67460 -38.98213 -37.92695 -37.45849 -36.84072 -34.79391 -33.91096 -32.92577 -32.15872 -30.74118 -29.11889 -26.72373 -25.16369 -24.85007 -24.24426 -23.34489 -20.89814 -19.26160 -18.78618 -18.37279 -18.17469 -17.80656 -17.48236 -17.22439 -16.82172 -16.24872 -15.90652 -15.77706 -15.32343 -15.13293 -14.95470 -14.65592 -14.36254 -14.23069 -13.78281 -13.73275 -13.60143 -13.51532 -13.30949 -13.24565 -12.94849 -12.69355 -12.65626 -12.62600 -12.49357 -12.17283 -12.13245 -11.83104 -11.65943 -11.60839 -11.31751 -10.83290 -10.58448 -10.51579 -9.59738 -9.38556 -8.16592 -6.25404 -0.27342 0.00043 1.02021 1.42912 1.48531 1.51284 1.55033 1.69288 1.79777 2.02408 2.19759 2.45223 2.60407 3.10642 3.16504 3.22133 3.47924 3.80269 3.87946 4.10073 4.11133 4.13064 4.18725 4.46288 4.49555 4.55422 4.61118 4.76648 4.82890 4.89471 4.91754 4.95606 5.02954 5.16882 5.25765 5.28669 5.65495 5.79031 6.07946 6.20941 6.40839 6.55698 6.63763 6.81348 7.11905 7.43337 8.89206 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009125 B = 0.005475 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.779187 B = 5112.985169 C = 7600.407758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.316 6.316 4 C 0.314 3.686 5 C -0.128 4.128 6 C -0.047 4.047 7 C 0.565 3.435 8 O -0.553 6.553 9 N -0.582 5.582 10 C 0.250 3.750 11 C -0.535 4.535 12 H 0.061 0.939 13 C 0.039 3.961 14 N -0.910 5.910 15 Si 0.931 3.069 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.284 1.284 19 C 0.123 3.877 20 C -0.032 4.032 21 C 0.246 3.754 22 N -0.488 5.488 23 C -0.099 4.099 24 Cl -0.036 7.036 25 C 0.150 3.850 26 N -0.520 5.520 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.161 0.839 33 H 0.022 0.978 34 H 0.042 0.958 35 H 0.265 0.735 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.919 -9.647 -4.843 10.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.224 6.224 4 C 0.136 3.864 5 C -0.149 4.149 6 C -0.058 4.058 7 C 0.352 3.648 8 O -0.432 6.432 9 N -0.312 5.312 10 C 0.130 3.870 11 C -0.573 4.573 12 H 0.079 0.921 13 C -0.163 4.163 14 N -0.548 5.548 15 Si 0.758 3.242 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.210 1.210 19 C -0.001 4.001 20 C -0.073 4.073 21 C -0.071 4.071 22 N -0.166 5.166 23 C -0.130 4.130 24 Cl -0.007 7.007 25 C -0.007 4.007 26 N -0.244 5.244 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.178 0.822 33 H 0.040 0.960 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.354 -8.544 -5.172 10.261 hybrid contribution -0.828 0.474 0.269 0.991 sum 1.526 -8.070 -4.904 9.565 Atomic orbital electron populations 1.21858 0.91582 1.04389 1.02859 1.22870 0.96053 0.79868 1.02737 1.86305 1.16261 1.32454 1.87343 1.19742 0.84582 0.89592 0.92504 1.21711 0.94216 0.97698 1.01323 1.19948 0.92838 0.94044 0.98969 1.18020 0.80732 0.84281 0.81785 1.90738 1.35399 1.78742 1.38347 1.48026 1.48149 1.10425 1.24551 1.19219 0.87988 0.95709 0.84125 1.21577 0.91651 1.42352 1.01739 0.92063 1.25351 1.01725 0.94535 0.94703 1.69978 1.34163 1.43008 1.07690 0.85893 0.81900 0.77837 0.78549 1.19129 1.20743 1.21008 1.21305 0.94658 0.82766 1.01396 1.19701 0.98317 0.84168 1.05160 1.29137 0.91980 0.94597 0.91399 1.81192 1.11014 1.13669 1.10773 1.21884 0.86867 0.94690 1.09519 1.98363 1.07157 1.98311 1.96862 1.22755 0.88858 0.96037 0.93025 1.67326 1.06013 1.32435 1.18673 0.93013 0.91465 0.87373 0.90494 0.91817 0.82178 0.96046 0.93980 0.92607 0.89650 0.88750 0.85225 0.86076 0.77740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 10.28 71.98 0.74 -2.40 16 2 C 0.06 1.54 6.03 71.98 0.43 1.98 16 3 O -0.32 -11.03 10.11 -90.39 -0.91 -11.94 16 4 C 0.31 11.19 7.49 84.78 0.63 11.82 16 5 C -0.13 -4.87 7.95 22.75 0.18 -4.69 16 6 C -0.05 -1.69 4.46 -19.88 -0.09 -1.78 16 7 C 0.56 20.63 6.61 86.86 0.57 21.20 16 8 O -0.55 -21.27 15.94 -3.78 -0.06 -21.33 16 9 N -0.58 -20.26 2.46 -829.32 -2.04 -22.30 16 10 C 0.25 10.17 4.75 85.63 0.41 10.57 16 11 C -0.53 -24.17 6.47 25.60 0.17 -24.00 16 12 H 0.06 2.80 7.26 -2.91 -0.02 2.78 16 13 C 0.04 1.85 5.46 84.65 0.46 2.31 16 14 N -0.91 -46.23 13.29 21.45 0.28 -45.95 16 15 Si 0.93 39.34 29.54 68.60 2.03 41.37 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 19 C 0.12 3.51 5.38 86.38 0.46 3.98 16 20 C -0.03 -0.75 6.03 28.79 0.17 -0.57 16 21 C 0.25 6.50 15.43 89.45 1.38 7.88 16 22 N -0.49 -15.47 18.53 20.00 0.37 -15.10 16 23 C -0.10 -3.08 6.37 22.69 0.14 -2.93 16 24 Cl -0.04 -0.99 27.63 -2.72 -0.08 -1.06 16 25 C 0.15 4.08 10.97 84.66 0.93 5.01 16 26 N -0.52 -16.15 9.18 -309.03 -2.84 -18.98 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.11 1.55 8.14 -2.39 -0.02 1.54 16 30 H 0.08 1.77 8.10 -2.39 -0.02 1.75 16 31 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 32 H 0.16 6.66 5.23 -2.91 -0.02 6.64 16 33 H 0.02 0.96 6.76 -2.39 -0.02 0.95 16 34 H 0.04 1.74 8.07 -2.39 -0.02 1.72 16 35 H 0.26 13.04 8.31 -92.71 -0.77 12.27 16 36 H 0.09 2.48 7.36 -2.39 -0.02 2.46 16 37 H 0.09 2.67 8.11 -2.38 -0.02 2.65 16 38 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.21 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -58.23 367.74 4.44 -53.79 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 1.08 Total: 13.14 kcal Atomic # 6 Polarization: 21.77 SS G_CDS: 6.60 Total: 28.37 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -4.22 Total: -102.33 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.97 Total: -33.28 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.06 kcal Total: -58.23 4.44 -53.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185504626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.611 kcal (2) G-P(sol) polarization free energy of solvation -58.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds