Wall clock time and date at job start Tue Mar 31 2020 19:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99879 * 2 1 4 4 H 1.48502 * 109.47055 * 239.99766 * 3 2 1 5 5 H 1.48495 * 109.47400 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47129 * 119.99955 * 3 2 1 7 7 C 1.37877 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00125 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47154 * 179.97438 * 9 7 2 11 11 C 1.42905 * 114.00200 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47160 * 180.02562 * 11 10 9 13 13 O 1.42896 * 109.47250 * 64.99974 * 12 11 10 14 14 C 1.42895 * 114.00173 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47369 * 180.02562 * 14 13 12 16 16 O 1.45196 * 109.47146 * 65.00175 * 15 14 13 17 17 C 1.34233 * 117.00299 * 180.02562 * 16 15 14 18 18 O 1.20822 * 119.99499 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00195 * 179.97438 * 17 16 15 20 20 H 1.09000 * 108.43477 * 316.45778 * 19 17 16 21 21 C 1.53195 * 108.64545 * 74.37653 * 19 17 16 22 22 C 1.55560 * 106.24195 * 148.65708 * 21 19 17 23 23 S 1.84113 * 99.54594 * 322.85421 * 22 21 19 24 24 O 1.42100 * 111.54050 * 284.41480 * 23 22 21 25 25 O 1.42095 * 111.44682 * 144.29821 * 23 22 21 26 26 N 1.46453 * 108.64694 * 198.54735 * 19 17 16 27 27 H 0.97001 * 119.99945 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47452 * 59.99920 * 9 7 2 29 29 H 1.08994 * 109.47555 * 299.99961 * 9 7 2 30 30 H 1.09006 * 109.46839 * 60.00136 * 11 10 9 31 31 H 1.09001 * 109.47209 * 300.00366 * 11 10 9 32 32 H 1.08997 * 109.47344 * 305.00075 * 12 11 10 33 33 H 1.08998 * 109.47037 * 185.00356 * 12 11 10 34 34 H 1.09006 * 109.47023 * 60.00341 * 14 13 12 35 35 H 1.09004 * 109.47255 * 300.00214 * 14 13 12 36 36 H 1.09007 * 109.46689 * 305.00254 * 15 14 13 37 37 H 1.08995 * 109.47165 * 185.00158 * 15 14 13 38 38 H 1.09005 * 110.10086 * 267.85488 * 21 19 17 39 39 H 1.08999 * 110.10329 * 29.40431 * 21 19 17 40 40 H 1.09000 * 111.36598 * 80.61339 * 22 21 19 41 41 H 1.09000 * 111.37197 * 205.40324 * 22 21 19 42 42 H 0.97001 * 126.08188 * 57.13105 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 8 2.1796 -3.5853 -0.0027 11 6 1.5650 -4.8755 -0.0032 12 6 2.6480 -5.9562 -0.0036 13 8 3.3873 -5.8902 1.2175 14 6 4.4289 -6.8631 1.3196 15 6 5.1490 -6.7006 2.6598 16 8 4.2310 -7.0055 3.7426 17 6 4.7100 -6.9094 4.9929 18 8 5.8581 -6.5809 5.1763 19 6 3.8153 -7.2102 6.1677 20 1 2.8462 -6.7437 5.9912 21 6 3.6197 -8.7268 6.2587 22 6 3.4430 -9.0529 7.7694 23 16 4.6367 -7.8468 8.4837 24 8 5.9801 -8.2734 8.3038 25 8 4.1712 -7.3257 9.7210 26 7 4.4071 -6.6197 7.3702 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5563 -0.8920 29 1 0.6240 -2.5575 0.8879 30 1 0.9446 -4.9819 -0.8932 31 1 0.9451 -4.9831 0.8869 32 1 3.3216 -5.7954 -0.8453 33 1 2.1820 -6.9375 -0.0937 34 1 5.1395 -6.7214 0.5053 35 1 3.9995 -7.8631 1.2573 36 1 5.5016 -5.6740 2.7605 37 1 5.9985 -7.3822 2.7008 38 1 2.7290 -9.0236 5.7047 39 1 4.4952 -9.2419 5.8634 40 1 2.4245 -8.8532 8.1023 41 1 3.7367 -10.0788 7.9914 42 1 4.6303 -5.6842 7.4968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263521996.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:20 Heat of formation + Delta-G solvation = -235.908304 kcal Electronic energy + Delta-G solvation = -26727.410620 eV Core-core repulsion = 22414.900667 eV Total energy + Delta-G solvation = -4312.509953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.117 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.94725 -38.33671 -37.71733 -37.34169 -36.55043 -36.30296 -36.14262 -32.76399 -32.40485 -31.22118 -29.12321 -27.86017 -26.75724 -23.81157 -22.71404 -22.42822 -21.95122 -21.24344 -20.12857 -18.47826 -18.29292 -17.27289 -17.10269 -16.86062 -16.43515 -16.27223 -16.10535 -15.96326 -15.29794 -14.95653 -14.76790 -14.51989 -14.23148 -14.14061 -14.01647 -13.70759 -13.32348 -12.97095 -12.69308 -12.56926 -12.48821 -12.41370 -12.17102 -11.98136 -11.79353 -11.65935 -11.21720 -11.12170 -10.95768 -10.87350 -10.84038 -10.77905 -10.52253 -10.01773 -10.01612 -9.55169 -9.11391 -8.83352 -8.17657 -6.10759 -4.12218 -0.29153 1.77370 1.94639 2.38802 3.06013 3.23130 3.32818 3.35290 3.39475 3.60597 3.65622 3.87427 4.12905 4.34622 4.35647 4.54970 4.69847 4.74302 4.83021 4.85432 4.93792 5.01103 5.11640 5.15219 5.25694 5.29080 5.36727 5.50718 5.56431 5.97271 5.98223 6.15205 6.18975 6.52089 7.08410 7.26707 7.42625 7.45161 7.79710 8.15257 8.57489 9.00812 9.52500 11.00827 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013037 B = 0.002157 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.219876 B =12974.928326 C =14115.298271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.390 6.390 11 C 0.063 3.937 12 C 0.068 3.932 13 O -0.368 6.368 14 C 0.061 3.939 15 C 0.070 3.930 16 O -0.344 6.344 17 C 0.446 3.554 18 O -0.486 6.486 19 C 0.126 3.874 20 H 0.128 0.872 21 C -0.116 4.116 22 C -0.588 4.588 23 S 2.570 3.430 24 O -0.941 6.941 25 O -0.951 6.951 26 N -1.078 6.078 27 H 0.264 0.736 28 H 0.004 0.996 29 H 0.006 0.994 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.130 0.870 39 H 0.101 0.899 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 -24.262 11.858 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.309 6.309 11 C -0.015 4.015 12 C -0.008 4.008 13 O -0.287 6.287 14 C -0.016 4.016 15 C -0.004 4.004 16 O -0.260 6.260 17 C 0.285 3.715 18 O -0.372 6.372 19 C 0.015 3.985 20 H 0.145 0.855 21 C -0.155 4.155 22 C -0.718 4.718 23 S 2.663 3.337 24 O -0.930 6.930 25 O -0.941 6.941 26 N -0.844 5.844 27 H 0.074 0.926 28 H 0.022 0.978 29 H 0.023 0.977 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.148 0.852 39 H 0.120 0.880 40 H 0.168 0.832 41 H 0.165 0.835 42 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 6.229 -23.940 12.830 27.866 hybrid contribution -0.140 1.045 -0.881 1.374 sum 6.089 -22.895 11.949 26.534 Atomic orbital electron populations 1.69951 1.06100 1.27266 1.50567 1.24948 0.94989 0.99433 0.95147 0.86387 0.79307 0.81861 0.78865 1.20023 1.21150 1.19990 1.21019 0.94044 0.89374 1.50827 0.91617 1.20199 0.88764 0.83622 0.95333 1.87912 1.35211 1.12661 1.95165 1.22256 0.93684 0.85647 0.99871 1.22595 0.94065 0.97373 0.86759 1.88096 1.47081 1.54898 1.38660 1.22504 0.91361 0.93096 0.94597 1.23202 0.90936 1.03011 0.83227 1.86532 1.44702 1.79829 1.14914 1.23903 0.87855 0.75053 0.84717 1.90727 1.18705 1.41854 1.85908 1.20773 0.97970 0.96189 0.83543 0.85469 1.22363 1.07557 0.90419 0.95172 1.30825 1.18046 1.17078 1.05872 1.06554 0.76482 0.76823 0.73806 1.93694 1.32032 1.81665 1.85641 1.93644 1.82326 1.76697 1.41384 1.54913 1.80315 1.23216 1.26000 0.92603 0.97779 0.97653 0.92934 0.93615 0.92671 0.92658 0.90905 0.92434 0.89717 0.89638 0.85198 0.88032 0.83220 0.83483 0.71642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -15.36 9.43 -34.44 -0.32 -15.68 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.20 5.41 5.69 36.00 0.20 5.61 16 10 O -0.39 -9.57 10.29 -40.08 -0.41 -9.98 16 11 C 0.06 1.15 6.32 37.16 0.23 1.39 16 12 C 0.07 0.98 6.32 37.16 0.23 1.22 16 13 O -0.37 -5.75 10.28 -48.78 -0.50 -6.25 16 14 C 0.06 0.66 6.33 37.16 0.24 0.89 16 15 C 0.07 0.76 5.84 37.16 0.22 0.98 16 16 O -0.34 -3.84 10.19 -42.03 -0.43 -4.27 16 17 C 0.45 4.83 6.96 36.00 0.25 5.08 16 18 O -0.49 -6.85 16.24 -18.75 -0.30 -7.15 16 19 C 0.13 0.86 3.66 -69.01 -0.25 0.61 16 20 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 21 C -0.12 -0.43 6.06 -25.27 -0.15 -0.58 16 22 C -0.59 -1.57 7.67 38.52 0.30 -1.28 16 23 S 2.57 19.30 6.48 -107.50 -0.70 18.60 16 24 O -0.94 -10.96 18.14 -57.37 -1.04 -12.00 16 25 O -0.95 -10.19 18.14 -57.37 -1.04 -11.23 16 26 N -1.08 -8.35 6.11 -5.82 -0.04 -8.38 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 1.07 8.13 -51.92 -0.42 0.65 16 37 H 0.09 0.74 8.13 -51.93 -0.42 0.32 16 38 H 0.13 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.10 0.38 7.82 -51.93 -0.41 -0.02 16 40 H 0.15 0.12 8.14 -51.93 -0.42 -0.30 16 41 H 0.15 0.08 8.14 -51.93 -0.42 -0.34 16 42 H 0.44 3.30 8.96 -40.36 -0.36 2.94 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -41.74 376.64 -8.45 -50.20 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -6.23 Total: -5.72 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 0.85 Total: -0.23 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.70 Total: -34.67 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -3.73 Total: -50.88 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 19.30 SS G_CDS: -0.70 Total: 18.60 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -41.74 -8.45 -50.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263521996.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.711 kcal (2) G-P(sol) polarization free energy of solvation -41.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds