Wall clock time and date at job start Tue Mar 31 2020 19:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46951 * 2 1 4 4 H 1.08999 * 109.47503 * 305.18729 * 3 2 1 5 5 C 1.50701 * 109.47272 * 185.18331 * 3 2 1 6 6 H 1.07994 * 120.00300 * 240.00121 * 5 3 2 7 7 C 1.37878 * 119.99461 * 60.00460 * 5 3 2 8 8 N 1.31508 * 120.00424 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99690 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46946 * 90.00084 * 9 7 5 11 11 H 1.48503 * 109.46895 * 209.99887 * 9 7 5 12 12 H 1.48500 * 109.47170 * 329.99922 * 9 7 5 13 13 N 1.46507 * 109.47059 * 65.18889 * 3 2 1 14 14 S 1.65594 * 120.00193 * 215.40503 * 13 3 2 15 15 O 1.42108 * 106.39884 * 309.84442 * 14 13 3 16 16 O 1.42093 * 106.40622 * 176.92715 * 14 13 3 17 17 C 1.76199 * 107.22050 * 63.38447 * 14 13 3 18 18 C 1.38306 * 119.88310 * 84.41118 * 17 14 13 19 19 C 1.38027 * 120.11839 * 180.25757 * 18 17 14 20 20 C 1.39304 * 119.88124 * 359.51339 * 19 18 17 21 21 C 1.48457 * 120.11508 * 180.23700 * 20 19 18 22 22 N 1.34048 * 126.67383 * 180.25783 * 21 20 19 23 23 N 1.28986 * 107.27176 * 179.97438 * 22 21 20 24 24 N 1.28728 * 108.94240 * 359.97438 * 23 22 21 25 25 H 0.97003 * 125.33713 * 179.97438 * 24 23 22 26 26 N 1.28874 * 109.31872 * 359.73083 * 24 23 22 27 27 C 1.39296 * 119.76340 * 0.46212 * 20 19 18 28 28 C 1.38029 * 119.88290 * 359.77076 * 27 20 19 29 29 H 1.09002 * 109.46759 * 304.39346 * 1 2 3 30 30 H 1.08992 * 109.47064 * 64.39810 * 1 2 3 31 31 H 1.09000 * 109.46715 * 184.39803 * 1 2 3 32 32 H 1.09005 * 109.47138 * 240.00614 * 2 1 3 33 33 H 1.08990 * 109.47711 * 120.00298 * 2 1 3 34 34 H 0.96995 * 120.00362 * 179.97438 * 8 7 5 35 35 H 0.96995 * 119.99728 * 35.39632 * 13 3 2 36 36 H 1.08005 * 119.94042 * 359.97438 * 18 17 14 37 37 H 1.08004 * 120.06022 * 179.74786 * 19 18 17 38 38 H 1.08000 * 120.05693 * 179.78925 * 27 20 19 39 39 H 1.07992 * 119.94221 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9825 -0.8399 5 6 3.5415 1.4445 -0.1284 6 1 4.1492 1.8883 0.6464 7 6 4.1395 0.8799 -1.2350 8 7 3.3996 0.3392 -2.1782 9 14 6.0007 0.8830 -1.3945 10 1 6.5526 -0.3492 -0.7760 11 1 6.3743 0.9258 -2.8312 12 1 6.5548 2.0748 -0.7033 13 7 1.6563 2.0961 1.2538 14 16 1.2498 3.7014 1.2601 15 8 2.2924 4.3819 0.5750 16 8 0.8627 4.0121 2.5915 17 6 -0.1955 3.8775 0.2678 18 6 -1.4430 3.6548 0.8218 19 6 -2.5781 3.7862 0.0475 20 6 -2.4661 4.1537 -1.2915 21 6 -3.6839 4.3016 -2.1277 22 7 -3.7289 4.6424 -3.4233 23 7 -4.9706 4.6591 -3.7720 24 7 -5.6945 4.3446 -2.7551 25 1 -6.6627 4.2851 -2.7524 26 7 -4.9308 4.1164 -1.7424 27 6 -1.2072 4.3772 -1.8443 28 6 -0.0783 4.2383 -1.0624 29 1 -0.3633 0.5805 0.8480 30 1 -0.3633 0.4440 -0.9267 31 1 -0.3633 -1.0247 0.0788 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8898 34 1 3.8203 -0.0577 -2.9569 35 1 1.6402 1.5885 2.0802 36 1 -1.5289 3.3732 1.8609 37 1 -3.5516 3.6081 0.4800 38 1 -1.1147 4.6589 -2.8828 39 1 0.8982 4.4110 -1.4900 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185623877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:56 Heat of formation + Delta-G solvation = 48.298521 kcal Electronic energy + Delta-G solvation = -26867.331489 eV Core-core repulsion = 22939.040090 eV Total energy + Delta-G solvation = -3928.291398 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.56541 -40.29829 -38.23076 -37.63100 -36.79540 -35.55893 -34.79288 -34.09477 -32.20209 -32.18541 -31.83883 -28.47201 -26.11806 -25.78229 -24.81750 -23.63664 -22.99564 -21.87653 -20.48064 -20.29095 -19.03674 -18.66991 -18.23141 -18.09757 -17.43338 -17.14295 -16.57539 -15.96470 -15.64545 -15.36836 -15.05606 -14.84000 -14.66813 -14.56516 -14.25405 -14.05994 -13.53816 -13.34776 -13.29777 -13.08869 -12.98627 -12.97359 -12.67475 -12.54909 -12.52049 -12.49405 -12.21261 -12.12804 -12.06353 -11.92650 -11.56543 -11.50814 -11.35600 -10.40079 -10.15806 -10.11881 -9.95915 -8.05265 -6.17136 -0.81317 -0.39520 0.05537 0.24137 1.02602 1.33556 1.44504 1.47764 1.57374 2.20643 2.46836 2.49332 2.54390 2.90510 3.02338 3.21623 3.45067 3.84866 3.89292 4.00734 4.23037 4.30569 4.41672 4.52829 4.53776 4.66339 4.75122 4.90017 4.93254 4.99268 5.04313 5.18084 5.20071 5.41279 5.45624 5.55386 5.66543 5.73811 5.86294 6.07924 6.33954 6.51885 6.89683 7.01549 7.51114 8.96578 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.003593 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.381248 B = 7790.123667 C = 8573.019084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.286 3.714 4 H 0.028 0.972 5 C -0.539 4.539 6 H 0.051 0.949 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.943 3.057 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.279 1.279 13 N -1.097 6.097 14 S 2.700 3.300 15 O -0.988 6.988 16 O -0.988 6.988 17 C -0.658 4.658 18 C -0.021 4.021 19 C -0.095 4.095 20 C 0.029 3.971 21 C 0.201 3.799 22 N -0.289 5.289 23 N -0.053 5.053 24 N -0.195 5.195 25 H 0.497 0.503 26 N -0.279 5.279 27 C -0.101 4.101 28 C -0.029 4.029 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.417 0.583 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.151 0.849 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.901 4.444 2.019 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C 0.181 3.819 4 H 0.045 0.955 5 C -0.579 4.579 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.548 5.548 9 Si 0.769 3.231 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.204 1.204 13 N -0.858 5.858 14 S 2.792 3.208 15 O -0.978 6.978 16 O -0.978 6.978 17 C -0.747 4.747 18 C -0.040 4.040 19 C -0.116 4.116 20 C 0.025 3.975 21 C -0.079 4.079 22 N -0.161 5.161 23 N -0.048 5.048 24 N -0.046 5.046 25 H 0.357 0.643 26 N -0.132 5.132 27 C -0.122 4.122 28 C -0.048 4.048 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.253 0.747 36 H 0.184 0.816 37 H 0.186 0.814 38 H 0.168 0.832 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.794 5.257 1.520 20.536 hybrid contribution 0.448 -0.574 -0.226 0.763 sum -19.345 4.683 1.293 19.946 Atomic orbital electron populations 1.21742 0.96146 1.01036 1.00817 1.21710 0.94507 0.97857 1.02093 1.18293 0.92883 0.91194 0.79525 0.95455 1.21856 0.93383 1.37133 1.05528 0.93108 1.25474 1.01622 0.95049 0.95494 1.69927 1.36016 1.39130 1.09751 0.85795 0.81768 0.78324 0.77202 1.19797 1.20816 1.20376 1.55270 1.83398 1.29424 1.17698 1.01327 0.73846 0.72969 0.72697 1.93557 1.54793 1.73445 1.76023 1.93507 1.84464 1.83768 1.36099 1.30995 1.18557 1.15498 1.09626 1.21099 0.89647 0.92276 1.00942 1.21467 1.00416 0.98143 0.91553 1.17603 0.87839 0.99477 0.92554 1.23612 0.91883 1.01990 0.90384 1.76124 1.10130 1.18363 1.11461 1.78894 0.97009 1.14498 1.14384 1.47823 1.13781 1.40383 1.02633 0.64342 1.74885 1.01912 1.20908 1.15483 1.21343 0.90507 0.99139 1.01187 1.20987 1.00083 0.92188 0.91588 0.92095 0.94536 0.92700 0.90578 0.93556 0.92737 0.74713 0.81565 0.81365 0.83161 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 9.85 71.98 0.71 -3.96 16 2 C -0.12 -5.09 5.38 30.60 0.16 -4.92 16 3 C 0.29 12.98 2.16 44.24 0.10 13.08 16 4 H 0.03 1.34 7.43 -2.39 -0.02 1.32 16 5 C -0.54 -28.61 8.84 25.60 0.23 -28.38 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 7 C 0.02 1.26 5.29 84.66 0.45 1.71 16 8 N -0.91 -49.25 11.29 21.45 0.24 -49.01 16 9 Si 0.94 43.36 29.54 68.60 2.03 45.38 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 N -1.10 -41.21 4.84 -172.51 -0.83 -42.05 16 14 S 2.70 99.83 5.64 -56.49 -0.32 99.51 16 15 O -0.99 -44.92 16.94 -128.00 -2.17 -47.09 16 16 O -0.99 -36.60 17.42 -128.00 -2.23 -38.83 16 17 C -0.66 -20.60 5.70 22.31 0.13 -20.47 16 18 C -0.02 -0.51 9.50 22.24 0.21 -0.30 16 19 C -0.10 -2.07 9.70 22.48 0.22 -1.86 16 20 C 0.03 0.71 5.88 -20.04 -0.12 0.59 16 21 C 0.20 4.66 7.94 137.38 1.09 5.75 16 22 N -0.29 -7.13 12.23 -52.18 -0.64 -7.77 16 23 N -0.05 -1.02 13.47 37.02 0.50 -0.52 16 24 N -0.19 -2.42 7.90 37.02 0.29 -2.13 16 25 H 0.50 0.81 8.96 -347.54 -3.12 -2.30 16 26 N -0.28 -4.96 12.08 -52.13 -0.63 -5.59 16 27 C -0.10 -2.80 9.70 22.47 0.22 -2.58 16 28 C -0.03 -0.93 9.17 22.24 0.20 -0.72 16 29 H 0.06 1.75 7.64 -2.39 -0.02 1.73 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 3.68 5.95 -2.38 -0.01 3.67 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 35 H 0.42 13.45 8.84 -96.75 -0.86 12.59 16 36 H 0.17 3.32 7.74 -2.91 -0.02 3.30 16 37 H 0.17 2.64 7.88 -2.91 -0.02 2.62 16 38 H 0.15 3.85 7.89 -2.91 -0.02 3.83 16 39 H 0.14 4.76 7.49 -2.91 -0.02 4.74 16 Total: -1.00 -71.05 352.16 -3.01 -74.06 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -2.84 Total: 16.10 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 3.59 Total: -42.07 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -1.07 Total: -107.06 kcal Atomic # 8 Polarization: -81.52 SS G_CDS: -4.40 Total: -85.92 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 99.83 SS G_CDS: -0.32 Total: 99.51 kcal Total: -71.05 -3.01 -74.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185623877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.354 kcal (2) G-P(sol) polarization free energy of solvation -71.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds