Wall clock time and date at job start Tue Mar 31 2020 19:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00019 * 2 1 4 4 H 1.48504 * 109.46980 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47050 * 299.99806 * 3 2 1 6 6 H 1.48495 * 109.47634 * 59.99964 * 3 2 1 7 7 C 1.37879 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99710 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00289 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47171 * 180.02562 * 9 7 2 11 11 S 1.81406 * 109.46937 * 180.02562 * 10 9 7 12 12 O 1.42095 * 110.54513 * 68.37365 * 11 10 9 13 13 O 1.42102 * 110.54191 * 291.62209 * 11 10 9 14 14 N 1.65608 * 104.44741 * 179.97438 * 11 10 9 15 15 C 1.46501 * 120.00079 * 65.00031 * 14 11 10 16 16 C 1.50695 * 109.47096 * 164.99965 * 15 14 11 17 17 N 1.30654 * 125.85122 * 275.02255 * 16 15 14 18 18 C 1.33988 * 109.78699 * 180.02562 * 17 16 15 19 19 C 1.48382 * 125.65117 * 179.97438 * 18 17 16 20 20 C 1.39765 * 120.90139 * 359.71997 * 19 18 17 21 21 C 1.37982 * 119.01880 * 179.77480 * 20 19 18 22 22 N 1.31929 * 120.87780 * 0.50947 * 21 20 19 23 23 C 1.31929 * 122.00652 * 359.73926 * 22 21 20 24 24 C 1.37976 * 120.87778 * 0.02562 * 23 22 21 25 25 N 1.31506 * 108.69765 * 359.97438 * 18 17 16 26 26 N 1.34555 * 125.85330 * 94.71571 * 16 15 14 27 27 H 0.96997 * 126.74395 * 359.97438 * 26 16 15 28 28 H 0.96998 * 119.99506 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.46608 * 59.99842 * 9 7 2 30 30 H 1.09000 * 109.47066 * 300.00382 * 9 7 2 31 31 H 1.09000 * 109.47698 * 60.00057 * 10 9 7 32 32 H 1.09000 * 109.47377 * 300.00116 * 10 9 7 33 33 H 0.97002 * 119.99894 * 244.99520 * 14 11 10 34 34 H 1.09002 * 109.46709 * 284.99775 * 15 14 11 35 35 H 1.09001 * 109.47081 * 44.99820 * 15 14 11 36 36 H 1.07995 * 120.49168 * 359.97438 * 20 19 18 37 37 H 1.07995 * 119.55958 * 180.27185 * 21 20 19 38 38 H 1.07998 * 119.55717 * 180.02562 * 23 22 21 39 39 H 1.08003 * 120.48598 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6620 0.0027 11 16 1.3382 -5.2330 0.0034 12 8 0.6646 -5.4204 -1.2336 13 8 0.6638 -5.4189 1.2403 14 7 2.5204 -6.3927 0.0038 15 6 3.4189 -6.5225 1.1536 16 6 4.1389 -7.8444 1.0819 17 7 3.6847 -8.9879 1.5212 18 6 4.5871 -9.9519 1.2938 19 6 4.4323 -11.3835 1.6521 20 6 3.2761 -11.8431 2.2888 21 6 3.1711 -13.1832 2.6000 22 7 4.1471 -14.0234 2.3135 23 6 5.2564 -13.6295 1.7178 24 6 5.4413 -12.3078 1.3677 25 7 5.6328 -9.4190 0.7005 26 7 5.3572 -8.0503 0.5491 27 1 5.9328 -7.3840 0.1423 28 1 -0.4849 0.8401 -0.0004 29 1 0.6240 -2.5574 -0.8881 30 1 0.6247 -2.5563 0.8919 31 1 2.8719 -3.6036 0.8926 32 1 2.8719 -3.6051 -0.8873 33 1 2.6179 -6.9861 -0.7573 34 1 4.1466 -5.7111 1.1394 35 1 2.8388 -6.4742 2.0752 36 1 2.4754 -11.1600 2.5307 37 1 2.2796 -13.5486 3.0880 38 1 6.0301 -14.3513 1.5014 39 1 6.3518 -11.9924 0.8798 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191438604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:27 Heat of formation + Delta-G solvation = 15.195767 kcal Electronic energy + Delta-G solvation = -25064.405856 eV Core-core repulsion = 21134.679014 eV Total energy + Delta-G solvation = -3929.726842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.40865 -40.92893 -38.17292 -37.04556 -36.73032 -35.84869 -34.83058 -33.26530 -33.07946 -32.24175 -31.77001 -27.66738 -27.55401 -25.76851 -24.40158 -23.57584 -22.55167 -21.88213 -20.39971 -19.50076 -19.06921 -18.27260 -17.84106 -17.70308 -17.03271 -16.89435 -16.69452 -16.60258 -16.49644 -16.03101 -15.24671 -14.98332 -14.94607 -14.78348 -14.58236 -14.45099 -14.40234 -13.68650 -13.45867 -13.17073 -13.08155 -12.97573 -12.92868 -12.73304 -12.68118 -12.19557 -12.07838 -12.06269 -11.70159 -11.37165 -11.21911 -11.18636 -10.62396 -10.58178 -10.53304 -10.22756 -10.15933 -8.23001 -6.36006 -0.75019 -0.39784 0.15499 0.48162 1.38127 1.43596 1.44067 1.56503 1.63907 1.99306 2.40197 2.47706 2.85292 2.88310 3.11477 3.18216 3.28135 3.44481 3.56184 3.96794 4.00685 4.01412 4.14096 4.17878 4.28188 4.36755 4.58601 4.60511 4.63316 4.84149 4.86824 4.90744 5.12873 5.21383 5.33823 5.35521 5.65978 5.72936 5.88613 5.94808 6.09912 6.76123 6.79221 6.94911 7.34302 8.89251 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.028276 B = 0.002019 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.009987 B =13863.967599 C =14431.084964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.006 4.006 3 Si 0.971 3.029 4 H -0.253 1.253 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.081 0.919 9 C 0.015 3.985 10 C -0.582 4.582 11 S 2.624 3.376 12 O -0.998 6.998 13 O -0.992 6.992 14 N -1.107 6.107 15 C 0.187 3.813 16 C 0.289 3.711 17 N -0.537 5.537 18 C 0.246 3.754 19 C 0.012 3.988 20 C -0.137 4.137 21 C 0.096 3.904 22 N -0.499 5.499 23 C 0.097 3.903 24 C -0.139 4.139 25 N -0.298 5.298 26 N -0.449 5.449 27 H 0.463 0.537 28 H 0.265 0.735 29 H 0.005 0.995 30 H 0.009 0.991 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.424 0.576 34 H 0.143 0.857 35 H 0.118 0.882 36 H 0.148 0.852 37 H 0.185 0.815 38 H 0.190 0.810 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.726 -21.519 2.880 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.176 1.176 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.099 0.901 9 C -0.023 4.023 10 C -0.715 4.715 11 S 2.721 3.279 12 O -0.988 6.988 13 O -0.981 6.981 14 N -0.868 5.868 15 C 0.059 3.941 16 C 0.008 3.992 17 N -0.266 5.266 18 C -0.033 4.033 19 C 0.002 3.998 20 C -0.159 4.159 21 C -0.060 4.060 22 N -0.209 5.209 23 C -0.059 4.059 24 C -0.161 4.161 25 N -0.129 5.129 26 N -0.171 5.171 27 H 0.314 0.686 28 H 0.074 0.926 29 H 0.023 0.977 30 H 0.027 0.973 31 H 0.173 0.827 32 H 0.168 0.832 33 H 0.260 0.740 34 H 0.161 0.839 35 H 0.136 0.864 36 H 0.165 0.835 37 H 0.202 0.798 38 H 0.207 0.793 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 14.836 -22.826 3.219 27.414 hybrid contribution 0.754 2.585 -0.911 2.843 sum 15.590 -20.241 2.309 25.653 Atomic orbital electron populations 1.70110 1.08072 1.28098 1.51216 1.26102 0.95796 1.03852 0.94705 0.85302 0.79366 0.78305 0.77481 1.17605 1.20884 1.20738 1.21579 0.94166 0.90610 1.50844 0.90093 1.18857 0.93819 0.93145 0.96528 1.30313 1.12710 1.15180 1.13313 1.04503 0.74359 0.76404 0.72664 1.93520 1.72618 1.85881 1.46773 1.93524 1.72307 1.85396 1.46888 1.55360 1.52472 1.51575 1.27440 1.20141 0.93534 0.89425 0.91018 1.24248 0.85381 0.96352 0.93179 1.70473 1.31445 0.98344 1.26293 1.22379 0.88518 0.94845 0.97582 1.17996 0.96146 0.86943 0.98748 1.22364 0.97766 0.98005 0.97771 1.23135 0.97956 0.88801 0.96063 1.67719 1.01914 1.39611 1.11612 1.23190 0.95217 0.94240 0.93253 1.22357 0.99554 0.93950 1.00250 1.78148 1.22279 0.89201 1.23244 1.47986 1.15730 1.07700 1.45669 0.68579 0.92579 0.97679 0.97266 0.82681 0.83202 0.74039 0.83918 0.86441 0.83467 0.79806 0.79348 0.82849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.09 13.29 21.45 0.28 -54.81 16 2 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 3 Si 0.97 41.37 29.54 68.60 2.03 43.40 16 4 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 6 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.53 -27.40 9.11 25.60 0.23 -27.16 16 8 H 0.08 3.75 7.74 -2.91 -0.02 3.72 16 9 C 0.02 0.74 4.98 29.84 0.15 0.89 16 10 C -0.58 -17.94 6.01 71.98 0.43 -17.51 16 11 S 2.62 79.73 5.46 -56.49 -0.31 79.42 16 12 O -1.00 -38.19 18.08 -127.65 -2.31 -40.49 16 13 O -0.99 -37.03 17.50 -127.65 -2.23 -39.27 16 14 N -1.11 -21.29 5.88 -190.79 -1.12 -22.41 16 15 C 0.19 2.70 6.75 85.63 0.58 3.28 16 16 C 0.29 4.97 7.62 138.24 1.05 6.02 16 17 N -0.54 -12.28 10.92 -181.00 -1.98 -14.25 16 18 C 0.25 5.40 7.80 137.45 1.07 6.48 16 19 C 0.01 0.24 5.91 -19.84 -0.12 0.12 16 20 C -0.14 -2.48 9.78 22.58 0.22 -2.26 16 21 C 0.10 1.53 11.17 84.62 0.95 2.48 16 22 N -0.50 -8.77 10.35 -196.12 -2.03 -10.79 16 23 C 0.10 1.37 11.17 84.62 0.95 2.32 16 24 C -0.14 -2.16 9.78 22.58 0.22 -1.94 16 25 N -0.30 -5.79 12.52 -52.36 -0.66 -6.45 16 26 N -0.45 -6.16 7.44 -50.74 -0.38 -6.53 16 27 H 0.46 2.68 8.96 -213.11 -1.91 0.77 16 28 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 30 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.16 3.66 8.14 -2.39 -0.02 3.64 16 32 H 0.15 3.81 8.14 -2.39 -0.02 3.79 16 33 H 0.42 7.24 8.61 -96.74 -0.83 6.41 16 34 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.12 1.91 7.70 -2.39 -0.02 1.89 16 36 H 0.15 2.64 7.93 -2.91 -0.02 2.61 16 37 H 0.19 1.88 8.06 -2.91 -0.02 1.85 16 38 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.15 1.94 7.92 -2.91 -0.02 1.92 16 Total: -1.00 -83.51 361.83 -4.13 -87.64 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -1.62 Total: 11.72 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 6.20 Total: -27.16 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -5.88 Total: -115.25 kcal Atomic # 8 Polarization: -75.22 SS G_CDS: -4.54 Total: -79.76 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: 79.73 SS G_CDS: -0.31 Total: 79.42 kcal Total: -83.51 -4.13 -87.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191438604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.832 kcal (2) G-P(sol) polarization free energy of solvation -83.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds