Wall clock time and date at job start Tue Mar 31 2020 19:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00011 * 2 1 4 4 H 1.48497 * 109.47384 * 270.00041 * 3 2 1 5 5 H 1.48499 * 109.47240 * 30.00047 * 3 2 1 6 6 H 1.48499 * 109.46997 * 149.99897 * 3 2 1 7 7 C 1.37880 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99508 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00053 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.47276 * 179.97438 * 9 7 2 11 11 C 1.46504 * 119.99863 * 264.80666 * 10 9 7 12 12 C 1.53003 * 109.47012 * 274.54893 * 11 10 9 13 13 C 1.52996 * 117.49796 * 243.62307 * 12 11 10 14 14 C 1.52994 * 117.49802 * 175.00206 * 12 11 10 15 15 C 1.34776 * 120.00075 * 84.80135 * 10 9 7 16 16 O 1.21358 * 120.00227 * 174.64898 * 15 10 9 17 17 C 1.49369 * 120.00141 * 354.64901 * 15 10 9 18 18 O 1.21365 * 119.99781 * 354.42796 * 17 15 10 19 19 N 1.34772 * 120.00396 * 174.41613 * 17 15 10 20 20 C 1.39396 * 120.00343 * 185.03116 * 19 17 15 21 21 C 1.39492 * 120.85961 * 34.78544 * 20 19 17 22 22 C 1.37884 * 119.10192 * 180.25510 * 21 20 19 23 23 N 1.32000 * 120.86130 * 359.76992 * 22 21 20 24 24 C 1.32040 * 121.88805 * 0.02562 * 23 22 21 25 25 Cl 1.73600 * 119.59965 * 179.97438 * 24 23 22 26 26 C 1.38145 * 120.80755 * 359.97438 * 24 23 22 27 27 H 0.96997 * 120.00221 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47538 * 59.99880 * 9 7 2 29 29 H 1.09004 * 109.47191 * 299.99753 * 9 7 2 30 30 H 1.08993 * 109.47316 * 34.54970 * 11 10 9 31 31 H 1.09004 * 109.46613 * 154.54813 * 11 10 9 32 32 H 1.08997 * 115.54757 * 29.33234 * 12 11 10 33 33 H 1.09001 * 117.49911 * 359.97438 * 13 12 11 34 34 H 1.09005 * 117.50012 * 145.01619 * 13 12 11 35 35 H 1.08998 * 117.49850 * 214.97699 * 14 12 11 36 36 H 1.09000 * 117.49719 * 359.97438 * 14 12 11 37 37 H 0.97002 * 119.99783 * 5.03727 * 19 17 15 38 38 H 1.08006 * 120.44822 * 0.02562 * 21 20 19 39 39 H 1.08006 * 119.57139 * 179.79332 * 22 21 20 40 40 H 1.07996 * 120.47004 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5753 -0.0001 11 6 4.3519 -3.2279 1.2635 12 6 5.7965 -2.8825 1.6308 13 6 6.8048 -4.0317 1.6885 14 6 6.3188 -3.3747 2.9819 15 6 4.1253 -3.2456 -1.1626 16 8 4.6204 -4.3536 -1.1738 17 6 3.6549 -2.6249 -2.4371 18 8 3.0690 -1.5623 -2.4145 19 7 3.8814 -3.2446 -3.6123 20 6 3.5368 -2.6177 -4.8087 21 6 3.6495 -1.2346 -4.9500 22 6 3.2936 -0.6516 -6.1478 23 7 2.8555 -1.3851 -7.1541 24 6 2.7383 -2.6971 -7.0618 25 17 2.1549 -3.6037 -8.4224 26 6 3.0743 -3.3571 -5.8956 27 1 -0.4850 0.8400 0.0004 28 1 3.8746 -0.6808 0.8905 29 1 3.8752 -0.6796 -0.8895 30 1 3.6836 -2.8795 2.0509 31 1 4.2529 -4.3079 1.1544 32 1 6.1538 -1.9163 1.2747 33 1 6.4390 -5.0339 1.4652 34 1 7.8259 -3.8218 1.3701 35 1 7.0203 -2.7326 3.5146 36 1 5.6332 -3.9443 3.6093 37 1 4.2840 -4.1270 -3.6256 38 1 4.0071 -0.6280 -4.1310 39 1 3.3746 0.4190 -6.2644 40 1 2.9759 -4.4303 -5.8260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262704383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:10 Heat of formation + Delta-G solvation = 11.581179 kcal Electronic energy + Delta-G solvation = -26667.031287 eV Core-core repulsion = 22702.811248 eV Total energy + Delta-G solvation = -3964.220039 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.05263 -39.90688 -38.39438 -37.11117 -36.73560 -35.78149 -34.54548 -32.43589 -31.17561 -30.95384 -28.59880 -27.28398 -24.78278 -23.79163 -22.86070 -22.32753 -22.02474 -20.61223 -19.58366 -18.25559 -17.36055 -17.04293 -16.58372 -16.42509 -16.03377 -15.43449 -15.29293 -14.91845 -14.65295 -14.56022 -14.22386 -14.09295 -13.91026 -13.58209 -13.18779 -12.62881 -12.27625 -12.26904 -12.03546 -11.82561 -11.66395 -11.44000 -11.42310 -11.14366 -10.94514 -10.79305 -10.57788 -10.47450 -10.21067 -9.84638 -9.82044 -9.59645 -9.15529 -8.93028 -8.73931 -8.58828 -8.08320 -6.12870 -4.10773 0.88049 0.92311 1.66324 1.90340 2.54769 3.24129 3.28642 3.31737 3.46724 3.68115 3.70270 3.96249 4.34983 4.41574 4.61908 4.80938 4.85763 4.86611 5.02991 5.09765 5.12237 5.20646 5.35899 5.50771 5.54419 5.68385 5.80616 5.89452 5.94441 5.97798 6.11623 6.18322 6.24122 6.41412 6.52387 6.72407 6.94396 7.16469 7.47527 7.66376 7.71948 7.97384 8.32119 8.45225 8.87027 9.46555 11.00551 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.003818 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.716887 B = 7332.532929 C = 9252.193387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.081 3.919 3 Si 0.873 3.127 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.072 0.928 9 C 0.202 3.798 10 N -0.550 5.550 11 C 0.146 3.854 12 C -0.165 4.165 13 C -0.174 4.174 14 C -0.177 4.177 15 C 0.513 3.487 16 O -0.548 6.548 17 C 0.491 3.509 18 O -0.424 6.424 19 N -0.659 5.659 20 C 0.220 3.780 21 C -0.172 4.172 22 C 0.139 3.861 23 N -0.495 5.495 24 C 0.194 3.806 25 Cl -0.035 7.035 26 C -0.187 4.187 27 H 0.264 0.736 28 H 0.033 0.967 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.422 0.578 38 H 0.153 0.847 39 H 0.170 0.830 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.523 -5.974 -6.301 14.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.122 4.122 3 Si 0.700 3.300 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.090 0.910 9 C 0.082 3.918 10 N -0.280 5.280 11 C 0.024 3.976 12 C -0.185 4.185 13 C -0.211 4.211 14 C -0.214 4.214 15 C 0.295 3.705 16 O -0.428 6.428 17 C 0.272 3.728 18 O -0.290 6.290 19 N -0.308 5.308 20 C 0.116 3.884 21 C -0.195 4.195 22 C -0.017 4.017 23 N -0.208 5.208 24 C 0.029 3.971 25 Cl -0.006 7.006 26 C -0.211 4.211 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.260 0.740 38 H 0.171 0.829 39 H 0.187 0.813 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.899 -5.268 -7.027 13.997 hybrid contribution 0.511 0.090 0.642 0.826 sum 11.410 -5.178 -6.384 14.063 Atomic orbital electron populations 1.69878 1.06221 1.26970 1.50250 1.24725 0.94578 0.98677 0.94200 0.86914 0.80172 0.84128 0.78791 1.19827 1.21221 1.19197 1.21037 0.88256 0.94776 1.51321 0.90960 1.20260 0.96765 0.76569 0.98232 1.47848 1.59626 1.16116 1.04379 1.21092 0.92906 0.98231 0.85397 1.22733 0.95656 0.99173 1.00900 1.22988 0.99022 0.97864 1.01186 1.22924 1.03742 1.04086 0.90691 1.19562 0.80350 0.85619 0.84945 1.90680 1.45410 1.20007 1.86738 1.20533 0.81144 0.86389 0.84703 1.91009 1.32904 1.19501 1.85558 1.43217 1.62115 1.22409 1.03089 1.17773 0.92975 0.92221 0.85457 1.22291 1.02808 0.94163 1.00190 1.22526 0.92338 0.99925 0.86921 1.67015 1.15675 1.05371 1.32739 1.21220 0.97589 0.89859 0.88391 1.98397 1.86635 1.71314 1.44269 1.21513 1.04813 1.02050 0.92685 0.92558 0.94866 0.93312 0.89054 0.89900 0.87714 0.88552 0.89334 0.88965 0.88659 0.73980 0.82897 0.81320 0.83398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.96 55.43 0.77 -25.82 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.87 20.45 27.47 -169.99 -4.67 15.78 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -5.83 6.54 56.52 0.37 -5.46 16 7 C -0.52 -13.61 8.28 -34.44 -0.29 -13.90 16 8 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 9 C 0.20 4.40 3.84 -5.19 -0.02 4.38 16 10 N -0.55 -10.51 2.47 -175.59 -0.43 -10.95 16 11 C 0.15 2.37 5.68 -4.04 -0.02 2.34 16 12 C -0.17 -2.28 6.01 -90.62 -0.54 -2.82 16 13 C -0.17 -2.08 10.18 -26.74 -0.27 -2.35 16 14 C -0.18 -1.98 10.25 -26.74 -0.27 -2.25 16 15 C 0.51 9.58 7.68 -11.62 -0.09 9.49 16 16 O -0.55 -10.12 16.05 5.49 0.09 -10.03 16 17 C 0.49 8.90 7.45 -11.63 -0.09 8.82 16 18 O -0.42 -9.04 9.99 5.48 0.05 -8.98 16 19 N -0.66 -9.48 5.33 -10.14 -0.05 -9.54 16 20 C 0.22 3.12 6.29 -83.54 -0.53 2.59 16 21 C -0.17 -2.47 8.73 -39.24 -0.34 -2.82 16 22 C 0.14 1.84 11.17 -17.61 -0.20 1.64 16 23 N -0.49 -7.10 10.34 -10.45 -0.11 -7.20 16 24 C 0.19 2.61 7.27 -17.50 -0.13 2.49 16 25 Cl -0.03 -0.41 29.10 -51.86 -1.51 -1.92 16 26 C -0.19 -2.36 9.83 -39.20 -0.39 -2.74 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.03 0.71 7.09 -51.93 -0.37 0.34 16 29 H 0.05 1.08 5.36 -51.93 -0.28 0.80 16 30 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 31 H 0.08 1.32 7.10 -51.93 -0.37 0.95 16 32 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 33 H 0.10 1.18 8.03 -51.93 -0.42 0.76 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.42 5.06 8.30 -40.82 -0.34 4.72 16 38 H 0.15 2.29 6.63 -52.48 -0.35 1.95 16 39 H 0.17 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -31.17 359.24 -8.38 -39.55 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.67 Total: 6.71 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -3.27 Total: 6.99 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.18 Total: -53.51 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.14 Total: -19.01 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.78 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.51 Total: -1.92 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.17 -8.38 -39.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262704383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.129 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds