Wall clock time and date at job start Tue Mar 31 2020 20:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 117.00263 * 2 1 4 4 O 1.20830 * 119.99829 * 359.97438 * 3 2 1 5 5 C 1.50690 * 120.00173 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47281 * 179.97438 * 5 3 2 7 7 C 1.36740 * 119.99857 * 269.99897 * 6 5 3 8 8 H 1.08005 * 120.00203 * 139.48354 * 7 6 5 9 9 C 1.39079 * 120.00423 * 319.48660 * 7 6 5 10 10 N 1.31350 * 120.00477 * 157.42476 * 9 7 6 11 11 Si 1.86807 * 119.99590 * 337.42703 * 9 7 6 12 12 H 1.48497 * 109.46817 * 95.24801 * 11 9 7 13 13 H 1.48499 * 109.46874 * 215.24886 * 11 9 7 14 14 H 1.48498 * 109.46883 * 335.25085 * 11 9 7 15 15 C 1.34775 * 120.00489 * 89.99676 * 6 5 3 16 16 O 1.21841 * 119.99498 * 4.64405 * 15 6 5 17 17 C 1.41404 * 120.00406 * 184.64549 * 15 6 5 18 18 C 1.35703 * 119.99989 * 176.20517 * 17 15 6 19 19 C 1.41670 * 119.99885 * 185.09152 * 18 17 15 20 20 C 1.36522 * 125.67844 * 184.94802 * 19 18 17 21 21 C 1.41725 * 106.58795 * 179.89025 * 20 19 18 22 22 C 1.47362 * 126.76454 * 180.10526 * 21 20 19 23 23 O 1.21511 * 120.00585 * 0.29765 * 22 21 20 24 24 O 1.34762 * 119.99744 * 180.29401 * 22 21 20 25 25 C 1.45194 * 116.99675 * 180.02562 * 24 22 21 26 26 C 1.37931 * 106.47070 * 0.37291 * 21 20 19 27 27 O 1.33608 * 108.39633 * 359.76825 * 26 21 20 28 28 H 1.09003 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47202 * 299.99815 * 1 2 3 30 30 H 1.09002 * 109.47225 * 59.99895 * 1 2 3 31 31 H 1.09001 * 109.47893 * 59.99761 * 5 3 2 32 32 H 1.08997 * 109.47645 * 299.99625 * 5 3 2 33 33 H 0.96997 * 120.00092 * 179.97438 * 10 9 7 34 34 H 1.08000 * 120.00407 * 355.92843 * 17 15 6 35 35 H 1.08000 * 119.99901 * 5.09314 * 18 17 15 36 36 H 1.08001 * 126.71079 * 0.02562 * 20 19 18 37 37 H 1.09006 * 109.47282 * 180.02562 * 25 24 22 38 38 H 1.09001 * 109.47310 * 299.99535 * 25 24 22 39 39 H 1.08993 * 109.47812 * 60.00061 * 25 24 22 40 40 H 1.08003 * 125.80843 * 179.80170 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.1751 3.3350 -1.1855 8 1 3.8436 4.3567 -1.2979 9 6 4.7988 2.6859 -2.2457 10 7 4.6049 3.1021 -3.4763 11 14 5.9122 1.2218 -1.9195 12 1 5.1365 -0.0346 -2.0766 13 1 7.0393 1.2320 -2.8864 14 1 6.4459 1.3044 -0.5362 15 6 4.1732 3.3263 1.1658 16 8 4.0835 2.7210 2.2194 17 6 4.4781 4.7071 1.1674 18 6 4.5949 5.3748 2.3429 19 6 4.7931 6.7776 2.3441 20 6 5.0197 7.5488 3.4476 21 6 5.1615 8.8818 2.9874 22 6 5.4212 10.0761 3.8106 23 8 5.5408 9.9696 5.0151 24 8 5.5261 11.2865 3.2275 25 6 5.7831 12.4183 4.1000 26 6 5.0024 8.8417 1.6179 27 8 4.7834 7.5745 1.2557 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7806 0.8891 33 1 5.0401 2.6496 -4.2157 34 1 4.6224 5.2293 0.2331 35 1 4.5367 4.8369 3.2776 36 1 5.0814 7.2093 4.4710 37 1 5.8441 13.3295 3.5047 38 1 4.9729 12.5109 4.8232 39 1 6.7247 12.2646 4.6269 40 1 5.0478 9.6904 0.9514 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265397805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:14 Heat of formation + Delta-G solvation = -146.150894 kcal Electronic energy + Delta-G solvation = -28121.761195 eV Core-core repulsion = 23677.699463 eV Total energy + Delta-G solvation = -4444.061731 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.73917 -40.28525 -40.11007 -38.93009 -36.58692 -36.05820 -35.06624 -33.82388 -33.24224 -32.20509 -29.89889 -28.73192 -27.80553 -26.63686 -25.24537 -24.09320 -23.32378 -21.23268 -20.93547 -20.09122 -19.04470 -17.78524 -17.35244 -17.27319 -17.10831 -16.68106 -16.67675 -16.05146 -16.00907 -15.89527 -15.57848 -15.32367 -14.39027 -14.20747 -13.99254 -13.52642 -13.48163 -13.29092 -13.06836 -12.98538 -12.82672 -12.64195 -12.38848 -12.15214 -11.91163 -11.71680 -11.56987 -11.04727 -11.03289 -10.81023 -10.66846 -10.45140 -10.39083 -10.20655 -10.00350 -9.91786 -9.49327 -8.93563 -8.13143 -7.79980 -6.69953 -4.28990 0.74949 1.16699 2.42779 2.57262 2.79995 2.86825 2.90643 2.98432 3.11198 3.12686 3.17758 3.92054 4.11080 4.22476 4.42441 4.71186 4.78192 4.84375 4.92182 4.92415 5.20841 5.33390 5.38003 5.40705 5.42037 5.58720 5.62470 5.70898 5.75501 5.79382 5.85629 6.08729 6.13343 6.27668 6.44635 6.78709 6.81122 7.00073 7.04768 7.58179 7.80992 8.03583 8.33276 8.69621 9.04164 9.37512 10.39181 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.015544 B = 0.002583 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.876596 B =10838.761673 C =11753.437067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.450 3.550 4 O -0.488 6.488 5 C 0.105 3.895 6 N -0.432 5.432 7 C -0.347 4.347 8 H 0.110 0.890 9 C 0.070 3.930 10 N -0.840 5.840 11 Si 0.860 3.140 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.253 1.253 15 C 0.512 3.488 16 O -0.595 6.595 17 C -0.119 4.119 18 C -0.068 4.068 19 C 0.037 3.963 20 C -0.142 4.142 21 C -0.228 4.228 22 C 0.540 3.460 23 O -0.507 6.507 24 O -0.359 6.359 25 C 0.038 3.962 26 C 0.051 3.949 27 O -0.148 6.148 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.280 0.720 34 H 0.142 0.858 35 H 0.157 0.843 36 H 0.164 0.836 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 8.235 6.887 10.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.291 3.709 4 O -0.373 6.373 5 C -0.020 4.020 6 N -0.151 5.151 7 C -0.474 4.474 8 H 0.128 0.872 9 C -0.140 4.140 10 N -0.473 5.473 11 Si 0.685 3.315 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.176 1.176 15 C 0.306 3.694 16 O -0.483 6.483 17 C -0.139 4.139 18 C -0.088 4.088 19 C -0.012 4.012 20 C -0.162 4.162 21 C -0.230 4.230 22 C 0.385 3.615 23 O -0.396 6.396 24 O -0.276 6.276 25 C -0.056 4.056 26 C -0.022 4.022 27 O -0.041 6.041 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.090 0.910 34 H 0.160 0.840 35 H 0.175 0.825 36 H 0.182 0.818 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 0.225 8.087 7.207 10.834 hybrid contribution 0.320 -0.383 -0.041 0.501 sum 0.545 7.704 7.166 10.535 Atomic orbital electron populations 1.23147 0.77423 1.02896 1.02301 1.86514 1.22748 1.34388 1.84915 1.24623 0.92705 0.81261 0.72350 1.90626 1.66571 1.36233 1.43861 1.21368 0.87045 0.88310 1.05317 1.43288 1.56600 1.08530 1.06696 1.19093 1.39798 1.00667 0.87845 0.87219 1.25431 0.96032 0.97977 0.94581 1.69749 1.38156 1.40843 0.98517 0.87138 0.81768 0.82193 0.80361 1.19411 1.20351 1.17648 1.16952 0.80721 0.88308 0.83397 1.90717 1.56998 1.69254 1.31297 1.22419 0.97141 0.95233 0.99150 1.20527 1.00799 0.87172 1.00331 1.19583 1.06472 0.91871 0.83234 1.21786 1.04305 0.90065 0.99999 1.19568 1.17414 0.92606 0.93459 1.20115 0.72852 0.82464 0.86033 1.90842 1.46824 1.86501 1.15398 1.86539 1.82776 1.16439 1.41806 1.23271 1.01848 0.85754 0.94686 1.25128 0.96883 0.85391 0.94784 1.84106 1.67483 1.17057 1.35467 0.88660 0.92310 0.92142 0.87470 0.86588 0.90987 0.84013 0.82517 0.81842 0.87929 0.91809 0.91794 0.76220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.37 -6.72 10.56 -39.26 -0.41 -7.13 16 3 C 0.45 9.74 8.02 36.00 0.29 10.03 16 4 O -0.49 -11.87 16.18 -18.75 -0.30 -12.18 16 5 C 0.10 2.27 4.85 -5.20 -0.03 2.25 16 6 N -0.43 -10.27 1.59 -119.42 -0.19 -10.46 16 7 C -0.35 -8.75 8.80 -15.05 -0.13 -8.88 16 8 H 0.11 2.92 6.93 -52.48 -0.36 2.55 16 9 C 0.07 1.74 5.28 -17.45 -0.09 1.65 16 10 N -0.84 -21.97 13.95 55.50 0.77 -21.20 16 11 Si 0.86 18.58 25.22 -169.99 -4.29 14.29 16 12 H -0.27 -5.47 6.68 56.52 0.38 -5.09 16 13 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 14 H -0.25 -5.48 7.11 56.52 0.40 -5.08 16 15 C 0.51 11.80 7.39 -15.06 -0.11 11.69 16 16 O -0.60 -14.38 15.67 5.06 0.08 -14.30 16 17 C -0.12 -2.39 8.72 -39.28 -0.34 -2.73 16 18 C -0.07 -1.15 9.37 -39.18 -0.37 -1.52 16 19 C 0.04 0.56 6.77 -38.89 -0.26 0.30 16 20 C -0.14 -1.99 10.64 -38.87 -0.41 -2.40 16 21 C -0.23 -2.97 6.16 -104.97 -0.65 -3.62 16 22 C 0.54 7.04 7.96 34.44 0.27 7.31 16 23 O -0.51 -7.83 16.73 -19.27 -0.32 -8.15 16 24 O -0.36 -3.77 10.41 -40.66 -0.42 -4.19 16 25 C 0.04 0.28 10.56 101.05 1.07 1.35 16 26 C 0.05 0.58 11.98 30.62 0.37 0.95 16 27 O -0.15 -2.16 10.12 5.89 0.06 -2.10 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 30 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 31 H 0.11 2.28 3.68 -51.93 -0.19 2.08 16 32 H 0.12 2.32 7.36 -51.93 -0.38 1.94 16 33 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.14 2.85 6.08 -52.49 -0.32 2.53 16 35 H 0.16 2.57 7.46 -52.49 -0.39 2.18 16 36 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.22 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 363.18 15.07 5.47 5.47 Total: -1.00 -32.62 363.18 -3.07 -35.70 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -4.19 Total: 6.29 kcal Atomic # 6 Polarization: 17.30 SS G_CDS: 0.67 Total: 17.97 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.58 Total: -31.66 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -1.32 Total: -48.06 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.29 Total: 14.29 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.62 -3.07 -35.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265397805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.453 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds