Wall clock time and date at job start Tue Mar 31 2020 19:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86806 * 119.99923 * 2 1 4 4 H 1.48496 * 109.46762 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46917 * 239.99810 * 3 2 1 6 6 H 1.48495 * 109.47014 * 119.99735 * 3 2 1 7 7 C 1.38955 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00008 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99515 * 0.02562 * 7 2 1 10 10 C 1.34785 * 119.99628 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99929 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99786 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.46698 * 180.02562 * 12 10 9 14 14 C 1.48283 * 111.00349 * 76.50972 * 13 12 10 15 15 C 1.56014 * 105.07510 * 122.54114 * 14 13 12 16 16 H 1.08997 * 116.21944 * 159.74097 * 15 14 13 17 17 C 1.57078 * 99.67313 * 32.87354 * 15 14 13 18 18 C 1.49707 * 110.99714 * 194.10572 * 13 12 10 19 19 H 1.09005 * 116.16747 * 75.28383 * 18 13 12 20 20 C 1.56019 * 104.08784 * 306.12475 * 18 13 12 21 21 N 1.47867 * 105.11138 * 288.79985 * 20 18 13 22 22 C 1.34781 * 126.92917 * 181.94876 * 21 20 18 23 23 O 1.21597 * 120.00342 * 179.97438 * 22 21 20 24 24 C 1.47446 * 119.99490 * 359.97438 * 22 21 20 25 25 C 1.37981 * 124.15181 * 179.72589 * 24 22 21 26 26 S 1.72105 * 104.03398 * 179.89899 * 25 24 22 27 27 N 1.56398 * 96.15259 * 0.32392 * 26 25 24 28 28 N 1.27417 * 109.87966 * 359.80060 * 27 26 25 29 29 H 0.97003 * 119.99646 * 180.02562 * 1 2 3 30 30 H 0.97004 * 120.00452 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47112 * 299.99959 * 12 10 9 32 32 H 1.09000 * 109.47307 * 60.00177 * 12 10 9 33 33 H 1.09006 * 110.32377 * 241.43992 * 14 13 12 34 34 H 1.09002 * 110.32461 * 3.64232 * 14 13 12 35 35 H 1.08997 * 112.35756 * 64.14347 * 17 15 14 36 36 H 1.09004 * 112.35593 * 191.55607 * 17 15 14 37 37 H 1.09000 * 110.31859 * 169.89526 * 20 18 13 38 38 H 1.08995 * 110.39815 * 47.75183 * 20 18 13 39 39 H 1.08001 * 127.98232 * 359.96578 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2830 2.7464 -0.0006 5 1 3.1018 1.6964 -1.2125 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5579 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8630 0.0011 13 7 2.1985 -5.9795 0.0016 14 6 2.7894 -6.1729 1.3478 15 6 2.4526 -7.6474 1.7307 16 1 3.0702 -8.0959 2.5088 17 6 2.5023 -8.3078 0.3063 18 6 1.5169 -7.2682 -0.3384 19 1 1.2569 -7.4124 -1.3871 20 6 0.3407 -7.3567 0.6828 21 7 0.9820 -7.6306 1.9867 22 6 0.3635 -7.8260 3.1681 23 8 1.0190 -8.0439 4.1689 24 6 -1.1080 -7.7756 3.2471 25 6 -1.8285 -7.9681 4.4080 26 16 -3.4684 -7.7964 3.9148 27 7 -3.1619 -7.5258 2.4052 28 7 -1.9032 -7.5447 2.2084 29 1 -0.4850 -0.8401 0.0004 30 1 0.3534 -2.3907 0.0005 31 1 0.6175 -4.9205 0.8914 32 1 0.6169 -4.9210 -0.8886 33 1 3.8692 -6.0284 1.3117 34 1 2.3381 -5.4840 2.0619 35 1 3.4976 -8.2652 -0.1359 36 1 2.0972 -9.3198 0.3042 37 1 -0.3332 -8.1703 0.4143 38 1 -0.2026 -6.4125 0.7192 39 1 -1.4505 -8.1772 5.3979 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268955548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:28 Heat of formation + Delta-G solvation = 63.136961 kcal Electronic energy + Delta-G solvation = -27078.586525 eV Core-core repulsion = 23150.938569 eV Total energy + Delta-G solvation = -3927.647955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.68627 -40.88105 -38.73556 -37.94766 -34.47368 -33.80085 -32.54541 -31.32978 -30.77655 -29.88617 -27.47264 -26.49157 -25.49909 -24.15936 -23.48955 -21.38848 -20.85474 -20.27847 -19.61095 -18.46343 -17.84452 -16.97926 -16.80860 -16.64274 -16.24340 -15.92827 -15.41327 -15.06312 -14.74529 -14.42284 -13.91972 -13.73139 -13.62968 -13.37857 -12.84677 -12.73529 -12.48421 -12.42748 -12.24753 -12.06985 -11.70788 -11.43434 -11.28259 -11.16004 -11.04948 -10.86263 -10.70258 -10.45607 -10.44351 -10.28438 -10.18956 -9.83196 -9.50601 -8.97352 -8.48579 -8.00644 -7.95751 -6.72169 -3.84991 -0.31245 0.53785 1.11447 1.16491 2.54077 2.83278 3.33230 3.36357 3.44178 3.56706 3.76201 3.88142 4.10339 4.27826 4.31788 4.37786 4.47933 4.61956 4.81973 4.89047 4.96582 5.23423 5.28094 5.36868 5.43062 5.56406 5.62176 5.68689 5.70965 5.74116 5.92181 5.95647 6.07671 6.21126 6.89533 7.02617 7.08918 7.20312 7.73928 7.83740 8.11184 8.63892 8.84405 9.51327 9.92795 10.71284 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011708 B = 0.003402 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.035648 B = 8228.737011 C = 9753.263169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.010 4.010 3 Si 1.091 2.909 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.381 4.381 8 H 0.098 0.902 9 N -0.579 5.579 10 C 0.448 3.552 11 O -0.569 6.569 12 C 0.035 3.965 13 N -0.487 5.487 14 C 0.042 3.958 15 C 0.108 3.892 16 H 0.130 0.870 17 C -0.129 4.129 18 C 0.050 3.950 19 H 0.138 0.862 20 C 0.069 3.931 21 N -0.602 5.602 22 C 0.620 3.380 23 O -0.528 6.528 24 C -0.019 4.019 25 C -0.237 4.237 26 S 0.463 5.537 27 N -0.289 5.289 28 N -0.206 5.206 29 H 0.260 0.740 30 H 0.374 0.626 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.185 -20.652 6.419 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.212 4.212 3 Si 0.917 3.083 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.510 4.510 8 H 0.116 0.884 9 N -0.217 5.217 10 C 0.233 3.767 11 O -0.451 6.451 12 C -0.097 4.097 13 N -0.210 5.210 14 C -0.087 4.087 15 C 0.006 3.994 16 H 0.148 0.852 17 C -0.168 4.168 18 C -0.058 4.058 19 H 0.155 0.845 20 C -0.055 4.055 21 N -0.335 5.335 22 C 0.403 3.597 23 O -0.404 6.404 24 C -0.166 4.166 25 C -0.394 4.394 26 S 0.599 5.401 27 N -0.269 5.269 28 N -0.077 5.077 29 H 0.072 0.928 30 H 0.207 0.793 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.454 -18.668 5.666 20.885 hybrid contribution 0.154 -1.927 1.200 2.276 sum -7.300 -20.596 6.867 22.904 Atomic orbital electron populations 1.70900 1.06515 1.29309 1.47460 1.26488 0.96545 1.02579 0.95600 0.83140 0.74430 0.73687 0.77053 1.20441 1.20985 1.21072 1.20517 0.94618 0.83854 1.51993 0.88372 1.41936 1.08096 1.05537 1.66171 1.19644 0.88447 0.84182 0.84405 1.90520 1.13522 1.86845 1.54218 1.22137 0.94279 0.91765 1.01501 1.64621 1.29235 1.01307 1.25884 1.23653 1.02136 0.93482 0.89427 1.24319 0.80142 0.97568 0.97386 0.85184 1.23908 1.01186 0.97744 0.93914 1.24860 0.91835 0.90357 0.98765 0.84481 1.23454 0.96596 1.03043 0.82400 1.49058 1.08447 1.68456 1.07506 1.16229 0.83383 0.77457 0.82599 1.90840 1.64883 1.50299 1.34380 1.22615 0.97580 1.07435 0.89018 1.28889 0.99905 1.05243 1.05406 1.81557 1.06763 1.47718 1.04065 1.78696 1.11471 1.22275 1.14459 1.71680 0.95646 1.12942 1.27395 0.92843 0.79302 0.93075 0.89255 0.88457 0.92137 0.88057 0.89819 0.90146 0.89521 0.77441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.73 13.68 55.50 0.76 -24.97 16 2 C -0.01 -0.27 5.50 -17.47 -0.10 -0.37 16 3 Si 1.09 24.69 29.92 -169.99 -5.09 19.60 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.38 -10.89 9.68 -14.93 -0.14 -11.04 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.58 -14.90 5.28 -10.96 -0.06 -14.95 16 10 C 0.45 10.78 7.63 -10.98 -0.08 10.69 16 11 O -0.57 -15.68 15.47 5.55 0.09 -15.59 16 12 C 0.03 0.63 4.13 -4.98 -0.02 0.60 16 13 N -0.49 -7.77 4.84 -218.17 -1.06 -8.83 16 14 C 0.04 0.65 5.44 -1.45 -0.01 0.64 16 15 C 0.11 1.33 5.23 -62.56 -0.33 1.00 16 16 H 0.13 1.49 8.05 -51.93 -0.42 1.08 16 17 C -0.13 -1.29 6.80 -22.30 -0.15 -1.44 16 18 C 0.05 0.58 5.21 -62.31 -0.32 0.26 16 19 H 0.14 1.32 8.14 -51.93 -0.42 0.89 16 20 C 0.07 0.82 4.53 -1.68 -0.01 0.82 16 21 N -0.60 -7.86 2.95 -158.04 -0.47 -8.32 16 22 C 0.62 8.70 7.89 -12.51 -0.10 8.60 16 23 O -0.53 -8.49 17.14 5.28 0.09 -8.40 16 24 C -0.02 -0.23 6.78 -83.78 -0.57 -0.80 16 25 C -0.24 -2.08 11.21 30.64 0.34 -1.74 16 26 S 0.46 3.30 23.38 -107.50 -2.51 0.78 16 27 N -0.29 -3.23 12.49 60.35 0.75 -2.48 16 28 N -0.21 -2.57 9.10 32.74 0.30 -2.27 16 29 H 0.26 7.17 6.77 -40.82 -0.28 6.89 16 30 H 0.37 8.98 6.73 -40.82 -0.27 8.70 16 31 H 0.05 0.89 6.11 -51.93 -0.32 0.58 16 32 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 33 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 34 H 0.06 1.10 7.42 -51.93 -0.39 0.71 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.88 7.64 -51.93 -0.40 0.48 16 38 H 0.09 1.18 5.24 -51.93 -0.27 0.90 16 39 H 0.21 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 339.40 15.07 5.11 5.11 Total: -1.00 -36.14 339.40 -7.61 -43.75 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -4.04 Total: 9.34 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -1.49 Total: 7.23 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.23 Total: -61.82 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: 0.18 Total: -23.99 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.09 Total: 19.60 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.51 Total: 0.78 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.14 -7.61 -43.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268955548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.885 kcal (2) G-P(sol) polarization free energy of solvation -36.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds