Wall clock time and date at job start Tue Mar 31 2020 19:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00384 * 2 1 4 4 H 1.48494 * 109.46964 * 239.99741 * 3 2 1 5 5 H 1.48496 * 109.46892 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47182 * 119.99681 * 3 2 1 7 7 C 1.37884 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00053 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99836 * 0.02562 * 7 2 1 10 10 O 1.42108 * 106.39956 * 66.46025 * 9 7 2 11 11 O 1.42092 * 106.40449 * 293.53997 * 9 7 2 12 12 N 1.65597 * 107.21931 * 179.97438 * 9 7 2 13 13 C 1.47086 * 120.97348 * 270.02319 * 12 9 7 14 14 C 1.53275 * 109.16151 * 116.37797 * 13 12 9 15 15 N 1.46436 * 109.23680 * 45.79338 * 14 13 12 16 16 C 1.36410 * 127.54930 * 161.62824 * 15 14 13 17 17 C 1.50697 * 126.62865 * 359.36673 * 16 15 14 18 18 N 1.46503 * 109.47726 * 265.00513 * 17 16 15 19 19 C 1.34940 * 126.03757 * 124.99465 * 18 17 16 20 20 C 1.35317 * 107.74438 * 179.77616 * 19 18 17 21 21 C 1.39872 * 107.92021 * 0.23195 * 20 19 18 22 22 N 1.30838 * 108.20312 * 359.97438 * 21 20 19 23 23 C 1.34841 * 106.73740 * 179.63993 * 16 15 14 24 24 N 1.34308 * 108.07644 * 359.72160 * 23 16 15 25 25 C 1.29981 * 109.15550 * 0.52152 * 24 23 16 26 26 C 1.47450 * 120.97595 * 89.99935 * 12 9 7 27 27 H 0.97006 * 119.99464 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.52348 * 236.28573 * 13 12 9 29 29 H 1.09000 * 109.52512 * 356.47477 * 13 12 9 30 30 H 1.08994 * 109.51206 * 285.86540 * 14 13 12 31 31 H 1.09005 * 109.51249 * 165.71832 * 14 13 12 32 32 H 1.09005 * 109.47160 * 145.00644 * 17 16 15 33 33 H 1.08999 * 109.47383 * 25.01134 * 17 16 15 34 34 H 1.08002 * 126.13053 * 0.04913 * 19 18 17 35 35 H 1.08003 * 126.04109 * 180.21059 * 20 19 18 36 36 H 1.08001 * 125.89461 * 180.02562 * 21 20 19 37 37 H 1.08003 * 125.96283 * 179.86769 * 23 16 15 38 38 H 1.09005 * 109.93616 * 103.86965 * 26 12 9 39 39 H 1.08995 * 109.93934 * 342.64378 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2495 11 8 0.4509 -2.7950 1.2499 12 7 2.2482 -3.9355 0.0005 13 6 2.7626 -4.4907 -1.2606 14 6 4.2651 -4.2046 -1.3604 15 7 4.9032 -4.5247 -0.0818 16 6 6.2287 -4.7445 0.1539 17 6 7.3393 -4.7187 -0.8644 18 7 7.5974 -6.0800 -1.3403 19 6 7.5869 -6.4866 -2.6269 20 6 7.8767 -7.8083 -2.6441 21 6 8.0658 -8.2247 -1.3223 22 7 7.8961 -7.1901 -0.5396 23 6 6.3522 -4.9952 1.4730 24 7 5.1309 -4.9233 2.0270 25 6 4.2587 -4.6497 1.1029 26 6 2.7636 -4.4925 1.2647 27 1 -0.4850 0.8401 -0.0004 28 1 2.5948 -5.5675 -1.2798 29 1 2.2468 -4.0257 -2.1007 30 1 4.4205 -3.1507 -1.5909 31 1 4.7011 -4.8186 -2.1485 32 1 8.2430 -4.3165 -0.4064 33 1 7.0471 -4.0893 -1.7050 34 1 7.3876 -5.8672 -3.4889 35 1 7.9490 -8.4316 -3.5232 36 1 8.3105 -9.2270 -1.0030 37 1 7.2730 -5.2133 1.9936 38 1 2.3063 -5.4631 1.4570 39 1 2.5484 -3.8098 2.0868 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192950417.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:17 Heat of formation + Delta-G solvation = 40.694267 kcal Electronic energy + Delta-G solvation = -27269.317435 eV Core-core repulsion = 23340.696291 eV Total energy + Delta-G solvation = -3928.621144 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.42709 -41.85540 -38.11691 -37.56907 -36.24378 -35.45947 -35.22070 -34.12188 -31.41293 -30.95248 -30.28721 -28.31084 -27.78220 -25.71681 -24.57203 -22.46805 -21.90882 -21.44279 -21.09906 -20.04607 -19.13455 -18.51187 -18.16621 -17.91683 -17.30995 -16.92446 -16.50370 -16.26281 -15.98002 -15.49969 -15.30370 -15.09886 -15.06593 -14.50722 -14.27062 -14.18322 -14.02114 -13.66844 -13.64621 -13.53012 -13.28559 -13.20119 -13.04350 -12.87323 -12.59014 -12.43623 -12.36775 -12.19757 -11.51207 -11.27864 -11.15078 -11.03266 -10.67229 -10.36446 -10.20160 -9.50770 -9.31513 -8.79862 -7.54056 0.09327 0.69857 1.07848 1.30552 1.32925 1.45716 1.62151 1.76293 2.03819 2.15051 2.16945 2.53667 2.59436 3.19314 3.35704 3.42834 3.67132 3.77131 3.86721 3.95189 4.09347 4.14651 4.21207 4.24290 4.32976 4.40638 4.42333 4.46243 4.63372 4.69143 4.77401 4.89583 4.97227 5.21438 5.22429 5.29195 5.52692 5.74294 5.80237 5.82800 6.05083 6.19073 6.73646 6.85675 7.00870 8.15877 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.003504 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.142325 B = 7989.133756 C = 8265.538637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.984 3.016 4 H -0.245 1.245 5 H -0.263 1.263 6 H -0.258 1.258 7 C -1.037 5.037 8 H 0.114 0.886 9 S 2.723 3.277 10 O -1.024 7.024 11 O -1.034 7.034 12 N -1.012 6.012 13 C 0.103 3.897 14 C 0.083 3.917 15 N -0.436 5.436 16 C -0.043 4.043 17 C 0.215 3.785 18 N -0.377 5.377 19 C 0.053 3.947 20 C -0.285 4.285 21 C 0.029 3.971 22 N -0.328 5.328 23 C -0.008 4.008 24 N -0.516 5.516 25 C 0.196 3.804 26 C 0.214 3.786 27 H 0.300 0.700 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.134 0.866 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.209 0.791 35 H 0.165 0.835 36 H 0.196 0.804 37 H 0.180 0.820 38 H 0.107 0.893 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.356 -9.641 -8.992 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.803 3.197 4 H -0.168 1.168 5 H -0.187 1.187 6 H -0.182 1.182 7 C -1.171 5.171 8 H 0.132 0.868 9 S 2.825 3.175 10 O -1.015 7.015 11 O -1.025 7.025 12 N -0.848 5.848 13 C -0.022 4.022 14 C -0.040 4.040 15 N -0.118 5.118 16 C -0.158 4.158 17 C 0.094 3.906 18 N -0.160 5.160 19 C -0.092 4.092 20 C -0.315 4.315 21 C -0.157 4.157 22 N -0.150 5.150 23 C -0.158 4.158 24 N -0.235 5.235 25 C -0.068 4.068 26 C 0.087 3.913 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.137 0.863 30 H 0.119 0.881 31 H 0.152 0.848 32 H 0.141 0.859 33 H 0.153 0.847 34 H 0.226 0.774 35 H 0.183 0.817 36 H 0.213 0.787 37 H 0.197 0.803 38 H 0.125 0.875 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.922 -9.236 -7.107 19.731 hybrid contribution 0.611 0.800 -1.156 1.533 sum 16.533 -8.436 -8.263 20.317 Atomic orbital electron populations 1.69962 1.08641 1.32534 1.41035 1.25917 0.95303 1.05053 0.87514 0.85236 0.78906 0.74920 0.80651 1.16826 1.18698 1.18235 1.30843 1.06740 1.12440 1.67032 0.86827 1.00045 0.72377 0.73292 0.71736 1.93316 1.73710 1.88044 1.46387 1.93322 1.74122 1.88051 1.46968 1.58062 1.61536 1.54119 1.11122 1.21858 0.92438 1.01407 0.86512 1.22657 0.93629 1.04295 0.83435 1.45206 1.06480 1.50718 1.09405 1.21276 0.84681 1.12304 0.97547 1.20091 0.94993 0.78793 0.96721 1.48910 1.54175 1.08154 1.04767 1.23240 1.00492 0.97073 0.88434 1.21854 1.15655 0.95623 0.98327 1.24368 0.99634 0.98969 0.92746 1.77398 1.23113 0.94055 1.20406 1.22419 0.95902 1.05830 0.91631 1.69997 1.00782 1.20950 1.31796 1.23371 0.96437 1.05026 0.81978 1.19815 0.83759 1.01466 0.86288 0.88942 0.88570 0.86342 0.88063 0.84818 0.85914 0.84661 0.77441 0.81731 0.78718 0.80283 0.87476 0.88231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.32 13.19 21.45 0.28 -51.04 16 2 C 0.08 4.06 5.46 84.66 0.46 4.52 16 3 Si 0.98 39.77 29.54 68.60 2.03 41.80 16 4 H -0.24 -9.04 7.11 99.48 0.71 -8.33 16 5 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -1.04 -54.42 9.75 67.74 0.66 -53.76 16 8 H 0.11 5.43 7.81 -2.91 -0.02 5.41 16 9 S 2.72 138.77 4.99 -56.49 -0.28 138.49 16 10 O -1.02 -56.23 16.66 -128.00 -2.13 -58.36 16 11 O -1.03 -59.85 16.96 -128.00 -2.17 -62.03 16 12 N -1.01 -38.18 3.29 -514.78 -1.69 -39.87 16 13 C 0.10 2.88 6.45 86.36 0.56 3.44 16 14 C 0.08 1.82 6.74 86.48 0.58 2.41 16 15 N -0.44 -12.07 3.13 -499.23 -1.56 -13.63 16 16 C -0.04 -1.05 6.40 41.07 0.26 -0.79 16 17 C 0.22 3.36 6.87 85.63 0.59 3.94 16 18 N -0.38 -6.86 3.67 -351.79 -1.29 -8.15 16 19 C 0.05 0.70 11.45 83.54 0.96 1.66 16 20 C -0.29 -4.22 10.80 21.99 0.24 -3.98 16 21 C 0.03 0.54 12.03 85.24 1.03 1.56 16 22 N -0.33 -7.75 12.40 -57.02 -0.71 -8.46 16 23 C -0.01 -0.23 11.80 83.53 0.99 0.75 16 24 N -0.52 -18.47 11.24 -187.39 -2.11 -20.58 16 25 C 0.20 6.75 7.78 138.31 1.08 7.82 16 26 C 0.21 7.71 6.67 85.61 0.57 8.28 16 27 H 0.30 15.58 8.31 -92.70 -0.77 14.81 16 28 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.12 3.35 6.98 -2.39 -0.02 3.33 16 30 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.14 1.20 7.82 -2.39 -0.02 1.18 16 34 H 0.21 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.20 2.64 8.06 -2.91 -0.02 2.62 16 37 H 0.18 4.67 8.06 -2.91 -0.02 4.65 16 38 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 39 H 0.10 3.93 7.49 -2.39 -0.02 3.91 16 Total: -1.00 -82.79 349.96 -0.59 -83.38 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 1.08 Total: 22.59 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 7.97 Total: -24.15 kcal Atomic # 7 Polarization: -134.64 SS G_CDS: -7.08 Total: -141.72 kcal Atomic # 8 Polarization: -116.08 SS G_CDS: -4.30 Total: -120.38 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Atomic # 16 Polarization: 138.77 SS G_CDS: -0.28 Total: 138.49 kcal Total: -82.79 -0.59 -83.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192950417.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.074 kcal (2) G-P(sol) polarization free energy of solvation -82.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds