Wall clock time and date at job start Tue Mar 31 2020 20:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34226 * 117.00197 * 2 1 4 4 O 1.20819 * 119.99814 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99742 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.47227 * 59.99611 * 5 3 2 7 7 C 1.52999 * 109.47066 * 299.99578 * 5 3 2 8 8 C 1.52999 * 109.47479 * 175.00527 * 7 5 3 9 9 O 1.43774 * 110.11852 * 175.00063 * 8 7 5 10 10 C 1.43888 * 107.10973 * 144.32214 * 9 8 7 11 11 C 1.54450 * 105.16827 * 358.24121 * 10 9 8 12 12 O 1.44395 * 110.16289 * 291.77573 * 8 7 5 13 13 N 1.46499 * 109.46928 * 179.97438 * 5 3 2 14 14 S 1.65601 * 120.00012 * 264.99475 * 13 5 3 15 15 O 1.42098 * 104.27917 * 181.06909 * 14 13 5 16 16 O 1.42091 * 104.27789 * 308.93401 * 14 13 5 17 17 C 1.81404 * 104.44696 * 65.00341 * 14 13 5 18 18 C 1.52999 * 109.47116 * 180.02562 * 17 14 13 19 19 C 1.50701 * 109.47063 * 180.02562 * 18 17 14 20 20 H 1.07998 * 120.00085 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99803 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00451 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99951 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47278 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47369 * 119.99311 * 23 21 19 26 26 H 1.48496 * 109.47436 * 239.99501 * 23 21 19 27 27 H 1.08997 * 109.47422 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47046 * 300.00798 * 1 2 3 29 29 H 1.09006 * 109.47074 * 60.00180 * 1 2 3 30 30 H 1.09000 * 109.47111 * 55.00105 * 7 5 3 31 31 H 1.09008 * 109.47024 * 295.00299 * 7 5 3 32 32 H 1.09000 * 110.09382 * 53.39741 * 8 7 5 33 33 H 1.09002 * 110.32076 * 117.19278 * 10 9 8 34 34 H 1.08998 * 110.31969 * 239.29188 * 10 9 8 35 35 H 1.08999 * 110.73379 * 96.60859 * 11 10 9 36 36 H 1.09007 * 110.73130 * 219.90311 * 11 10 9 37 37 H 0.97002 * 120.00218 * 85.00056 * 13 5 3 38 38 H 1.09010 * 109.47086 * 299.99858 * 17 14 13 39 39 H 1.08997 * 109.47160 * 59.99719 * 17 14 13 40 40 H 1.09003 * 109.47054 * 299.99451 * 18 17 14 41 41 H 1.08997 * 109.47482 * 59.99737 * 18 17 14 42 42 H 0.96994 * 120.00784 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9557 0.7807 -0.8908 7 6 4.1138 0.5809 1.2483 8 6 5.6423 0.5510 1.1866 9 8 6.1759 0.0074 2.4060 10 6 7.3425 -0.7577 2.0535 11 6 7.4373 -0.6642 0.5147 12 8 6.0806 -0.3284 0.1285 13 7 3.9818 2.6796 -0.0011 14 16 4.3361 3.4377 -1.4301 15 8 4.7164 4.7516 -1.0449 16 8 5.2579 2.5661 -2.0701 17 6 2.7605 3.4689 -2.3286 18 6 2.9591 4.1527 -3.6828 19 6 1.6501 4.1792 -4.4289 20 1 0.7651 3.7508 -3.9822 21 6 1.5825 4.7495 -5.6824 22 7 2.6602 5.2708 -6.2267 23 14 -0.0400 4.7817 -6.6077 24 1 -1.0926 4.1349 -5.7837 25 1 -0.4235 6.1892 -6.8857 26 1 0.1064 4.0462 -7.8893 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.7320 -0.4390 1.2943 31 1 3.7967 1.1279 2.1363 32 1 6.0302 1.5565 1.0231 33 1 8.2313 -0.3267 2.5144 34 1 7.2220 -1.7959 2.3629 35 1 8.1289 0.1243 0.2179 36 1 7.7359 -1.6216 0.0876 37 1 4.0495 3.1656 0.8356 38 1 2.4112 2.4483 -2.4851 39 1 2.0217 4.0207 -1.7474 40 1 3.3085 5.1734 -3.5266 41 1 3.6978 3.6007 -4.2638 42 1 2.6127 5.6723 -7.1084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196245931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:58 Heat of formation + Delta-G solvation = -247.500604 kcal Electronic energy + Delta-G solvation = -28674.770430 eV Core-core repulsion = 24361.757797 eV Total energy + Delta-G solvation = -4313.012633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.117 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.87533 -40.35986 -37.10630 -36.61064 -35.90849 -35.47319 -35.17283 -33.86080 -31.72789 -31.13101 -29.53812 -28.00914 -25.81149 -25.54216 -23.39746 -22.34478 -21.64526 -21.09569 -19.24434 -18.01902 -17.81267 -17.44769 -17.16578 -16.69365 -16.46288 -16.39809 -16.26533 -15.58549 -15.35309 -15.20114 -14.68297 -14.51851 -13.95398 -13.84064 -13.59130 -13.37596 -12.99189 -12.81673 -12.77834 -12.50308 -12.20916 -12.05068 -11.76204 -11.69659 -11.65545 -11.53048 -11.43473 -11.07252 -11.04148 -10.94408 -10.84605 -10.53241 -10.39074 -10.34835 -10.17395 -9.81860 -9.54872 -9.06935 -8.48050 -6.09962 -4.14734 0.71383 1.99220 2.36714 3.01360 3.21300 3.27002 3.34093 3.38157 3.59201 4.17665 4.26515 4.36463 4.39578 4.43169 4.55824 4.61392 4.67966 4.76052 4.93748 5.00866 5.08252 5.10236 5.11708 5.20538 5.25349 5.36180 5.44054 5.46482 5.56191 5.66802 5.82614 5.88538 6.20241 6.55468 6.63780 6.84795 7.32744 7.38482 7.58033 7.84125 8.21050 8.88875 9.49673 11.01228 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.003624 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.771567 B = 7725.436980 C = 8842.794729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.438 3.562 4 O -0.481 6.481 5 C 0.167 3.833 6 H 0.142 0.858 7 C -0.115 4.115 8 C 0.230 3.770 9 O -0.385 6.385 10 C 0.021 3.979 11 C 0.014 3.986 12 O -0.364 6.364 13 N -1.106 6.106 14 S 2.583 3.417 15 O -0.959 6.959 16 O -0.957 6.957 17 C -0.580 4.580 18 C 0.028 3.972 19 C -0.516 4.516 20 H 0.062 0.938 21 C 0.057 3.943 22 N -0.891 5.891 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.419 0.581 38 H 0.111 0.889 39 H 0.129 0.871 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 -14.934 18.207 23.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.271 6.271 3 C 0.277 3.723 4 O -0.366 6.366 5 C 0.056 3.944 6 H 0.160 0.840 7 C -0.154 4.154 8 C 0.135 3.865 9 O -0.306 6.306 10 C -0.056 4.056 11 C -0.063 4.063 12 O -0.284 6.284 13 N -0.861 5.861 14 S 2.682 3.318 15 O -0.950 6.950 16 O -0.947 6.947 17 C -0.714 4.714 18 C -0.011 4.011 19 C -0.556 4.556 20 H 0.080 0.920 21 C -0.145 4.145 22 N -0.529 5.529 23 Si 0.727 3.273 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.128 0.872 37 H 0.253 0.747 38 H 0.129 0.871 39 H 0.147 0.853 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.088 -14.360 17.682 23.340 hybrid contribution -1.587 0.240 -0.253 1.625 sum 3.501 -14.119 17.429 22.702 Atomic orbital electron populations 1.23332 0.75958 1.03791 1.02969 1.86490 1.23702 1.32958 1.83971 1.24376 0.92420 0.82040 0.73446 1.90727 1.66500 1.36091 1.43325 1.20184 0.86728 0.83891 1.03613 0.84045 1.21864 0.93147 1.03562 0.96841 1.24307 0.93561 0.93515 0.75090 1.88878 1.43031 1.68756 1.29963 1.23977 0.88930 0.97373 0.95301 1.24306 0.85283 1.03112 0.93592 1.89541 1.27721 1.66331 1.44812 1.55947 1.84624 1.18688 1.26843 1.05974 0.78559 0.73687 0.73629 1.93567 1.82521 1.37875 1.81015 1.93573 1.59966 1.66437 1.74765 1.30415 1.18507 1.09971 1.12486 1.18986 0.99722 0.95741 0.86636 1.21033 0.94460 1.38834 1.01241 0.92016 1.25061 0.96855 0.95110 0.97475 1.69960 1.27995 1.38394 1.16591 0.86419 0.83379 0.77858 0.79665 1.19675 1.20794 1.20808 0.88000 0.91858 0.91316 0.87437 0.88236 0.89688 0.89784 0.89791 0.90330 0.87214 0.74667 0.87075 0.85250 0.94795 0.94833 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.10 10.37 -39.25 -0.41 -4.51 16 3 C 0.44 5.74 6.72 36.01 0.24 5.99 16 4 O -0.48 -7.50 14.70 -18.75 -0.28 -7.78 16 5 C 0.17 2.03 2.68 -69.08 -0.19 1.84 16 6 H 0.14 1.79 7.17 -51.93 -0.37 1.41 16 7 C -0.12 -1.12 4.90 -26.73 -0.13 -1.25 16 8 C 0.23 2.50 3.82 37.16 0.14 2.64 16 9 O -0.38 -3.97 11.26 -59.28 -0.67 -4.64 16 10 C 0.02 0.15 8.07 37.92 0.31 0.46 16 11 C 0.01 0.11 7.83 37.92 0.30 0.41 16 12 O -0.36 -4.34 11.16 -59.28 -0.66 -5.00 16 13 N -1.11 -14.81 4.22 -5.88 -0.02 -14.84 16 14 S 2.58 47.39 5.44 -107.50 -0.58 46.81 16 15 O -0.96 -20.13 18.08 -57.54 -1.04 -21.17 16 16 O -0.96 -19.43 17.39 -57.54 -1.00 -20.43 16 17 C -0.58 -11.94 4.72 37.16 0.18 -11.76 16 18 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 19 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 20 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 23 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 29 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.11 0.95 7.99 -51.93 -0.42 0.53 16 31 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.09 0.94 7.62 -51.93 -0.40 0.55 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.42 4.57 8.80 -34.47 -0.30 4.26 16 38 H 0.11 2.12 7.71 -51.92 -0.40 1.72 16 39 H 0.13 2.59 7.80 -51.93 -0.41 2.18 16 40 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -37.43 370.17 -8.07 -45.50 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.06 Total: 3.06 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 1.36 Total: -13.11 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.71 Total: -40.90 kcal Atomic # 8 Polarization: -59.46 SS G_CDS: -4.05 Total: -63.52 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 47.39 SS G_CDS: -0.58 Total: 46.81 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.43 -8.07 -45.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196245931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.005 kcal (2) G-P(sol) polarization free energy of solvation -37.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds