Wall clock time and date at job start Tue Mar 31 2020 20:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 7 7 C 1.53006 * 109.47194 * 59.71653 * 5 3 2 8 8 C 1.52992 * 109.47172 * 185.00251 * 7 5 3 9 9 O 1.43760 * 109.63431 * 294.36534 * 8 7 5 10 10 C 1.44780 * 104.81385 * 215.80601 * 9 8 7 11 11 C 1.54916 * 101.72260 * 36.10604 * 10 9 8 12 12 O 1.43362 * 109.63169 * 175.00184 * 8 7 5 13 13 N 1.46499 * 109.47547 * 179.72203 * 5 3 2 14 14 S 1.65597 * 120.00111 * 94.99804 * 13 5 3 15 15 O 1.42105 * 104.27689 * 181.07309 * 14 13 5 16 16 O 1.42102 * 104.27873 * 308.92825 * 14 13 5 17 17 C 1.81398 * 104.44955 * 65.00245 * 14 13 5 18 18 C 1.53001 * 109.47155 * 179.97438 * 17 14 13 19 19 C 1.50695 * 109.47489 * 179.97438 * 18 17 14 20 20 H 1.08010 * 119.99768 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00644 * 179.97438 * 19 18 17 22 22 N 1.31522 * 119.99264 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00410 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47083 * 60.00189 * 23 21 19 25 25 H 1.48495 * 109.47280 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47272 * 300.00161 * 23 21 19 27 27 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 28 28 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 30 30 H 1.09000 * 109.46948 * 305.00599 * 7 5 3 31 31 H 1.09002 * 109.46524 * 65.00560 * 7 5 3 32 32 H 1.09003 * 109.63352 * 54.61068 * 8 7 5 33 33 H 1.08994 * 110.98160 * 277.99433 * 10 9 8 34 34 H 1.09008 * 111.00490 * 154.22355 * 10 9 8 35 35 H 1.09004 * 110.69531 * 206.03551 * 11 10 9 36 36 H 1.09002 * 110.84530 * 82.90366 * 11 10 9 37 37 H 0.97004 * 119.99906 * 274.99747 * 13 5 3 38 38 H 1.09002 * 109.47251 * 299.99784 * 17 14 13 39 39 H 1.08996 * 109.47373 * 60.00010 * 17 14 13 40 40 H 1.09001 * 109.47379 * 300.00128 * 18 17 14 41 41 H 1.09010 * 109.46956 * 60.00025 * 18 17 14 42 42 H 0.97003 * 119.99362 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 1 3.9595 0.7833 0.8836 7 6 4.1084 0.5780 -1.2558 8 6 5.6371 0.5484 -1.2005 9 8 6.1493 1.8894 -1.2785 10 6 7.3695 1.7752 -2.0494 11 6 6.9931 0.6755 -3.0735 12 8 6.1446 -0.2051 -2.3095 13 7 3.9816 2.6799 -0.0117 14 16 4.3419 3.4423 1.4135 15 8 4.6713 4.7696 1.0274 16 8 3.2205 3.1784 2.2454 17 6 5.8109 2.5760 2.0315 18 6 6.2474 3.1962 3.3603 19 6 7.4675 2.4762 3.8741 20 1 7.8897 1.6582 3.3091 21 6 8.0455 2.8622 5.0649 22 7 7.5316 3.8586 5.7526 23 14 9.5582 1.9701 5.7014 24 1 10.6586 2.0937 4.7118 25 1 9.9825 2.5728 6.9905 26 1 9.2365 0.5351 5.9073 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.7265 -0.4421 -1.2973 31 1 3.7874 1.1227 -2.1437 32 1 5.9609 0.0888 -0.2666 33 1 8.2000 1.4549 -1.4203 34 1 7.6030 2.7136 -2.5525 35 1 7.8833 0.1495 -3.4185 36 1 6.4478 1.1006 -3.9162 37 1 4.0456 3.1635 -0.8501 38 1 5.5751 1.5225 2.1820 39 1 6.6189 2.6674 1.3056 40 1 6.4834 4.2496 3.2096 41 1 5.4396 3.1052 4.0865 42 1 7.9385 4.1304 6.5902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196245927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:55 Heat of formation + Delta-G solvation = -245.127996 kcal Electronic energy + Delta-G solvation = -28998.402109 eV Core-core repulsion = 24685.492360 eV Total energy + Delta-G solvation = -4312.909749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.117 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.84132 -40.31869 -36.99788 -36.44347 -35.80754 -35.35785 -35.16862 -33.88255 -31.60726 -31.15008 -29.51960 -27.96200 -25.61410 -25.56805 -23.52587 -22.33681 -21.66418 -21.07246 -19.03448 -18.08437 -17.65183 -17.36815 -17.18493 -16.86643 -16.36986 -16.28715 -15.97122 -15.60742 -15.26580 -14.86962 -14.65401 -14.54272 -13.96582 -13.79644 -13.50660 -13.31914 -13.06640 -12.95282 -12.80115 -12.50586 -12.24564 -12.01945 -11.74867 -11.57429 -11.51667 -11.43661 -11.40842 -11.06419 -10.95139 -10.86431 -10.81126 -10.47029 -10.41910 -10.35470 -10.02141 -9.75127 -9.54718 -9.06124 -8.49541 -6.11654 -4.17338 0.79576 2.13219 2.49919 3.05564 3.22077 3.26518 3.31730 3.33137 3.68549 4.25181 4.29606 4.37709 4.40528 4.52030 4.58992 4.68712 4.75228 4.81115 4.92512 4.99559 5.01094 5.08761 5.23360 5.24046 5.25258 5.40430 5.44839 5.55274 5.57492 5.65612 5.73782 5.89105 6.27419 6.50475 6.77088 7.07667 7.31585 7.37857 7.70268 7.80650 8.18018 8.85630 9.47112 10.99389 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010058 B = 0.004380 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.258041 B = 6391.523326 C = 7831.966004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.445 3.555 4 O -0.479 6.479 5 C 0.176 3.824 6 H 0.125 0.875 7 C -0.133 4.133 8 C 0.233 3.767 9 O -0.366 6.366 10 C 0.013 3.987 11 C 0.021 3.979 12 O -0.383 6.383 13 N -1.093 6.093 14 S 2.589 3.411 15 O -0.960 6.960 16 O -0.961 6.961 17 C -0.587 4.587 18 C 0.029 3.971 19 C -0.519 4.519 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.275 1.275 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.421 0.579 38 H 0.114 0.886 39 H 0.127 0.873 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 -10.485 -18.944 22.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.283 3.717 4 O -0.363 6.363 5 C 0.065 3.935 6 H 0.142 0.858 7 C -0.172 4.172 8 C 0.137 3.863 9 O -0.286 6.286 10 C -0.063 4.063 11 C -0.055 4.055 12 O -0.304 6.304 13 N -0.848 5.848 14 S 2.686 3.314 15 O -0.951 6.951 16 O -0.951 6.951 17 C -0.720 4.720 18 C -0.010 4.010 19 C -0.558 4.558 20 H 0.079 0.921 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.084 0.916 30 H 0.130 0.870 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.256 0.744 38 H 0.133 0.867 39 H 0.146 0.854 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.445 -9.434 -18.210 21.497 hybrid contribution 1.177 -0.614 -0.061 1.329 sum -5.268 -10.048 -18.271 21.506 Atomic orbital electron populations 1.23265 0.76358 1.03562 1.02688 1.86479 1.23455 1.33348 1.84410 1.24265 0.92371 0.81785 0.73272 1.90692 1.66358 1.36288 1.42956 1.19981 0.87054 0.84435 1.02066 0.85761 1.22305 0.94583 1.03085 0.97266 1.24075 0.92004 0.79217 0.90962 1.89325 1.38279 1.26553 1.74415 1.24453 0.88682 1.00673 0.92523 1.24208 0.94850 0.91368 0.95098 1.88889 1.65551 1.35935 1.39990 1.55707 1.82883 1.19023 1.27231 1.05798 0.77440 0.75119 0.73044 1.93552 1.85973 1.34316 1.81215 1.93570 1.48858 1.85571 1.67099 1.30461 1.17591 1.12519 1.11473 1.18958 0.98376 0.96720 0.86982 1.20939 1.11416 1.17303 1.06175 0.92105 1.25066 0.97602 0.95126 0.96668 1.69953 1.40585 1.27067 1.15200 0.86541 0.82756 0.79818 0.78197 1.20129 1.21102 1.20091 0.92058 0.88102 0.91648 0.87021 0.89266 0.88720 0.90007 0.87067 0.88245 0.90666 0.74362 0.86710 0.85439 0.94846 0.94907 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.18 10.36 -39.26 -0.41 -4.59 16 3 C 0.44 6.20 7.29 36.00 0.26 6.46 16 4 O -0.48 -8.34 16.18 -18.76 -0.30 -8.64 16 5 C 0.18 2.11 2.58 -69.08 -0.18 1.93 16 6 H 0.12 1.31 7.15 -51.93 -0.37 0.94 16 7 C -0.13 -1.20 4.95 -26.73 -0.13 -1.33 16 8 C 0.23 2.25 4.01 37.15 0.15 2.40 16 9 O -0.37 -3.87 9.46 -59.04 -0.56 -4.42 16 10 C 0.01 0.11 7.95 38.17 0.30 0.41 16 11 C 0.02 0.15 8.07 38.17 0.31 0.46 16 12 O -0.38 -3.68 11.21 -59.04 -0.66 -4.35 16 13 N -1.09 -15.45 3.40 -5.88 -0.02 -15.47 16 14 S 2.59 49.03 5.38 -107.50 -0.58 48.45 16 15 O -0.96 -21.02 18.08 -57.54 -1.04 -22.06 16 16 O -0.96 -21.27 17.78 -57.54 -1.02 -22.30 16 17 C -0.59 -11.10 5.90 37.16 0.22 -10.88 16 18 C 0.03 0.73 4.98 -27.89 -0.14 0.59 16 19 C -0.52 -14.07 9.11 -34.44 -0.31 -14.38 16 20 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 23 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 30 H 0.11 0.83 7.99 -51.93 -0.41 0.42 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.11 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.42 5.31 8.40 -34.47 -0.29 5.02 16 38 H 0.11 1.86 7.44 -51.92 -0.39 1.47 16 39 H 0.13 2.18 8.14 -51.93 -0.42 1.76 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.03 0.88 8.14 -51.92 -0.42 0.46 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -38.27 371.59 -7.90 -46.17 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.08 Total: 2.79 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 1.45 Total: -11.44 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.72 Total: -41.10 kcal Atomic # 8 Polarization: -62.36 SS G_CDS: -3.99 Total: -66.36 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 49.03 SS G_CDS: -0.58 Total: 48.45 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.27 -7.90 -46.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196245927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.955 kcal (2) G-P(sol) polarization free energy of solvation -38.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds