Wall clock time and date at job start Tue Mar 31 2020 20:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 117.00263 * 2 1 4 4 O 1.20830 * 119.99829 * 359.97438 * 3 2 1 5 5 C 1.50690 * 120.00173 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47281 * 179.97438 * 5 3 2 7 7 C 1.36740 * 119.99857 * 269.99897 * 6 5 3 8 8 H 1.08005 * 120.00203 * 139.48354 * 7 6 5 9 9 C 1.39079 * 120.00423 * 319.48660 * 7 6 5 10 10 N 1.31350 * 120.00477 * 157.42476 * 9 7 6 11 11 Si 1.86807 * 119.99590 * 337.42703 * 9 7 6 12 12 H 1.48497 * 109.46817 * 95.24801 * 11 9 7 13 13 H 1.48499 * 109.46874 * 215.24886 * 11 9 7 14 14 H 1.48498 * 109.46883 * 335.25085 * 11 9 7 15 15 C 1.34775 * 120.00489 * 89.99676 * 6 5 3 16 16 O 1.21841 * 119.99498 * 4.64405 * 15 6 5 17 17 C 1.41404 * 120.00406 * 184.64549 * 15 6 5 18 18 C 1.35703 * 119.99989 * 176.20517 * 17 15 6 19 19 C 1.41670 * 119.99885 * 185.09152 * 18 17 15 20 20 C 1.36522 * 125.67844 * 184.94802 * 19 18 17 21 21 C 1.41725 * 106.58795 * 179.89025 * 20 19 18 22 22 C 1.47362 * 126.76454 * 180.10526 * 21 20 19 23 23 O 1.21511 * 120.00585 * 0.29765 * 22 21 20 24 24 O 1.34762 * 119.99744 * 180.29401 * 22 21 20 25 25 C 1.45194 * 116.99675 * 180.02562 * 24 22 21 26 26 C 1.37931 * 106.47070 * 0.37291 * 21 20 19 27 27 O 1.33608 * 108.39633 * 359.76825 * 26 21 20 28 28 H 1.09003 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47202 * 299.99815 * 1 2 3 30 30 H 1.09002 * 109.47225 * 59.99895 * 1 2 3 31 31 H 1.09001 * 109.47893 * 59.99761 * 5 3 2 32 32 H 1.08997 * 109.47645 * 299.99625 * 5 3 2 33 33 H 0.96997 * 120.00092 * 179.97438 * 10 9 7 34 34 H 1.08000 * 120.00407 * 355.92843 * 17 15 6 35 35 H 1.08000 * 119.99901 * 5.09314 * 18 17 15 36 36 H 1.08001 * 126.71079 * 0.02562 * 20 19 18 37 37 H 1.09006 * 109.47282 * 180.02562 * 25 24 22 38 38 H 1.09001 * 109.47310 * 299.99535 * 25 24 22 39 39 H 1.08993 * 109.47812 * 60.00061 * 25 24 22 40 40 H 1.08003 * 125.80843 * 179.80170 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.1751 3.3350 -1.1855 8 1 3.8436 4.3567 -1.2979 9 6 4.7988 2.6859 -2.2457 10 7 4.6049 3.1021 -3.4763 11 14 5.9122 1.2218 -1.9195 12 1 5.1365 -0.0346 -2.0766 13 1 7.0393 1.2320 -2.8864 14 1 6.4459 1.3044 -0.5362 15 6 4.1732 3.3263 1.1658 16 8 4.0835 2.7210 2.2194 17 6 4.4781 4.7071 1.1674 18 6 4.5949 5.3748 2.3429 19 6 4.7931 6.7776 2.3441 20 6 5.0197 7.5488 3.4476 21 6 5.1615 8.8818 2.9874 22 6 5.4212 10.0761 3.8106 23 8 5.5408 9.9696 5.0151 24 8 5.5261 11.2865 3.2275 25 6 5.7831 12.4183 4.1000 26 6 5.0024 8.8417 1.6179 27 8 4.7834 7.5745 1.2557 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7806 0.8891 33 1 5.0401 2.6496 -4.2157 34 1 4.6224 5.2293 0.2331 35 1 4.5367 4.8369 3.2776 36 1 5.0814 7.2093 4.4710 37 1 5.8441 13.3295 3.5047 38 1 4.9729 12.5109 4.8232 39 1 6.7247 12.2646 4.6269 40 1 5.0478 9.6904 0.9514 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265397805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:13 Heat of formation + Delta-G solvation = -166.622969 kcal Electronic energy + Delta-G solvation = -28122.648930 eV Core-core repulsion = 23677.699463 eV Total energy + Delta-G solvation = -4444.949467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.86920 -41.77722 -41.23042 -40.60855 -37.67107 -37.52594 -36.82907 -35.25301 -34.37745 -34.07741 -31.32881 -30.03285 -28.62576 -27.95083 -27.04004 -25.08439 -24.72778 -22.56198 -22.25921 -21.38114 -20.65378 -19.26064 -18.91956 -18.70434 -18.26036 -18.12097 -17.66138 -17.44838 -17.16985 -17.13970 -17.04481 -16.87610 -16.07303 -15.70491 -15.40782 -14.84502 -14.67249 -14.45521 -14.42221 -14.32207 -14.26896 -14.00025 -13.64389 -13.50352 -13.25567 -12.99045 -12.93230 -12.73723 -12.38853 -11.95984 -11.84210 -11.83531 -11.82716 -11.78723 -11.70430 -11.26476 -11.06591 -10.74890 -9.94651 -9.09835 -8.58072 -6.22637 -0.56023 0.11691 1.11353 1.17979 1.25323 1.37884 1.46152 1.54030 1.62178 1.83803 1.96458 2.14331 2.41511 2.57849 2.98408 3.40999 3.66418 3.82056 3.89384 3.95155 4.14244 4.21567 4.25813 4.29701 4.30848 4.34366 4.35656 4.42314 4.60542 4.64411 4.74328 4.86759 4.95356 5.14435 5.17165 5.23883 5.27744 5.38084 5.83898 5.98244 6.08928 6.62595 6.70478 6.83440 7.20434 7.57074 8.55313 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.015544 B = 0.002583 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.876596 B =10838.761673 C =11753.437067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.452 3.548 4 O -0.524 6.524 5 C 0.098 3.902 6 N -0.448 5.448 7 C -0.350 4.350 8 H 0.079 0.921 9 C 0.033 3.967 10 N -0.883 5.883 11 Si 0.912 3.088 12 H -0.245 1.245 13 H -0.273 1.273 14 H -0.255 1.255 15 C 0.515 3.485 16 O -0.614 6.614 17 C -0.175 4.175 18 C -0.013 4.013 19 C -0.005 4.005 20 C -0.114 4.114 21 C -0.253 4.253 22 C 0.545 3.455 23 O -0.538 6.538 24 O -0.354 6.354 25 C 0.030 3.970 26 C 0.092 3.908 27 O -0.163 6.163 28 H 0.142 0.858 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.113 0.887 32 H 0.132 0.868 33 H 0.285 0.715 34 H 0.132 0.868 35 H 0.165 0.835 36 H 0.175 0.825 37 H 0.138 0.862 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 8.887 7.788 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.294 3.706 4 O -0.413 6.413 5 C -0.027 4.027 6 N -0.167 5.167 7 C -0.478 4.478 8 H 0.096 0.904 9 C -0.174 4.174 10 N -0.518 5.518 11 Si 0.735 3.265 12 H -0.170 1.170 13 H -0.198 1.198 14 H -0.179 1.179 15 C 0.310 3.690 16 O -0.502 6.502 17 C -0.195 4.195 18 C -0.034 4.034 19 C -0.053 4.053 20 C -0.134 4.134 21 C -0.256 4.256 22 C 0.392 3.608 23 O -0.429 6.429 24 O -0.270 6.270 25 C -0.063 4.063 26 C 0.020 3.980 27 O -0.056 6.056 28 H 0.160 0.840 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.095 0.905 34 H 0.149 0.851 35 H 0.182 0.818 36 H 0.193 0.807 37 H 0.156 0.844 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 0.639 8.721 8.100 11.919 hybrid contribution 0.136 -0.250 -0.119 0.309 sum 0.775 8.470 7.981 11.664 Atomic orbital electron populations 1.23569 0.74831 1.05938 1.02206 1.86486 1.25171 1.32256 1.84069 1.24593 0.92816 0.81655 0.71525 1.90606 1.67300 1.37589 1.45756 1.21484 0.87518 0.87464 1.06201 1.43277 1.57851 1.09322 1.06262 1.18825 1.40325 0.99962 0.88655 0.90360 1.25993 0.96709 1.00637 0.94032 1.69815 1.39672 1.42907 0.99364 0.86308 0.80185 0.80055 0.79971 1.17023 1.19830 1.17857 1.17362 0.79461 0.89181 0.82968 1.90673 1.58035 1.69938 1.31594 1.22105 1.03220 0.94285 0.99884 1.20673 0.95078 0.88166 0.99449 1.19338 1.10517 0.91411 0.84027 1.22049 1.00713 0.90518 1.00078 1.19689 1.19102 0.92498 0.94274 1.20043 0.72135 0.83140 0.85464 1.90833 1.48465 1.87022 1.16589 1.86524 1.82156 1.16196 1.42170 1.23622 1.01803 0.85626 0.95263 1.26086 0.91891 0.85073 0.94965 1.84132 1.67703 1.18218 1.35581 0.84009 0.92248 0.92518 0.87000 0.85041 0.90520 0.85065 0.81784 0.80719 0.84430 0.91858 0.91814 0.71773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.93 16 2 O -0.36 -12.87 10.56 -51.43 -0.54 -13.41 16 3 C 0.45 19.70 8.02 71.23 0.57 20.27 16 4 O -0.52 -26.18 16.18 21.95 0.36 -25.83 16 5 C 0.10 4.28 4.85 85.63 0.42 4.69 16 6 N -0.45 -21.93 1.59 -649.88 -1.03 -22.96 16 7 C -0.35 -18.49 8.80 84.13 0.74 -17.75 16 8 H 0.08 4.50 6.93 -2.91 -0.02 4.48 16 9 C 0.03 1.67 5.28 84.97 0.45 2.12 16 10 N -0.88 -47.64 13.95 21.69 0.30 -47.34 16 11 Si 0.91 38.30 25.22 68.60 1.73 40.03 16 12 H -0.25 -9.34 6.68 99.48 0.66 -8.67 16 13 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 14 H -0.25 -10.71 7.11 99.48 0.71 -10.00 16 15 C 0.51 24.49 7.39 85.02 0.63 25.12 16 16 O -0.61 -30.06 15.67 -4.80 -0.08 -30.13 16 17 C -0.17 -7.30 8.72 22.46 0.20 -7.10 16 18 C -0.01 -0.45 9.37 22.53 0.21 -0.24 16 19 C -0.01 -0.16 6.77 22.72 0.15 0.00 16 20 C -0.11 -3.00 10.64 22.73 0.24 -2.75 16 21 C -0.25 -5.99 6.16 -20.09 -0.12 -6.12 16 22 C 0.55 13.01 7.96 70.22 0.56 13.57 16 23 O -0.54 -15.82 16.73 19.80 0.33 -15.49 16 24 O -0.35 -6.41 10.41 -56.73 -0.59 -7.00 16 25 C 0.03 0.35 10.56 113.37 1.20 1.55 16 26 C 0.09 1.84 11.98 67.75 0.81 2.66 16 27 O -0.16 -4.57 10.12 -1.85 -0.02 -4.59 16 28 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 30 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 31 H 0.11 4.70 3.68 -2.39 -0.01 4.69 16 32 H 0.13 5.22 7.36 -2.39 -0.02 5.21 16 33 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 34 H 0.13 5.68 6.08 -2.91 -0.02 5.66 16 35 H 0.16 5.32 7.46 -2.91 -0.02 5.30 16 36 H 0.18 4.12 8.06 -2.91 -0.02 4.10 16 37 H 0.14 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.27 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -73.64 363.18 8.76 -64.88 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 1.06 Total: 23.89 kcal Atomic # 6 Polarization: 30.70 SS G_CDS: 7.25 Total: 37.95 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: -0.73 Total: -70.30 kcal Atomic # 8 Polarization: -95.91 SS G_CDS: -0.54 Total: -96.45 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 1.73 Total: 40.03 kcal Total: -73.64 8.76 -64.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265397805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.745 kcal (2) G-P(sol) polarization free energy of solvation -73.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds