Wall clock time and date at job start Tue Mar 31 2020 19:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00011 * 2 1 4 4 H 1.48497 * 109.47384 * 270.00041 * 3 2 1 5 5 H 1.48499 * 109.47240 * 30.00047 * 3 2 1 6 6 H 1.48499 * 109.46997 * 149.99897 * 3 2 1 7 7 C 1.37880 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99508 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00053 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.47276 * 179.97438 * 9 7 2 11 11 C 1.46504 * 119.99863 * 264.80666 * 10 9 7 12 12 C 1.53003 * 109.47012 * 274.54893 * 11 10 9 13 13 C 1.52996 * 117.49796 * 243.62307 * 12 11 10 14 14 C 1.52994 * 117.49802 * 175.00206 * 12 11 10 15 15 C 1.34776 * 120.00075 * 84.80135 * 10 9 7 16 16 O 1.21358 * 120.00227 * 174.64898 * 15 10 9 17 17 C 1.49369 * 120.00141 * 354.64901 * 15 10 9 18 18 O 1.21365 * 119.99781 * 354.42796 * 17 15 10 19 19 N 1.34772 * 120.00396 * 174.41613 * 17 15 10 20 20 C 1.39396 * 120.00343 * 185.03116 * 19 17 15 21 21 C 1.39492 * 120.85961 * 34.78544 * 20 19 17 22 22 C 1.37884 * 119.10192 * 180.25510 * 21 20 19 23 23 N 1.32000 * 120.86130 * 359.76992 * 22 21 20 24 24 C 1.32040 * 121.88805 * 0.02562 * 23 22 21 25 25 Cl 1.73600 * 119.59965 * 179.97438 * 24 23 22 26 26 C 1.38145 * 120.80755 * 359.97438 * 24 23 22 27 27 H 0.96997 * 120.00221 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47538 * 59.99880 * 9 7 2 29 29 H 1.09004 * 109.47191 * 299.99753 * 9 7 2 30 30 H 1.08993 * 109.47316 * 34.54970 * 11 10 9 31 31 H 1.09004 * 109.46613 * 154.54813 * 11 10 9 32 32 H 1.08997 * 115.54757 * 29.33234 * 12 11 10 33 33 H 1.09001 * 117.49911 * 359.97438 * 13 12 11 34 34 H 1.09005 * 117.50012 * 145.01619 * 13 12 11 35 35 H 1.08998 * 117.49850 * 214.97699 * 14 12 11 36 36 H 1.09000 * 117.49719 * 359.97438 * 14 12 11 37 37 H 0.97002 * 119.99783 * 5.03727 * 19 17 15 38 38 H 1.08006 * 120.44822 * 0.02562 * 21 20 19 39 39 H 1.08006 * 119.57139 * 179.79332 * 22 21 20 40 40 H 1.07996 * 120.47004 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5753 -0.0001 11 6 4.3519 -3.2279 1.2635 12 6 5.7965 -2.8825 1.6308 13 6 6.8048 -4.0317 1.6885 14 6 6.3188 -3.3747 2.9819 15 6 4.1253 -3.2456 -1.1626 16 8 4.6204 -4.3536 -1.1738 17 6 3.6549 -2.6249 -2.4371 18 8 3.0690 -1.5623 -2.4145 19 7 3.8814 -3.2446 -3.6123 20 6 3.5368 -2.6177 -4.8087 21 6 3.6495 -1.2346 -4.9500 22 6 3.2936 -0.6516 -6.1478 23 7 2.8555 -1.3851 -7.1541 24 6 2.7383 -2.6971 -7.0618 25 17 2.1549 -3.6037 -8.4224 26 6 3.0743 -3.3571 -5.8956 27 1 -0.4850 0.8400 0.0004 28 1 3.8746 -0.6808 0.8905 29 1 3.8752 -0.6796 -0.8895 30 1 3.6836 -2.8795 2.0509 31 1 4.2529 -4.3079 1.1544 32 1 6.1538 -1.9163 1.2747 33 1 6.4390 -5.0339 1.4652 34 1 7.8259 -3.8218 1.3701 35 1 7.0203 -2.7326 3.5146 36 1 5.6332 -3.9443 3.6093 37 1 4.2840 -4.1270 -3.6256 38 1 4.0071 -0.6280 -4.1310 39 1 3.3746 0.4190 -6.2644 40 1 2.9759 -4.4303 -5.8260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262704383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:09 Heat of formation + Delta-G solvation = -8.242665 kcal Electronic energy + Delta-G solvation = -26667.890914 eV Core-core repulsion = 22702.811248 eV Total energy + Delta-G solvation = -3965.079666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.35699 -41.16065 -39.72188 -38.31056 -37.75919 -37.10069 -35.97365 -34.43026 -32.26660 -32.08987 -30.31873 -28.75086 -26.10555 -24.86643 -24.57985 -23.44226 -23.12499 -21.78657 -20.90512 -19.48512 -19.09134 -18.72218 -17.93967 -17.65665 -17.15775 -16.79001 -16.70140 -16.16298 -15.91144 -15.86562 -15.63743 -15.28318 -15.08111 -14.95193 -14.51952 -14.48906 -13.93597 -13.49584 -13.38868 -13.13885 -12.85300 -12.70612 -12.50089 -12.39330 -12.33793 -12.24069 -12.05439 -12.04616 -11.69366 -11.31424 -10.97130 -10.85117 -10.73213 -10.39936 -10.12888 -9.92682 -9.64728 -8.23595 -6.25288 -0.26353 -0.16417 0.49264 0.64656 1.23487 1.39416 1.42097 1.48719 2.08619 2.36157 2.38961 2.55949 2.94759 3.14102 3.23451 3.43284 3.73327 3.81227 3.82669 3.97477 4.02310 4.12093 4.34242 4.34671 4.49645 4.55317 4.70775 4.73158 4.80272 4.83574 4.89576 5.05106 5.06397 5.25426 5.30842 5.38869 5.45850 5.50463 5.89587 6.07948 6.34747 6.60118 6.62650 6.71160 6.92269 7.36192 8.93606 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.003818 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.716887 B = 7332.532929 C = 9252.193387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.021 3.979 3 Si 0.936 3.064 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.236 1.236 7 C -0.505 4.505 8 H 0.025 0.975 9 C 0.215 3.785 10 N -0.557 5.557 11 C 0.144 3.856 12 C -0.185 4.185 13 C -0.169 4.169 14 C -0.157 4.157 15 C 0.510 3.490 16 O -0.546 6.546 17 C 0.494 3.506 18 O -0.464 6.464 19 N -0.641 5.641 20 C 0.203 3.797 21 C -0.182 4.182 22 C 0.139 3.861 23 N -0.508 5.508 24 C 0.183 3.817 25 Cl -0.020 7.020 26 C -0.177 4.177 27 H 0.264 0.736 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.434 0.566 38 H 0.145 0.855 39 H 0.195 0.805 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.774 -5.995 -6.442 16.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.159 1.159 7 C -0.544 4.544 8 H 0.043 0.957 9 C 0.094 3.906 10 N -0.286 5.286 11 C 0.023 3.977 12 C -0.204 4.204 13 C -0.206 4.206 14 C -0.195 4.195 15 C 0.292 3.708 16 O -0.426 6.426 17 C 0.276 3.724 18 O -0.333 6.333 19 N -0.290 5.290 20 C 0.099 3.901 21 C -0.205 4.205 22 C -0.017 4.017 23 N -0.222 5.222 24 C 0.019 3.981 25 Cl 0.009 6.991 26 C -0.200 4.200 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.274 0.726 38 H 0.163 0.837 39 H 0.212 0.788 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 13.200 -5.356 -7.184 15.954 hybrid contribution -0.218 -0.079 0.595 0.638 sum 12.982 -5.435 -6.589 15.540 Atomic orbital electron populations 1.70047 1.08329 1.27852 1.52838 1.25599 0.95263 1.02735 0.94053 0.85893 0.79989 0.79052 0.79101 1.19593 1.21351 1.15939 1.21177 0.90645 0.92758 1.49770 0.95686 1.19948 0.93554 0.78375 0.98772 1.47855 1.59749 1.15433 1.05601 1.21220 0.94665 0.97862 0.84001 1.22583 0.94316 0.99753 1.03730 1.23035 0.98994 0.96905 1.01668 1.23040 1.03265 1.03270 0.89878 1.19707 0.80245 0.85645 0.85177 1.90670 1.45353 1.19761 1.86826 1.20505 0.80574 0.85951 0.85400 1.90991 1.35039 1.21134 1.86106 1.42989 1.61189 1.22543 1.02321 1.17935 0.94059 0.92517 0.85576 1.22355 1.03252 0.94387 1.00472 1.22918 0.91441 1.01095 0.86199 1.67085 1.15971 1.05944 1.33171 1.21474 0.97595 0.89924 0.89156 1.98401 1.86399 1.70851 1.43462 1.21701 1.03403 1.03195 0.91696 0.92740 0.93506 0.92908 0.89666 0.89998 0.88167 0.88963 0.88115 0.87187 0.87864 0.72551 0.83737 0.78790 0.80911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.38 13.96 21.45 0.30 -58.08 16 2 C 0.02 1.18 5.47 84.66 0.46 1.64 16 3 Si 0.94 41.97 27.47 68.60 1.88 43.86 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.24 -9.32 6.54 99.48 0.65 -8.67 16 7 C -0.50 -27.31 8.28 25.60 0.21 -27.10 16 8 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 9 C 0.21 9.28 3.84 85.63 0.33 9.61 16 10 N -0.56 -21.17 2.47 -827.81 -2.04 -23.21 16 11 C 0.14 4.58 5.68 86.38 0.49 5.07 16 12 C -0.18 -4.77 6.01 -10.80 -0.06 -4.83 16 13 C -0.17 -3.66 10.18 30.59 0.31 -3.35 16 14 C -0.16 -3.08 10.25 30.59 0.31 -2.77 16 15 C 0.51 18.89 7.68 87.24 0.67 19.56 16 16 O -0.55 -19.67 16.05 -3.27 -0.05 -19.72 16 17 C 0.49 17.90 7.45 87.24 0.65 18.55 16 18 O -0.46 -20.01 9.99 -3.29 -0.03 -20.04 16 19 N -0.64 -17.96 5.33 -304.34 -1.62 -19.58 16 20 C 0.20 5.57 6.29 38.51 0.24 5.82 16 21 C -0.18 -5.15 8.73 22.49 0.20 -4.95 16 22 C 0.14 3.54 11.17 84.58 0.94 4.49 16 23 N -0.51 -13.95 10.34 -186.96 -1.93 -15.88 16 24 C 0.18 4.67 7.27 84.64 0.62 5.28 16 25 Cl -0.02 -0.43 29.10 -2.72 -0.08 -0.51 16 26 C -0.18 -4.20 9.83 22.52 0.22 -3.97 16 27 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 28 H 0.05 1.91 7.09 -2.39 -0.02 1.90 16 29 H 0.05 2.30 5.36 -2.38 -0.01 2.29 16 30 H 0.09 2.75 8.11 -2.39 -0.02 2.73 16 31 H 0.08 2.57 7.10 -2.38 -0.02 2.56 16 32 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.09 2.08 8.03 -2.39 -0.02 2.06 16 34 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.43 9.83 8.30 -92.71 -0.77 9.06 16 38 H 0.14 4.34 6.63 -2.91 -0.02 4.32 16 39 H 0.20 3.71 8.06 -2.91 -0.02 3.69 16 40 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -68.56 359.24 2.28 -66.28 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.27 Total: 23.86 kcal Atomic # 6 Polarization: 17.45 SS G_CDS: 5.59 Total: 23.04 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -5.30 Total: -116.76 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.09 Total: -39.76 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.88 Total: 43.86 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -68.56 2.28 -66.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262704383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.035 kcal (2) G-P(sol) polarization free energy of solvation -68.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds