Wall clock time and date at job start Tue Mar 31 2020 19:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99948 * 2 1 4 4 H 1.48500 * 109.47055 * 269.99966 * 3 2 1 5 5 H 1.48502 * 109.47007 * 30.00064 * 3 2 1 6 6 H 1.48498 * 109.47189 * 150.00039 * 3 2 1 7 7 C 1.38799 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00146 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99830 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00145 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47233 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99901 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99540 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99324 * 180.02562 * 13 11 10 15 15 H 1.08997 * 115.51965 * 9.57988 * 14 13 11 16 16 C 1.57125 * 116.92078 * 222.98576 * 14 13 11 17 17 H 1.09004 * 119.80021 * 3.77375 * 16 14 13 18 18 C 1.54387 * 118.20302 * 161.40658 * 16 14 13 19 19 N 1.48439 * 104.65215 * 86.20534 * 18 16 14 20 20 C 1.34770 * 127.98061 * 140.37763 * 19 18 16 21 21 O 1.21625 * 119.99820 * 179.73029 * 20 19 18 22 22 C 1.47235 * 120.00401 * 359.72841 * 20 19 18 23 23 C 1.37005 * 127.19141 * 189.25031 * 22 20 19 24 24 N 1.33316 * 106.37280 * 179.84368 * 23 22 20 25 25 N 1.28515 * 109.43742 * 0.43175 * 24 23 22 26 26 N 1.28710 * 110.64118 * 359.72233 * 25 24 23 27 27 H 0.96997 * 126.03568 * 180.02562 * 26 25 24 28 28 C 1.48142 * 104.17874 * 320.43938 * 19 18 16 29 29 C 1.53007 * 117.44154 * 154.99939 * 14 13 11 30 30 H 1.08996 * 119.53967 * 354.24388 * 29 14 13 31 31 H 0.96999 * 120.00612 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.47202 * 59.99863 * 10 9 7 33 33 H 1.09000 * 109.47018 * 300.00018 * 10 9 7 34 34 H 0.96993 * 120.00489 * 359.97438 * 13 11 10 35 35 H 1.09001 * 110.40370 * 204.98872 * 18 16 14 36 36 H 1.09000 * 110.40874 * 327.41834 * 18 16 14 37 37 H 1.08003 * 126.81172 * 359.97438 * 23 22 20 38 38 H 1.09007 * 110.40692 * 280.73114 * 28 19 18 39 39 H 1.09000 * 110.40717 * 158.42215 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3430 0.0003 14 6 2.3305 -7.7150 -0.0009 15 1 1.2577 -7.8145 -0.1657 16 6 3.0398 -8.7411 0.9546 17 1 3.8321 -8.4016 1.6218 18 6 2.2890 -10.0408 1.3160 19 7 2.6168 -10.9820 0.2160 20 6 2.8822 -12.3004 0.3040 21 8 3.1303 -12.9391 -0.7009 22 6 2.8719 -12.9675 1.6165 23 6 3.2861 -14.2421 1.9009 24 7 3.0983 -14.4151 3.2094 25 7 2.5976 -13.3448 3.7148 26 7 2.4406 -12.4452 2.8078 27 1 2.0807 -11.5547 2.9435 28 6 2.5872 -10.1403 -1.0027 29 6 3.2364 -8.8067 -0.5743 30 1 4.1799 -8.5299 -1.0447 31 1 -0.4851 0.8400 0.0004 32 1 3.1245 -3.7313 0.8905 33 1 3.1245 -3.7313 -0.8894 34 1 3.8010 -6.1834 0.0006 35 1 2.6442 -10.4322 2.2693 36 1 1.2147 -9.8610 1.3546 37 1 3.6873 -14.9629 1.2038 38 1 1.5593 -9.9760 -1.3263 39 1 3.1661 -10.6059 -1.8003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284145732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:07 Heat of formation + Delta-G solvation = 85.256118 kcal Electronic energy + Delta-G solvation = -24952.263262 eV Core-core repulsion = 21025.574465 eV Total energy + Delta-G solvation = -3926.688797 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.93783 -41.01764 -39.48878 -38.49514 -35.28659 -34.10781 -32.72001 -32.51472 -31.84351 -29.36729 -29.30841 -26.86416 -25.57352 -24.20672 -23.47254 -22.02628 -21.50932 -20.86303 -20.62218 -18.74176 -18.01865 -17.72127 -17.02350 -16.81552 -16.58678 -16.52305 -15.66103 -15.11617 -14.98281 -14.88268 -14.39493 -14.38170 -14.10697 -13.67340 -13.28810 -13.20936 -13.08083 -12.70662 -12.64390 -12.44748 -12.15826 -11.79787 -11.33933 -11.22214 -11.14120 -11.10972 -11.06065 -10.85485 -10.53458 -10.12112 -9.91693 -9.71552 -9.52362 -9.15425 -8.98071 -8.36472 -6.61243 -6.30486 -4.02301 0.30601 1.74005 1.74762 2.08508 2.41237 2.54979 2.69364 3.11155 3.16427 3.18237 3.24094 3.43549 3.50330 3.82387 3.93212 4.07534 4.11527 4.19726 4.34616 4.38883 4.47257 4.60473 4.68698 4.72269 4.86454 5.05149 5.18303 5.22895 5.28965 5.40407 5.44556 5.46952 5.64856 5.71852 5.96643 5.98237 6.28701 6.63379 7.25890 7.37171 7.51193 7.70767 8.26230 8.31164 9.15108 10.76879 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.032869 B = 0.001744 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.668901 B =16055.423357 C =16411.260314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.057 6.057 10 C -0.154 4.154 11 C 0.539 3.461 12 O -0.509 6.509 13 N -0.710 5.710 14 C 0.142 3.858 15 H 0.146 0.854 16 C -0.197 4.197 17 H 0.130 0.870 18 C 0.119 3.881 19 N -0.621 5.621 20 C 0.620 3.380 21 O -0.510 6.510 22 C -0.065 4.065 23 C 0.036 3.964 24 N -0.268 5.268 25 N -0.045 5.045 26 N -0.378 5.378 27 H 0.450 0.550 28 C 0.137 3.863 29 C -0.179 4.179 30 H 0.127 0.873 31 H 0.269 0.731 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.403 0.597 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.206 0.794 38 H 0.087 0.913 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.387 -22.930 1.940 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.326 3.674 12 O -0.382 6.382 13 N -0.361 5.361 14 C 0.033 3.967 15 H 0.163 0.837 16 C -0.219 4.219 17 H 0.148 0.852 18 C -0.005 4.005 19 N -0.356 5.356 20 C 0.406 3.594 21 O -0.383 6.383 22 C -0.199 4.199 23 C -0.124 4.124 24 N -0.133 5.133 25 N -0.027 5.027 26 N -0.112 5.112 27 H 0.304 0.696 28 C 0.015 3.985 29 C -0.200 4.200 30 H 0.145 0.855 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.237 0.763 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.223 0.777 38 H 0.105 0.895 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.237 -24.051 2.848 25.009 hybrid contribution 2.547 2.259 -0.874 3.515 sum 8.784 -21.792 1.973 23.578 Atomic orbital electron populations 1.70004 1.05963 1.27599 1.46614 1.24995 0.95043 0.99083 0.94409 0.86156 0.79399 0.81479 0.78405 1.20222 1.20699 1.19685 1.22850 0.94911 0.91528 1.59296 0.90850 1.85417 1.04522 0.96390 1.96760 1.23542 1.06931 0.94797 1.05217 1.20409 0.86420 0.86128 0.74435 1.90715 1.15285 1.85409 1.46785 1.45399 1.10173 1.03655 1.76869 1.22246 0.97910 0.78800 0.97697 0.83696 1.24798 1.05071 0.98159 0.93839 0.85218 1.22142 1.00834 0.88108 0.89380 1.49218 1.69167 1.06929 1.10256 1.16240 0.77191 0.79840 0.86142 1.90905 1.48740 1.63450 1.35241 1.22266 1.11980 0.97400 0.88248 1.23962 1.00557 0.94290 0.93573 1.75039 1.14200 1.15995 1.08095 1.78254 1.14578 0.94029 1.15861 1.46459 1.42780 1.16263 1.05687 0.69555 1.21819 1.02002 0.87536 0.87160 1.24201 1.03089 0.96766 0.95899 0.85482 0.92084 0.88945 0.88923 0.76270 0.90896 0.88635 0.77720 0.89452 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.26 13.22 55.49 0.73 -24.53 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.65 29.55 -169.99 -5.02 15.63 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.54 -14.63 9.50 30.94 0.29 -14.33 16 8 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 9 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 10 C -0.15 -2.77 6.16 36.01 0.22 -2.55 16 11 C 0.54 8.57 7.85 -10.99 -0.09 8.48 16 12 O -0.51 -10.10 15.43 5.56 0.09 -10.02 16 13 N -0.71 -7.29 5.57 -51.64 -0.29 -7.57 16 14 C 0.14 1.17 6.20 -65.69 -0.41 0.76 16 15 H 0.15 1.39 7.40 -51.93 -0.38 1.01 16 16 C -0.20 -1.11 7.23 -86.98 -0.63 -1.74 16 17 H 0.13 0.66 8.14 -51.93 -0.42 0.23 16 18 C 0.12 0.54 6.07 -2.25 -0.01 0.52 16 19 N -0.62 -4.07 3.33 -170.40 -0.57 -4.63 16 20 C 0.62 5.28 7.90 -12.61 -0.10 5.18 16 21 O -0.51 -5.88 17.20 5.26 0.09 -5.79 16 22 C -0.06 -0.50 6.96 -82.33 -0.57 -1.07 16 23 C 0.04 0.29 11.88 -17.35 -0.21 0.08 16 24 N -0.27 -2.66 12.35 30.47 0.38 -2.28 16 25 N -0.05 -0.41 13.35 60.35 0.81 0.39 16 26 N -0.38 -2.45 6.42 33.31 0.21 -2.23 16 27 H 0.45 1.60 5.48 -190.34 -1.04 0.55 16 28 C 0.14 0.85 6.84 -2.41 -0.02 0.84 16 29 C -0.18 -1.07 6.91 -89.21 -0.62 -1.68 16 30 H 0.13 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.09 1.52 8.14 -51.92 -0.42 1.09 16 33 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 34 H 0.40 3.02 8.83 -40.82 -0.36 2.66 16 35 H 0.07 0.22 4.78 -51.93 -0.25 -0.03 16 36 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.21 1.18 8.06 -52.48 -0.42 0.76 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.66 7.88 -51.93 -0.41 0.25 16 LS Contribution 354.68 15.07 5.34 5.34 Total: -1.00 -36.07 354.68 -7.62 -43.69 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.95 Total: -0.75 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -2.23 Total: -3.57 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 1.27 Total: -40.86 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.18 Total: -15.81 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.07 -7.62 -43.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284145732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.944 kcal (2) G-P(sol) polarization free energy of solvation -36.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds