Wall clock time and date at job start Tue Mar 31 2020 19:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99879 * 2 1 4 4 H 1.48502 * 109.47055 * 239.99766 * 3 2 1 5 5 H 1.48495 * 109.47400 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47129 * 119.99955 * 3 2 1 7 7 C 1.37877 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00125 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47154 * 179.97438 * 9 7 2 11 11 C 1.42905 * 114.00200 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47160 * 180.02562 * 11 10 9 13 13 O 1.42896 * 109.47250 * 64.99974 * 12 11 10 14 14 C 1.42895 * 114.00173 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47369 * 180.02562 * 14 13 12 16 16 O 1.45196 * 109.47146 * 65.00175 * 15 14 13 17 17 C 1.34233 * 117.00299 * 180.02562 * 16 15 14 18 18 O 1.20822 * 119.99499 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00195 * 179.97438 * 17 16 15 20 20 H 1.09000 * 108.43477 * 316.45778 * 19 17 16 21 21 C 1.53195 * 108.64545 * 74.37653 * 19 17 16 22 22 C 1.55560 * 106.24195 * 148.65708 * 21 19 17 23 23 S 1.84113 * 99.54594 * 322.85421 * 22 21 19 24 24 O 1.42100 * 111.54050 * 284.41480 * 23 22 21 25 25 O 1.42095 * 111.44682 * 144.29821 * 23 22 21 26 26 N 1.46453 * 108.64694 * 198.54735 * 19 17 16 27 27 H 0.97001 * 119.99945 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47452 * 59.99920 * 9 7 2 29 29 H 1.08994 * 109.47555 * 299.99961 * 9 7 2 30 30 H 1.09006 * 109.46839 * 60.00136 * 11 10 9 31 31 H 1.09001 * 109.47209 * 300.00366 * 11 10 9 32 32 H 1.08997 * 109.47344 * 305.00075 * 12 11 10 33 33 H 1.08998 * 109.47037 * 185.00356 * 12 11 10 34 34 H 1.09006 * 109.47023 * 60.00341 * 14 13 12 35 35 H 1.09004 * 109.47255 * 300.00214 * 14 13 12 36 36 H 1.09007 * 109.46689 * 305.00254 * 15 14 13 37 37 H 1.08995 * 109.47165 * 185.00158 * 15 14 13 38 38 H 1.09005 * 110.10086 * 267.85488 * 21 19 17 39 39 H 1.08999 * 110.10329 * 29.40431 * 21 19 17 40 40 H 1.09000 * 111.36598 * 80.61339 * 22 21 19 41 41 H 1.09000 * 111.37197 * 205.40324 * 22 21 19 42 42 H 0.97001 * 126.08188 * 57.13105 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 8 2.1796 -3.5853 -0.0027 11 6 1.5650 -4.8755 -0.0032 12 6 2.6480 -5.9562 -0.0036 13 8 3.3873 -5.8902 1.2175 14 6 4.4289 -6.8631 1.3196 15 6 5.1490 -6.7006 2.6598 16 8 4.2310 -7.0055 3.7426 17 6 4.7100 -6.9094 4.9929 18 8 5.8581 -6.5809 5.1763 19 6 3.8153 -7.2102 6.1677 20 1 2.8462 -6.7437 5.9912 21 6 3.6197 -8.7268 6.2587 22 6 3.4430 -9.0529 7.7694 23 16 4.6367 -7.8468 8.4837 24 8 5.9801 -8.2734 8.3038 25 8 4.1712 -7.3257 9.7210 26 7 4.4071 -6.6197 7.3702 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5563 -0.8920 29 1 0.6240 -2.5575 0.8879 30 1 0.9446 -4.9819 -0.8932 31 1 0.9451 -4.9831 0.8869 32 1 3.3216 -5.7954 -0.8453 33 1 2.1820 -6.9375 -0.0937 34 1 5.1395 -6.7214 0.5053 35 1 3.9995 -7.8631 1.2573 36 1 5.5016 -5.6740 2.7605 37 1 5.9985 -7.3822 2.7008 38 1 2.7290 -9.0236 5.7047 39 1 4.4952 -9.2419 5.8634 40 1 2.4245 -8.8532 8.1023 41 1 3.7367 -10.0788 7.9914 42 1 4.6303 -5.6842 7.4968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263521996.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:19 Heat of formation + Delta-G solvation = -271.308255 kcal Electronic energy + Delta-G solvation = -26728.945677 eV Core-core repulsion = 22414.900667 eV Total energy + Delta-G solvation = -4314.045010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.117 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.76989 -39.39462 -38.56597 -38.17998 -37.82384 -37.19904 -36.96537 -34.94618 -32.84453 -32.29175 -30.47051 -28.86584 -28.36166 -24.54798 -24.38702 -23.40361 -23.34502 -21.98671 -20.69326 -19.19394 -18.94240 -18.66728 -18.23370 -17.71478 -17.67676 -17.53261 -17.17282 -16.70588 -16.64468 -16.07377 -16.05546 -15.75321 -15.72149 -14.88865 -14.74823 -14.44969 -14.22140 -14.13782 -13.70101 -13.45031 -13.34087 -13.29854 -13.14638 -13.13466 -12.98827 -12.74720 -12.70375 -12.45476 -12.41542 -12.22297 -11.89079 -11.79454 -11.62287 -11.50010 -11.31249 -10.88568 -10.67108 -10.51709 -10.23291 -8.33431 -6.45584 -0.80325 1.00228 1.31870 1.38568 1.43178 1.51608 1.71129 2.33633 2.57649 2.67899 2.78601 3.00145 3.20913 3.21557 3.42079 3.57693 3.87934 3.93988 4.09083 4.15713 4.21359 4.26329 4.33149 4.36444 4.53326 4.61740 4.62437 4.65049 4.71996 4.78825 4.80486 4.91168 4.92029 5.17899 5.32899 5.53315 5.89600 5.95342 6.28408 6.53860 6.61912 6.82188 7.26335 8.78667 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013037 B = 0.002157 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.219876 B =12974.928326 C =14115.298271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.551 4.551 8 H 0.058 0.942 9 C 0.209 3.791 10 O -0.409 6.409 11 C 0.048 3.952 12 C 0.075 3.925 13 O -0.408 6.408 14 C 0.060 3.940 15 C 0.064 3.936 16 O -0.345 6.345 17 C 0.442 3.558 18 O -0.530 6.530 19 C 0.122 3.878 20 H 0.152 0.848 21 C -0.117 4.117 22 C -0.537 4.537 23 S 2.553 3.447 24 O -0.997 6.997 25 O -0.993 6.993 26 N -1.086 6.086 27 H 0.272 0.728 28 H -0.009 1.009 29 H -0.016 1.016 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.169 0.831 39 H 0.101 0.899 40 H 0.183 0.817 41 H 0.181 0.819 42 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.197 -26.062 11.143 28.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.589 4.589 8 H 0.076 0.924 9 C 0.134 3.866 10 O -0.329 6.329 11 C -0.029 4.029 12 C -0.001 4.001 13 O -0.328 6.328 14 C -0.015 4.015 15 C -0.009 4.009 16 O -0.261 6.261 17 C 0.283 3.717 18 O -0.418 6.418 19 C 0.011 3.989 20 H 0.170 0.830 21 C -0.156 4.156 22 C -0.672 4.672 23 S 2.653 3.347 24 O -0.986 6.986 25 O -0.983 6.983 26 N -0.850 5.850 27 H 0.080 0.920 28 H 0.009 0.991 29 H 0.002 0.998 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.187 0.813 39 H 0.120 0.880 40 H 0.201 0.799 41 H 0.198 0.802 42 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 5.203 -25.744 12.130 28.930 hybrid contribution 0.114 1.481 -0.705 1.644 sum 5.317 -24.263 11.425 27.340 Atomic orbital electron populations 1.70050 1.07648 1.28752 1.50353 1.25939 0.96000 1.03294 0.93889 0.85261 0.78157 0.76850 0.79308 1.18893 1.19714 1.19373 1.21363 0.93999 0.91077 1.52449 0.92363 1.19811 0.88578 0.84643 0.93539 1.87859 1.35430 1.14427 1.95230 1.22704 0.95732 0.83872 1.00568 1.22590 0.93276 0.97606 0.86597 1.88032 1.48535 1.57049 1.39174 1.22738 0.90745 0.93482 0.94581 1.23284 0.91884 1.01995 0.83769 1.86541 1.44756 1.79584 1.15171 1.24848 0.87866 0.73641 0.85339 1.90709 1.20766 1.43972 1.86355 1.21249 0.97532 0.98817 0.81257 0.83025 1.22604 1.09436 0.87607 0.95993 1.30654 1.16866 1.15919 1.03745 1.06830 0.76755 0.77695 0.73439 1.93623 1.36375 1.82442 1.86136 1.93583 1.82706 1.78267 1.43785 1.54962 1.80274 1.23149 1.26637 0.91955 0.99139 0.99814 0.91244 0.93871 0.92234 0.88081 0.89320 0.89288 0.92590 0.87476 0.81340 0.88042 0.79920 0.80153 0.72161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.98 45.00 29.54 68.60 2.03 47.03 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.55 -33.56 9.43 25.60 0.24 -33.32 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.21 11.95 5.69 71.23 0.41 12.35 16 10 O -0.41 -20.45 10.29 -144.34 -1.49 -21.94 16 11 C 0.05 1.73 6.32 71.98 0.45 2.18 16 12 C 0.08 1.99 6.32 71.98 0.45 2.44 16 13 O -0.41 -12.17 10.28 -136.02 -1.40 -13.57 16 14 C 0.06 1.16 6.33 71.98 0.46 1.62 16 15 C 0.06 1.37 5.84 71.98 0.42 1.79 16 16 O -0.35 -7.32 10.19 -48.80 -0.50 -7.82 16 17 C 0.44 9.43 6.96 71.24 0.50 9.93 16 18 O -0.53 -15.56 16.24 21.98 0.36 -15.21 16 19 C 0.12 1.47 3.66 44.32 0.16 1.64 16 20 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 21 C -0.12 -0.42 6.06 31.54 0.19 -0.23 16 22 C -0.54 -0.67 7.67 72.86 0.56 -0.11 16 23 S 2.55 38.39 6.48 -56.49 -0.37 38.03 16 24 O -1.00 -24.61 18.14 -127.81 -2.32 -26.92 16 25 O -0.99 -22.12 18.14 -127.81 -2.32 -24.44 16 26 N -1.09 -17.13 6.11 -172.33 -1.05 -18.18 16 27 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 28 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 30 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.49 8.13 -2.38 -0.02 1.47 16 37 H 0.11 1.76 8.13 -2.39 -0.02 1.74 16 38 H 0.17 -0.55 8.14 -2.38 -0.02 -0.56 16 39 H 0.10 0.45 7.82 -2.39 -0.02 0.43 16 40 H 0.18 -0.75 8.14 -2.39 -0.02 -0.77 16 41 H 0.18 -0.75 8.14 -2.39 -0.02 -0.77 16 42 H 0.44 7.26 8.96 -93.00 -0.83 6.43 16 Total: -1.00 -95.78 376.64 -2.26 -98.04 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: 0.20 Total: 1.63 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 4.30 Total: -0.81 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -0.77 Total: -74.02 kcal Atomic # 8 Polarization: -102.23 SS G_CDS: -7.66 Total: -109.89 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 38.39 SS G_CDS: -0.37 Total: 38.03 kcal Total: -95.78 -2.26 -98.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263521996.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.267 kcal (2) G-P(sol) polarization free energy of solvation -95.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds