Wall clock time and date at job start Tue Mar 31 2020 19:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00384 * 2 1 4 4 H 1.48494 * 109.46964 * 239.99741 * 3 2 1 5 5 H 1.48496 * 109.46892 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47182 * 119.99681 * 3 2 1 7 7 C 1.37884 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00053 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99836 * 0.02562 * 7 2 1 10 10 O 1.42108 * 106.39956 * 66.46025 * 9 7 2 11 11 O 1.42092 * 106.40449 * 293.53997 * 9 7 2 12 12 N 1.65597 * 107.21931 * 179.97438 * 9 7 2 13 13 C 1.47086 * 120.97348 * 270.02319 * 12 9 7 14 14 C 1.53275 * 109.16151 * 116.37797 * 13 12 9 15 15 N 1.46436 * 109.23680 * 45.79338 * 14 13 12 16 16 C 1.36410 * 127.54930 * 161.62824 * 15 14 13 17 17 C 1.50697 * 126.62865 * 359.36673 * 16 15 14 18 18 N 1.46503 * 109.47726 * 265.00513 * 17 16 15 19 19 C 1.34940 * 126.03757 * 124.99465 * 18 17 16 20 20 C 1.35317 * 107.74438 * 179.77616 * 19 18 17 21 21 C 1.39872 * 107.92021 * 0.23195 * 20 19 18 22 22 N 1.30838 * 108.20312 * 359.97438 * 21 20 19 23 23 C 1.34841 * 106.73740 * 179.63993 * 16 15 14 24 24 N 1.34308 * 108.07644 * 359.72160 * 23 16 15 25 25 C 1.29981 * 109.15550 * 0.52152 * 24 23 16 26 26 C 1.47450 * 120.97595 * 89.99935 * 12 9 7 27 27 H 0.97006 * 119.99464 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.52348 * 236.28573 * 13 12 9 29 29 H 1.09000 * 109.52512 * 356.47477 * 13 12 9 30 30 H 1.08994 * 109.51206 * 285.86540 * 14 13 12 31 31 H 1.09005 * 109.51249 * 165.71832 * 14 13 12 32 32 H 1.09005 * 109.47160 * 145.00644 * 17 16 15 33 33 H 1.08999 * 109.47383 * 25.01134 * 17 16 15 34 34 H 1.08002 * 126.13053 * 0.04913 * 19 18 17 35 35 H 1.08003 * 126.04109 * 180.21059 * 20 19 18 36 36 H 1.08001 * 125.89461 * 180.02562 * 21 20 19 37 37 H 1.08003 * 125.96283 * 179.86769 * 23 16 15 38 38 H 1.09005 * 109.93616 * 103.86965 * 26 12 9 39 39 H 1.08995 * 109.93934 * 342.64378 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2495 11 8 0.4509 -2.7950 1.2499 12 7 2.2482 -3.9355 0.0005 13 6 2.7626 -4.4907 -1.2606 14 6 4.2651 -4.2046 -1.3604 15 7 4.9032 -4.5247 -0.0818 16 6 6.2287 -4.7445 0.1539 17 6 7.3393 -4.7187 -0.8644 18 7 7.5974 -6.0800 -1.3403 19 6 7.5869 -6.4866 -2.6269 20 6 7.8767 -7.8083 -2.6441 21 6 8.0658 -8.2247 -1.3223 22 7 7.8961 -7.1901 -0.5396 23 6 6.3522 -4.9952 1.4730 24 7 5.1309 -4.9233 2.0270 25 6 4.2587 -4.6497 1.1029 26 6 2.7636 -4.4925 1.2647 27 1 -0.4850 0.8401 -0.0004 28 1 2.5948 -5.5675 -1.2798 29 1 2.2468 -4.0257 -2.1007 30 1 4.4205 -3.1507 -1.5909 31 1 4.7011 -4.8186 -2.1485 32 1 8.2430 -4.3165 -0.4064 33 1 7.0471 -4.0893 -1.7050 34 1 7.3876 -5.8672 -3.4889 35 1 7.9490 -8.4316 -3.5232 36 1 8.3105 -9.2270 -1.0030 37 1 7.2730 -5.2133 1.9936 38 1 2.3063 -5.4631 1.4570 39 1 2.5484 -3.8098 2.0868 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192950417.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:18 Heat of formation + Delta-G solvation = 68.312999 kcal Electronic energy + Delta-G solvation = -27268.119797 eV Core-core repulsion = 23340.696291 eV Total energy + Delta-G solvation = -3927.423506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.28684 -41.14203 -36.79706 -35.52502 -34.46904 -34.17541 -33.28841 -32.99443 -30.49890 -29.90655 -29.29684 -26.77158 -26.26794 -24.57806 -23.32533 -21.54342 -21.21549 -20.50969 -19.49618 -18.46949 -17.69620 -17.27488 -16.92518 -16.45665 -15.97180 -15.43649 -15.15487 -15.10435 -14.45714 -14.37582 -14.23127 -13.76546 -13.64693 -13.63315 -13.20283 -13.03341 -12.93540 -12.58467 -12.30355 -12.22443 -12.08912 -11.64659 -11.32674 -11.29684 -10.79103 -10.71916 -10.59602 -10.49467 -10.34434 -9.88562 -9.60931 -9.52133 -9.35688 -9.19787 -8.79911 -8.65363 -8.19034 -6.82771 -5.46892 1.64869 1.83090 1.93646 2.59793 2.71400 2.76794 2.99575 3.05236 3.09979 3.29303 3.91101 4.16627 4.19705 4.42792 4.46639 4.53096 4.62093 4.64664 4.85719 4.94497 4.98504 5.05185 5.31410 5.41883 5.57168 5.57501 5.58408 5.66255 5.67138 5.82736 5.85882 5.90527 6.04826 6.26335 6.48006 6.48282 6.77464 6.83218 7.16364 7.18739 7.22403 7.56755 7.81497 8.19753 8.75774 10.11276 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.003504 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.142325 B = 7989.133756 C = 8265.538637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.135 3.865 3 Si 0.920 3.080 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.020 5.020 8 H 0.100 0.900 9 S 2.713 3.287 10 O -0.997 6.997 11 O -0.993 6.993 12 N -1.016 6.016 13 C 0.114 3.886 14 C 0.083 3.917 15 N -0.438 5.438 16 C -0.066 4.066 17 C 0.217 3.783 18 N -0.368 5.368 19 C 0.048 3.952 20 C -0.275 4.275 21 C 0.038 3.962 22 N -0.280 5.280 23 C 0.021 3.979 24 N -0.489 5.489 25 C 0.225 3.775 26 C 0.214 3.786 27 H 0.293 0.707 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.171 0.829 35 H 0.145 0.855 36 H 0.180 0.820 37 H 0.170 0.830 38 H 0.091 0.909 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.778 -9.902 -6.632 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.084 4.084 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.187 1.187 7 C -1.153 5.153 8 H 0.118 0.882 9 S 2.814 3.186 10 O -0.987 6.987 11 O -0.984 6.984 12 N -0.850 5.850 13 C -0.013 4.013 14 C -0.042 4.042 15 N -0.120 5.120 16 C -0.180 4.180 17 C 0.095 3.905 18 N -0.151 5.151 19 C -0.098 4.098 20 C -0.305 4.305 21 C -0.148 4.148 22 N -0.101 5.101 23 C -0.130 4.130 24 N -0.207 5.207 25 C -0.039 4.039 26 C 0.086 3.914 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.189 0.811 35 H 0.163 0.837 36 H 0.197 0.803 37 H 0.187 0.813 38 H 0.109 0.891 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.349 -9.475 -4.729 17.039 hybrid contribution 1.335 1.029 -1.858 2.509 sum 14.683 -8.446 -6.587 18.175 Atomic orbital electron populations 1.69872 1.06759 1.31079 1.39546 1.24731 0.94475 1.00772 0.88395 0.86195 0.79931 0.79644 0.79825 1.18923 1.19937 1.18749 1.30489 1.05886 1.11548 1.67419 0.88209 1.00737 0.71984 0.72817 0.73055 1.93366 1.72296 1.87390 1.45646 1.93383 1.72269 1.87261 1.45447 1.58676 1.62058 1.55228 1.09026 1.21514 0.90789 1.00335 0.88695 1.22485 0.95361 1.02922 0.83384 1.45058 1.06045 1.51472 1.09452 1.20718 0.84540 1.15552 0.97214 1.19808 0.95936 0.78464 0.96297 1.48908 1.53694 1.08359 1.04175 1.22591 1.02126 0.96716 0.88317 1.21501 1.15752 0.94957 0.98259 1.23912 1.00415 0.98543 0.91972 1.77441 1.21058 0.92818 1.18743 1.22112 0.96291 1.04265 0.90366 1.70102 0.99564 1.20471 1.30590 1.23672 0.96914 1.02588 0.80761 1.19845 0.82608 1.01403 0.87542 0.89620 0.90754 0.86258 0.88652 0.89166 0.87397 0.88050 0.81136 0.83732 0.80265 0.81324 0.89067 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.87 13.19 55.43 0.73 -23.14 16 2 C 0.13 3.61 5.46 -17.82 -0.10 3.52 16 3 Si 0.92 19.89 29.54 -169.99 -5.02 14.87 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 7 C -1.02 -26.66 9.75 30.60 0.30 -26.36 16 8 H 0.10 2.42 7.81 -52.49 -0.41 2.01 16 9 S 2.71 67.65 4.99 -107.50 -0.54 67.11 16 10 O -1.00 -26.83 16.66 -57.17 -0.95 -27.78 16 11 O -0.99 -27.61 16.96 -57.17 -0.97 -28.58 16 12 N -1.02 -19.19 3.29 -114.06 -0.38 -19.57 16 13 C 0.11 1.69 6.45 -3.58 -0.02 1.66 16 14 C 0.08 1.05 6.74 -3.93 -0.03 1.02 16 15 N -0.44 -6.55 3.13 -109.15 -0.34 -6.89 16 16 C -0.07 -0.89 6.40 -81.76 -0.52 -1.42 16 17 C 0.22 2.10 6.87 -5.19 -0.04 2.06 16 18 N -0.37 -3.97 3.67 -62.54 -0.23 -4.20 16 19 C 0.05 0.43 11.45 -17.23 -0.20 0.23 16 20 C -0.28 -2.48 10.80 -40.01 -0.43 -2.91 16 21 C 0.04 0.39 12.03 -17.36 -0.21 0.19 16 22 N -0.28 -3.55 12.40 30.63 0.38 -3.17 16 23 C 0.02 0.32 11.80 -17.67 -0.21 0.11 16 24 N -0.49 -8.71 11.24 -10.58 -0.12 -8.83 16 25 C 0.23 3.91 7.78 -155.23 -1.21 2.70 16 26 C 0.21 3.77 6.67 -4.43 -0.03 3.75 16 27 H 0.29 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.12 1.77 6.98 -51.93 -0.36 1.41 16 30 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 0.73 7.82 -51.93 -0.41 0.32 16 34 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.17 2.23 8.06 -52.48 -0.42 1.81 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.12 2.24 7.49 -51.93 -0.39 1.85 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -36.84 349.96 -9.36 -46.20 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -4.51 Total: 4.17 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -2.69 Total: -15.46 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: 0.05 Total: -65.80 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -1.92 Total: -56.36 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: 67.65 SS G_CDS: -0.54 Total: 67.11 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.84 -9.36 -46.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192950417.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.511 kcal (2) G-P(sol) polarization free energy of solvation -36.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds