Wall clock time and date at job start Tue Mar 31 2020 19:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46951 * 2 1 4 4 H 1.08999 * 109.47503 * 305.18729 * 3 2 1 5 5 C 1.50701 * 109.47272 * 185.18331 * 3 2 1 6 6 H 1.07994 * 120.00300 * 240.00121 * 5 3 2 7 7 C 1.37878 * 119.99461 * 60.00460 * 5 3 2 8 8 N 1.31508 * 120.00424 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99690 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46946 * 90.00084 * 9 7 5 11 11 H 1.48503 * 109.46895 * 209.99887 * 9 7 5 12 12 H 1.48500 * 109.47170 * 329.99922 * 9 7 5 13 13 N 1.46507 * 109.47059 * 65.18889 * 3 2 1 14 14 S 1.65594 * 120.00193 * 215.40503 * 13 3 2 15 15 O 1.42108 * 106.39884 * 309.84442 * 14 13 3 16 16 O 1.42093 * 106.40622 * 176.92715 * 14 13 3 17 17 C 1.76199 * 107.22050 * 63.38447 * 14 13 3 18 18 C 1.38306 * 119.88310 * 84.41118 * 17 14 13 19 19 C 1.38027 * 120.11839 * 180.25757 * 18 17 14 20 20 C 1.39304 * 119.88124 * 359.51339 * 19 18 17 21 21 C 1.48457 * 120.11508 * 180.23700 * 20 19 18 22 22 N 1.34048 * 126.67383 * 180.25783 * 21 20 19 23 23 N 1.28986 * 107.27176 * 179.97438 * 22 21 20 24 24 N 1.28728 * 108.94240 * 359.97438 * 23 22 21 25 25 H 0.97003 * 125.33713 * 179.97438 * 24 23 22 26 26 N 1.28874 * 109.31872 * 359.73083 * 24 23 22 27 27 C 1.39296 * 119.76340 * 0.46212 * 20 19 18 28 28 C 1.38029 * 119.88290 * 359.77076 * 27 20 19 29 29 H 1.09002 * 109.46759 * 304.39346 * 1 2 3 30 30 H 1.08992 * 109.47064 * 64.39810 * 1 2 3 31 31 H 1.09000 * 109.46715 * 184.39803 * 1 2 3 32 32 H 1.09005 * 109.47138 * 240.00614 * 2 1 3 33 33 H 1.08990 * 109.47711 * 120.00298 * 2 1 3 34 34 H 0.96995 * 120.00362 * 179.97438 * 8 7 5 35 35 H 0.96995 * 119.99728 * 35.39632 * 13 3 2 36 36 H 1.08005 * 119.94042 * 359.97438 * 18 17 14 37 37 H 1.08004 * 120.06022 * 179.74786 * 19 18 17 38 38 H 1.08000 * 120.05693 * 179.78925 * 27 20 19 39 39 H 1.07992 * 119.94221 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9825 -0.8399 5 6 3.5415 1.4445 -0.1284 6 1 4.1492 1.8883 0.6464 7 6 4.1395 0.8799 -1.2350 8 7 3.3996 0.3392 -2.1782 9 14 6.0007 0.8830 -1.3945 10 1 6.5526 -0.3492 -0.7760 11 1 6.3743 0.9258 -2.8312 12 1 6.5548 2.0748 -0.7033 13 7 1.6563 2.0961 1.2538 14 16 1.2498 3.7014 1.2601 15 8 2.2924 4.3819 0.5750 16 8 0.8627 4.0121 2.5915 17 6 -0.1955 3.8775 0.2678 18 6 -1.4430 3.6548 0.8218 19 6 -2.5781 3.7862 0.0475 20 6 -2.4661 4.1537 -1.2915 21 6 -3.6839 4.3016 -2.1277 22 7 -3.7289 4.6424 -3.4233 23 7 -4.9706 4.6591 -3.7720 24 7 -5.6945 4.3446 -2.7551 25 1 -6.6627 4.2851 -2.7524 26 7 -4.9308 4.1164 -1.7424 27 6 -1.2072 4.3772 -1.8443 28 6 -0.0783 4.2383 -1.0624 29 1 -0.3633 0.5805 0.8480 30 1 -0.3633 0.4440 -0.9267 31 1 -0.3633 -1.0247 0.0788 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8898 34 1 3.8203 -0.0577 -2.9569 35 1 1.6402 1.5885 2.0802 36 1 -1.5289 3.3732 1.8609 37 1 -3.5516 3.6081 0.4800 38 1 -1.1147 4.6589 -2.8828 39 1 0.8982 4.4110 -1.4900 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185623877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:57 Heat of formation + Delta-G solvation = 72.747725 kcal Electronic energy + Delta-G solvation = -26866.271292 eV Core-core repulsion = 22939.040090 eV Total energy + Delta-G solvation = -3927.231201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.72505 -39.20874 -36.66625 -35.94617 -35.22288 -34.68583 -33.87379 -32.17340 -31.11789 -30.81002 -30.63156 -26.62536 -25.16599 -24.84989 -23.06159 -22.57552 -21.97116 -20.20530 -19.49742 -19.04235 -17.70601 -17.40611 -16.97705 -16.60866 -16.09237 -15.63782 -15.03866 -14.58876 -14.43205 -14.12054 -13.72202 -13.49975 -13.33878 -13.06884 -13.03094 -12.88147 -12.38548 -11.90696 -11.65874 -11.65118 -11.56870 -11.48564 -11.36840 -11.27612 -11.19538 -11.11554 -10.93955 -10.76415 -10.56471 -10.19782 -9.85086 -9.81391 -9.70117 -9.07913 -9.03794 -8.42368 -8.25356 -6.06250 -4.12751 0.26745 0.88273 1.05798 1.32172 1.95162 2.02803 3.31837 3.38965 3.39443 3.44852 3.48577 3.82758 3.92581 4.31674 4.44793 4.67544 4.86765 4.97440 5.07093 5.20206 5.23872 5.32651 5.56498 5.60525 5.95473 6.02198 6.08269 6.11179 6.14801 6.17113 6.26714 6.29548 6.48174 6.75464 6.77056 6.92503 7.09012 7.56200 7.64080 7.86775 7.88416 8.08453 8.24431 8.90831 9.53622 10.98025 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.003593 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.381248 B = 7790.123667 C = 8573.019084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.280 3.720 4 H 0.043 0.957 5 C -0.520 4.520 6 H 0.065 0.935 7 C 0.064 3.936 8 N -0.892 5.892 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.271 1.271 13 N -1.099 6.099 14 S 2.687 3.313 15 O -0.944 6.944 16 O -0.983 6.983 17 C -0.650 4.650 18 C -0.023 4.023 19 C -0.106 4.106 20 C 0.024 3.976 21 C 0.218 3.782 22 N -0.261 5.261 23 N -0.049 5.049 24 N -0.228 5.228 25 H 0.476 0.524 26 N -0.289 5.289 27 C -0.097 4.097 28 C -0.013 4.013 29 H 0.038 0.962 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.106 0.894 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.407 0.593 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.196 4.806 1.370 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.176 3.824 4 H 0.061 0.939 5 C -0.560 4.560 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.531 5.531 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.860 5.860 14 S 2.774 3.226 15 O -0.933 6.933 16 O -0.973 6.973 17 C -0.735 4.735 18 C -0.042 4.042 19 C -0.127 4.127 20 C 0.021 3.979 21 C -0.062 4.062 22 N -0.134 5.134 23 N -0.044 5.044 24 N -0.074 5.074 25 H 0.330 0.670 26 N -0.141 5.141 27 C -0.118 4.118 28 C -0.032 4.032 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.124 0.876 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.240 0.760 36 H 0.161 0.839 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.105 5.631 0.840 18.027 hybrid contribution -0.195 -0.740 -0.003 0.765 sum -17.300 4.891 0.837 17.997 Atomic orbital electron populations 1.21842 0.99052 0.99445 1.00256 1.21883 0.91903 0.99457 1.03392 1.18579 0.94889 0.90229 0.78691 0.93933 1.21528 0.91238 1.37413 1.05797 0.91687 1.24887 0.98464 0.94975 0.95469 1.69829 1.35041 1.38700 1.09566 0.86525 0.85368 0.78492 0.77272 1.20755 1.21187 1.19612 1.55521 1.82869 1.29408 1.18216 1.02089 0.73769 0.73742 0.72985 1.93614 1.51983 1.72520 1.75233 1.93524 1.84299 1.83877 1.35613 1.31525 1.19056 1.12948 1.09937 1.20786 0.90449 0.93177 0.99768 1.21175 0.99569 0.99712 0.92232 1.17459 0.87836 1.00648 0.91956 1.23742 0.91493 1.00621 0.90368 1.76132 1.08970 1.17329 1.10952 1.78937 0.97394 1.14147 1.13918 1.47744 1.12850 1.42913 1.03869 0.67010 1.74934 1.02557 1.21514 1.15084 1.21301 0.90509 0.99006 1.00943 1.21054 1.00002 0.90919 0.91197 0.94264 0.93770 0.94583 0.87563 0.94007 0.92709 0.75981 0.83855 0.84421 0.83826 0.82762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.85 37.16 0.37 -2.24 16 2 C -0.13 -2.66 5.38 -26.73 -0.14 -2.80 16 3 C 0.28 6.26 2.16 -69.08 -0.15 6.11 16 4 H 0.04 1.00 7.43 -51.93 -0.39 0.62 16 5 C -0.52 -13.47 8.84 -34.44 -0.30 -13.78 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -23.74 11.29 55.43 0.63 -23.12 16 9 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 N -1.10 -20.65 4.84 -5.88 -0.03 -20.68 16 14 S 2.69 49.32 5.64 -107.50 -0.61 48.71 16 15 O -0.94 -20.63 16.94 -57.17 -0.97 -21.60 16 16 O -0.98 -18.58 17.42 -57.17 -1.00 -19.58 16 17 C -0.65 -10.33 5.70 -39.53 -0.23 -10.56 16 18 C -0.02 -0.31 9.50 -39.63 -0.38 -0.69 16 19 C -0.11 -1.32 9.70 -39.26 -0.38 -1.70 16 20 C 0.02 0.33 5.88 -104.90 -0.62 -0.29 16 21 C 0.22 2.76 7.94 -156.30 -1.24 1.52 16 22 N -0.26 -3.43 12.23 32.15 0.39 -3.03 16 23 N -0.05 -0.52 13.47 60.35 0.81 0.29 16 24 N -0.23 -1.77 7.90 60.35 0.48 -1.30 16 25 H 0.48 1.24 8.96 -340.37 -3.05 -1.81 16 26 N -0.29 -3.04 12.08 32.17 0.39 -2.65 16 27 C -0.10 -1.36 9.70 -39.26 -0.38 -1.74 16 28 C -0.01 -0.20 9.17 -39.63 -0.36 -0.56 16 29 H 0.04 0.61 7.64 -51.93 -0.40 0.21 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.11 2.54 5.95 -51.93 -0.31 2.23 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 35 H 0.41 6.68 8.84 -34.46 -0.30 6.37 16 36 H 0.14 1.68 7.74 -52.48 -0.41 1.27 16 37 H 0.14 1.39 7.88 -52.48 -0.41 0.98 16 38 H 0.14 1.82 7.89 -52.49 -0.41 1.41 16 39 H 0.15 2.46 7.49 -52.49 -0.39 2.07 16 LS Contribution 352.16 15.07 5.31 5.31 Total: -1.00 -32.82 352.16 -10.41 -43.24 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.89 Total: 3.71 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -3.91 Total: -25.14 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 2.67 Total: -50.49 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -1.96 Total: -41.18 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 49.32 SS G_CDS: -0.61 Total: 48.71 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.82 -10.41 -43.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185623877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.984 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds