Wall clock time and date at job start Tue Mar 31 2020 20:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34226 * 117.00197 * 2 1 4 4 O 1.20819 * 119.99814 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99742 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.47227 * 59.99611 * 5 3 2 7 7 C 1.52999 * 109.47066 * 299.99578 * 5 3 2 8 8 C 1.52999 * 109.47479 * 175.00527 * 7 5 3 9 9 O 1.43774 * 110.11852 * 175.00063 * 8 7 5 10 10 C 1.43888 * 107.10973 * 144.32214 * 9 8 7 11 11 C 1.54450 * 105.16827 * 358.24121 * 10 9 8 12 12 O 1.44395 * 110.16289 * 291.77573 * 8 7 5 13 13 N 1.46499 * 109.46928 * 179.97438 * 5 3 2 14 14 S 1.65601 * 120.00012 * 264.99475 * 13 5 3 15 15 O 1.42098 * 104.27917 * 181.06909 * 14 13 5 16 16 O 1.42091 * 104.27789 * 308.93401 * 14 13 5 17 17 C 1.81404 * 104.44696 * 65.00341 * 14 13 5 18 18 C 1.52999 * 109.47116 * 180.02562 * 17 14 13 19 19 C 1.50701 * 109.47063 * 180.02562 * 18 17 14 20 20 H 1.07998 * 120.00085 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99803 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00451 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99951 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47278 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47369 * 119.99311 * 23 21 19 26 26 H 1.48496 * 109.47436 * 239.99501 * 23 21 19 27 27 H 1.08997 * 109.47422 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47046 * 300.00798 * 1 2 3 29 29 H 1.09006 * 109.47074 * 60.00180 * 1 2 3 30 30 H 1.09000 * 109.47111 * 55.00105 * 7 5 3 31 31 H 1.09008 * 109.47024 * 295.00299 * 7 5 3 32 32 H 1.09000 * 110.09382 * 53.39741 * 8 7 5 33 33 H 1.09002 * 110.32076 * 117.19278 * 10 9 8 34 34 H 1.08998 * 110.31969 * 239.29188 * 10 9 8 35 35 H 1.08999 * 110.73379 * 96.60859 * 11 10 9 36 36 H 1.09007 * 110.73130 * 219.90311 * 11 10 9 37 37 H 0.97002 * 120.00218 * 85.00056 * 13 5 3 38 38 H 1.09010 * 109.47086 * 299.99858 * 17 14 13 39 39 H 1.08997 * 109.47160 * 59.99719 * 17 14 13 40 40 H 1.09003 * 109.47054 * 299.99451 * 18 17 14 41 41 H 1.08997 * 109.47482 * 59.99737 * 18 17 14 42 42 H 0.96994 * 120.00784 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9557 0.7807 -0.8908 7 6 4.1138 0.5809 1.2483 8 6 5.6423 0.5510 1.1866 9 8 6.1759 0.0074 2.4060 10 6 7.3425 -0.7577 2.0535 11 6 7.4373 -0.6642 0.5147 12 8 6.0806 -0.3284 0.1285 13 7 3.9818 2.6796 -0.0011 14 16 4.3361 3.4377 -1.4301 15 8 4.7164 4.7516 -1.0449 16 8 5.2579 2.5661 -2.0701 17 6 2.7605 3.4689 -2.3286 18 6 2.9591 4.1527 -3.6828 19 6 1.6501 4.1792 -4.4289 20 1 0.7651 3.7508 -3.9822 21 6 1.5825 4.7495 -5.6824 22 7 2.6602 5.2708 -6.2267 23 14 -0.0400 4.7817 -6.6077 24 1 -1.0926 4.1349 -5.7837 25 1 -0.4235 6.1892 -6.8857 26 1 0.1064 4.0462 -7.8893 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.7320 -0.4390 1.2943 31 1 3.7967 1.1279 2.1363 32 1 6.0302 1.5565 1.0231 33 1 8.2313 -0.3267 2.5144 34 1 7.2220 -1.7959 2.3629 35 1 8.1289 0.1243 0.2179 36 1 7.7359 -1.6216 0.0876 37 1 4.0495 3.1656 0.8356 38 1 2.4112 2.4483 -2.4851 39 1 2.0217 4.0207 -1.7474 40 1 3.3085 5.1734 -3.5266 41 1 3.6978 3.6007 -4.2638 42 1 2.6127 5.6723 -7.1084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196245931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:57 Heat of formation + Delta-G solvation = -277.399059 kcal Electronic energy + Delta-G solvation = -28676.066924 eV Core-core repulsion = 24361.757797 eV Total energy + Delta-G solvation = -4314.309127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.117 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.81694 -41.15553 -38.34951 -37.96130 -37.18009 -36.88369 -35.93644 -35.92622 -33.17156 -32.62456 -30.34978 -28.77468 -27.63905 -26.65821 -24.02901 -23.67816 -23.11472 -22.09874 -20.65089 -19.36635 -18.90165 -18.60960 -18.38845 -17.95232 -17.55322 -17.31703 -17.11208 -17.04264 -16.77286 -16.54968 -15.94304 -15.87375 -15.18849 -14.82578 -14.66340 -14.52196 -14.38764 -13.98975 -13.72933 -13.59253 -13.54650 -13.31015 -13.23999 -13.01237 -12.98405 -12.89209 -12.84206 -12.67858 -12.31304 -12.28150 -12.25628 -12.04870 -11.80459 -11.76101 -11.30996 -11.17281 -10.88977 -10.67394 -10.55051 -8.28348 -6.42101 -0.82964 0.97051 1.31167 1.38151 1.39099 1.52496 1.80495 2.35795 2.50479 2.65646 2.83577 3.04581 3.10763 3.47881 3.57019 3.72604 3.75484 3.88681 3.92974 3.97826 4.09333 4.19539 4.25401 4.33090 4.36840 4.37628 4.61584 4.69152 4.73002 4.75904 4.80053 4.85936 5.12261 5.20929 5.23907 5.28828 5.65764 5.83342 5.94756 6.04579 6.58093 6.70145 7.27604 8.84149 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.003624 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.771567 B = 7725.436980 C = 8842.794729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.353 6.353 3 C 0.442 3.558 4 O -0.510 6.510 5 C 0.163 3.837 6 H 0.138 0.862 7 C -0.107 4.107 8 C 0.226 3.774 9 O -0.396 6.396 10 C 0.018 3.982 11 C 0.004 3.996 12 O -0.391 6.391 13 N -1.088 6.088 14 S 2.619 3.381 15 O -0.985 6.985 16 O -0.975 6.975 17 C -0.583 4.583 18 C 0.023 3.977 19 C -0.539 4.539 20 H 0.068 0.932 21 C -0.001 4.001 22 N -0.931 5.931 23 Si 0.973 3.027 24 H -0.260 1.260 25 H -0.276 1.276 26 H -0.274 1.274 27 H 0.135 0.865 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.130 0.870 37 H 0.434 0.566 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.009 0.991 41 H 0.012 0.988 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 -16.641 19.529 25.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C 0.282 3.718 4 O -0.398 6.398 5 C 0.053 3.947 6 H 0.156 0.844 7 C -0.145 4.145 8 C 0.131 3.869 9 O -0.318 6.318 10 C -0.058 4.058 11 C -0.072 4.072 12 O -0.311 6.311 13 N -0.848 5.848 14 S 2.715 3.285 15 O -0.976 6.976 16 O -0.965 6.965 17 C -0.715 4.715 18 C -0.016 4.016 19 C -0.578 4.578 20 H 0.086 0.914 21 C -0.200 4.200 22 N -0.570 5.570 23 Si 0.797 3.203 24 H -0.184 1.184 25 H -0.202 1.202 26 H -0.199 1.199 27 H 0.154 0.846 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.148 0.852 37 H 0.271 0.729 38 H 0.142 0.858 39 H 0.153 0.847 40 H 0.027 0.973 41 H 0.031 0.969 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.169 -16.080 19.013 25.248 hybrid contribution -1.247 0.672 -0.587 1.534 sum 2.922 -15.408 18.426 24.196 Atomic orbital electron populations 1.23619 0.74545 1.05959 1.02636 1.86487 1.25038 1.31869 1.83385 1.24433 0.92569 0.82107 0.72644 1.90723 1.67131 1.37025 1.44888 1.20370 0.86578 0.82734 1.05037 0.84422 1.21866 0.92517 1.04171 0.95995 1.24315 0.94080 0.93236 0.75304 1.88850 1.44092 1.69184 1.29684 1.24198 0.88713 0.98238 0.94668 1.24566 0.83903 1.04188 0.94507 1.89512 1.29475 1.66557 1.45584 1.55398 1.84365 1.19373 1.25678 1.04662 0.77071 0.72921 0.73881 1.93526 1.82600 1.39811 1.81634 1.93550 1.60060 1.66843 1.76041 1.30349 1.21016 1.10062 1.10107 1.18828 0.98599 0.94673 0.89478 1.21464 0.95399 1.38957 1.01980 0.91429 1.26080 1.00897 0.94459 0.98540 1.70088 1.30512 1.39227 1.17221 0.85275 0.78585 0.78179 0.78270 1.18417 1.20151 1.19920 0.84645 0.91206 0.92682 0.86068 0.86340 0.90446 0.88006 0.88072 0.90354 0.85189 0.72850 0.85763 0.84744 0.97279 0.96928 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.35 -7.45 10.37 -51.38 -0.53 -7.99 16 3 C 0.44 10.98 6.72 71.24 0.48 11.46 16 4 O -0.51 -15.40 14.70 21.98 0.32 -15.07 16 5 C 0.16 3.75 2.68 44.25 0.12 3.87 16 6 H 0.14 3.36 7.17 -2.39 -0.02 3.35 16 7 C -0.11 -1.86 4.90 30.59 0.15 -1.71 16 8 C 0.23 4.57 3.82 71.98 0.27 4.85 16 9 O -0.40 -7.39 11.26 -125.98 -1.42 -8.81 16 10 C 0.02 0.22 8.07 72.47 0.59 0.81 16 11 C 0.00 0.07 7.83 72.47 0.57 0.63 16 12 O -0.39 -8.85 11.16 -125.98 -1.41 -10.26 16 13 N -1.09 -28.20 4.22 -172.52 -0.73 -28.92 16 14 S 2.62 96.82 5.44 -56.49 -0.31 96.51 16 15 O -0.99 -41.79 18.08 -127.65 -2.31 -44.09 16 16 O -0.98 -39.92 17.39 -127.65 -2.22 -42.14 16 17 C -0.58 -24.45 4.72 71.98 0.34 -24.11 16 18 C 0.02 1.26 4.98 29.85 0.15 1.41 16 19 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 20 H 0.07 3.72 7.74 -2.91 -0.02 3.69 16 21 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 22 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 23 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 27 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.08 8.13 -2.38 -0.02 1.06 16 29 H 0.05 1.08 8.13 -2.38 -0.02 1.06 16 30 H 0.12 1.83 7.99 -2.39 -0.02 1.81 16 31 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.08 1.64 7.62 -2.39 -0.02 1.63 16 33 H 0.10 0.89 8.14 -2.39 -0.02 0.88 16 34 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.13 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.43 8.87 8.80 -96.74 -0.85 8.02 16 38 H 0.12 4.78 7.71 -2.39 -0.02 4.76 16 39 H 0.13 5.45 7.80 -2.39 -0.02 5.43 16 40 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.01 0.71 8.14 -2.39 -0.02 0.70 16 42 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -81.28 370.17 -1.54 -82.82 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.19 Total: 20.22 kcal Atomic # 6 Polarization: -36.24 SS G_CDS: 4.56 Total: -31.69 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -0.44 Total: -85.90 kcal Atomic # 8 Polarization: -120.80 SS G_CDS: -7.56 Total: -128.36 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 96.82 SS G_CDS: -0.31 Total: 96.51 kcal Total: -81.28 -1.54 -82.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196245931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.579 kcal (2) G-P(sol) polarization free energy of solvation -81.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -275.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -277.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds