Wall clock time and date at job start Tue Mar 31 2020 20:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 7 7 C 1.53006 * 109.47194 * 59.71653 * 5 3 2 8 8 C 1.52992 * 109.47172 * 185.00251 * 7 5 3 9 9 O 1.43760 * 109.63431 * 294.36534 * 8 7 5 10 10 C 1.44780 * 104.81385 * 215.80601 * 9 8 7 11 11 C 1.54916 * 101.72260 * 36.10604 * 10 9 8 12 12 O 1.43362 * 109.63169 * 175.00184 * 8 7 5 13 13 N 1.46499 * 109.47547 * 179.72203 * 5 3 2 14 14 S 1.65597 * 120.00111 * 94.99804 * 13 5 3 15 15 O 1.42105 * 104.27689 * 181.07309 * 14 13 5 16 16 O 1.42102 * 104.27873 * 308.92825 * 14 13 5 17 17 C 1.81398 * 104.44955 * 65.00245 * 14 13 5 18 18 C 1.53001 * 109.47155 * 179.97438 * 17 14 13 19 19 C 1.50695 * 109.47489 * 179.97438 * 18 17 14 20 20 H 1.08010 * 119.99768 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00644 * 179.97438 * 19 18 17 22 22 N 1.31522 * 119.99264 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00410 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47083 * 60.00189 * 23 21 19 25 25 H 1.48495 * 109.47280 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47272 * 300.00161 * 23 21 19 27 27 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 28 28 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 30 30 H 1.09000 * 109.46948 * 305.00599 * 7 5 3 31 31 H 1.09002 * 109.46524 * 65.00560 * 7 5 3 32 32 H 1.09003 * 109.63352 * 54.61068 * 8 7 5 33 33 H 1.08994 * 110.98160 * 277.99433 * 10 9 8 34 34 H 1.09008 * 111.00490 * 154.22355 * 10 9 8 35 35 H 1.09004 * 110.69531 * 206.03551 * 11 10 9 36 36 H 1.09002 * 110.84530 * 82.90366 * 11 10 9 37 37 H 0.97004 * 119.99906 * 274.99747 * 13 5 3 38 38 H 1.09002 * 109.47251 * 299.99784 * 17 14 13 39 39 H 1.08996 * 109.47373 * 60.00010 * 17 14 13 40 40 H 1.09001 * 109.47379 * 300.00128 * 18 17 14 41 41 H 1.09010 * 109.46956 * 60.00025 * 18 17 14 42 42 H 0.97003 * 119.99362 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 1 3.9595 0.7833 0.8836 7 6 4.1084 0.5780 -1.2558 8 6 5.6371 0.5484 -1.2005 9 8 6.1493 1.8894 -1.2785 10 6 7.3695 1.7752 -2.0494 11 6 6.9931 0.6755 -3.0735 12 8 6.1446 -0.2051 -2.3095 13 7 3.9816 2.6799 -0.0117 14 16 4.3419 3.4423 1.4135 15 8 4.6713 4.7696 1.0274 16 8 3.2205 3.1784 2.2454 17 6 5.8109 2.5760 2.0315 18 6 6.2474 3.1962 3.3603 19 6 7.4675 2.4762 3.8741 20 1 7.8897 1.6582 3.3091 21 6 8.0455 2.8622 5.0649 22 7 7.5316 3.8586 5.7526 23 14 9.5582 1.9701 5.7014 24 1 10.6586 2.0937 4.7118 25 1 9.9825 2.5728 6.9905 26 1 9.2365 0.5351 5.9073 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.7265 -0.4421 -1.2973 31 1 3.7874 1.1227 -2.1437 32 1 5.9609 0.0888 -0.2666 33 1 8.2000 1.4549 -1.4203 34 1 7.6030 2.7136 -2.5525 35 1 7.8833 0.1495 -3.4185 36 1 6.4478 1.1006 -3.9162 37 1 4.0456 3.1635 -0.8501 38 1 5.5751 1.5225 2.1820 39 1 6.6189 2.6674 1.3056 40 1 6.4834 4.2496 3.2096 41 1 5.4396 3.1052 4.0865 42 1 7.9385 4.1304 6.5902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196245927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:54 Heat of formation + Delta-G solvation = -275.789278 kcal Electronic energy + Delta-G solvation = -28999.731682 eV Core-core repulsion = 24685.492360 eV Total energy + Delta-G solvation = -4314.239322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.117 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.75060 -41.10734 -38.25166 -37.83074 -37.02151 -36.85555 -35.89050 -35.84285 -33.11087 -32.47062 -30.30070 -28.70863 -27.57641 -26.43847 -24.11337 -23.63254 -23.02885 -22.08414 -20.45210 -19.25648 -18.92568 -18.51892 -18.16615 -18.01889 -17.61575 -17.23876 -17.02633 -16.79684 -16.61038 -16.49589 -15.94807 -15.50934 -15.07887 -14.73364 -14.66433 -14.43702 -14.23103 -13.96322 -13.73277 -13.70592 -13.55970 -13.21711 -13.14157 -13.02224 -12.89329 -12.83544 -12.73894 -12.65359 -12.22016 -12.18045 -12.13845 -11.93316 -11.78896 -11.70090 -11.22193 -11.06707 -10.70950 -10.60502 -10.44586 -8.22236 -6.36146 -0.73921 1.07750 1.43922 1.47317 1.49704 1.55346 1.84926 2.41082 2.53160 2.80232 3.00560 3.11608 3.25085 3.50914 3.68360 3.72428 3.81040 3.96190 4.09346 4.09859 4.18768 4.25930 4.32197 4.34895 4.36368 4.49639 4.71273 4.73369 4.76539 4.82661 4.89832 4.96689 5.12633 5.28718 5.30384 5.31375 5.71618 5.99165 6.08734 6.13984 6.66871 6.77471 7.33988 8.90090 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010058 B = 0.004380 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.258041 B = 6391.523326 C = 7831.966004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.354 6.354 3 C 0.444 3.556 4 O -0.522 6.522 5 C 0.167 3.833 6 H 0.142 0.858 7 C -0.121 4.121 8 C 0.229 3.771 9 O -0.387 6.387 10 C 0.005 3.995 11 C 0.021 3.979 12 O -0.394 6.394 13 N -1.077 6.077 14 S 2.607 3.393 15 O -0.996 6.996 16 O -0.997 6.997 17 C -0.575 4.575 18 C 0.021 3.979 19 C -0.533 4.533 20 H 0.081 0.919 21 C -0.005 4.005 22 N -0.937 5.937 23 Si 0.974 3.026 24 H -0.262 1.262 25 H -0.288 1.288 26 H -0.261 1.261 27 H 0.065 0.935 28 H 0.139 0.861 29 H 0.051 0.949 30 H 0.133 0.867 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.430 0.570 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.003 0.997 41 H 0.005 0.995 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 -13.238 -20.568 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.269 6.269 3 C 0.285 3.715 4 O -0.410 6.410 5 C 0.057 3.943 6 H 0.159 0.841 7 C -0.160 4.160 8 C 0.133 3.867 9 O -0.308 6.308 10 C -0.071 4.071 11 C -0.055 4.055 12 O -0.316 6.316 13 N -0.837 5.837 14 S 2.704 3.296 15 O -0.986 6.986 16 O -0.987 6.987 17 C -0.708 4.708 18 C -0.018 4.018 19 C -0.572 4.572 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.576 5.576 23 Si 0.797 3.203 24 H -0.186 1.186 25 H -0.214 1.214 26 H -0.186 1.186 27 H 0.083 0.917 28 H 0.157 0.843 29 H 0.070 0.930 30 H 0.151 0.849 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.103 0.897 37 H 0.267 0.733 38 H 0.165 0.835 39 H 0.169 0.831 40 H 0.022 0.978 41 H 0.023 0.977 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.282 -12.214 -19.863 23.908 hybrid contribution 0.741 0.199 0.368 0.851 sum -4.541 -12.015 -19.495 23.346 Atomic orbital electron populations 1.23577 0.74914 1.05921 1.02277 1.86474 1.24848 1.31931 1.83687 1.24630 0.93076 0.81777 0.72046 1.90682 1.67390 1.37710 1.45195 1.20371 0.86221 0.83115 1.04586 0.84055 1.22265 0.94360 1.03748 0.95595 1.24151 0.92074 0.79044 0.91398 1.89299 1.39309 1.27201 1.74949 1.24642 0.87904 1.01796 0.92718 1.24368 0.95369 0.90980 0.94768 1.88868 1.65978 1.36511 1.40214 1.55158 1.82510 1.20265 1.25770 1.04933 0.76810 0.74434 0.73382 1.93494 1.86317 1.36862 1.81959 1.93524 1.50341 1.85942 1.68903 1.30267 1.18188 1.13794 1.08533 1.18825 0.97534 0.95666 0.89753 1.21459 1.11683 1.17599 1.06422 0.90078 1.26126 1.01157 0.95886 0.97114 1.70118 1.42592 1.29127 1.15806 0.85369 0.78624 0.78840 0.77446 1.18635 1.21392 1.18595 0.91657 0.84345 0.92994 0.84936 0.88757 0.88199 0.90012 0.85831 0.86417 0.89696 0.73255 0.83462 0.83144 0.97847 0.97698 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.35 -7.54 10.36 -51.41 -0.53 -8.07 16 3 C 0.44 11.88 7.29 71.23 0.52 12.40 16 4 O -0.52 -18.19 16.18 21.94 0.36 -17.84 16 5 C 0.17 3.70 2.58 44.25 0.11 3.81 16 6 H 0.14 2.63 7.15 -2.38 -0.02 2.61 16 7 C -0.12 -1.84 4.95 30.59 0.15 -1.69 16 8 C 0.23 3.78 4.01 71.98 0.29 4.07 16 9 O -0.39 -7.32 9.46 -126.22 -1.19 -8.51 16 10 C 0.01 0.07 7.95 72.64 0.58 0.65 16 11 C 0.02 0.24 8.07 72.64 0.59 0.82 16 12 O -0.39 -6.45 11.21 -126.22 -1.42 -7.86 16 13 N -1.08 -29.45 3.40 -172.52 -0.59 -30.04 16 14 S 2.61 99.41 5.38 -56.49 -0.30 99.11 16 15 O -1.00 -44.65 18.08 -127.65 -2.31 -46.96 16 16 O -1.00 -45.11 17.78 -127.65 -2.27 -47.38 16 17 C -0.57 -21.21 5.90 71.98 0.42 -20.78 16 18 C 0.02 1.10 4.98 29.85 0.15 1.25 16 19 C -0.53 -28.64 9.11 25.60 0.23 -28.40 16 20 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 21 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 22 N -0.94 -56.82 13.29 21.45 0.28 -56.53 16 23 Si 0.97 42.30 29.54 68.60 2.03 44.33 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 25 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 26 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 27 H 0.06 1.04 8.13 -2.38 -0.02 1.02 16 28 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 30 H 0.13 1.52 7.99 -2.39 -0.02 1.50 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.43 10.45 8.40 -96.74 -0.81 9.64 16 38 H 0.15 4.42 7.44 -2.39 -0.02 4.41 16 39 H 0.15 4.87 8.14 -2.39 -0.02 4.85 16 40 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 42 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -84.76 371.59 -1.01 -85.77 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.23 Total: 20.02 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 4.70 Total: -26.03 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -0.30 Total: -86.57 kcal Atomic # 8 Polarization: -129.26 SS G_CDS: -7.36 Total: -136.63 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: 99.41 SS G_CDS: -0.30 Total: 99.11 kcal Total: -84.76 -1.01 -85.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196245927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.019 kcal (2) G-P(sol) polarization free energy of solvation -84.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -274.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds