Wall clock time and date at job start Tue Mar 31 2020 19:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99948 * 2 1 4 4 H 1.48500 * 109.47055 * 269.99966 * 3 2 1 5 5 H 1.48502 * 109.47007 * 30.00064 * 3 2 1 6 6 H 1.48498 * 109.47189 * 150.00039 * 3 2 1 7 7 C 1.38799 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00146 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99830 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00145 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47233 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99901 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99540 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99324 * 180.02562 * 13 11 10 15 15 H 1.08997 * 115.51965 * 9.57988 * 14 13 11 16 16 C 1.57125 * 116.92078 * 222.98576 * 14 13 11 17 17 H 1.09004 * 119.80021 * 3.77375 * 16 14 13 18 18 C 1.54387 * 118.20302 * 161.40658 * 16 14 13 19 19 N 1.48439 * 104.65215 * 86.20534 * 18 16 14 20 20 C 1.34770 * 127.98061 * 140.37763 * 19 18 16 21 21 O 1.21625 * 119.99820 * 179.73029 * 20 19 18 22 22 C 1.47235 * 120.00401 * 359.72841 * 20 19 18 23 23 C 1.37005 * 127.19141 * 189.25031 * 22 20 19 24 24 N 1.33316 * 106.37280 * 179.84368 * 23 22 20 25 25 N 1.28515 * 109.43742 * 0.43175 * 24 23 22 26 26 N 1.28710 * 110.64118 * 359.72233 * 25 24 23 27 27 H 0.96997 * 126.03568 * 180.02562 * 26 25 24 28 28 C 1.48142 * 104.17874 * 320.43938 * 19 18 16 29 29 C 1.53007 * 117.44154 * 154.99939 * 14 13 11 30 30 H 1.08996 * 119.53967 * 354.24388 * 29 14 13 31 31 H 0.96999 * 120.00612 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.47202 * 59.99863 * 10 9 7 33 33 H 1.09000 * 109.47018 * 300.00018 * 10 9 7 34 34 H 0.96993 * 120.00489 * 359.97438 * 13 11 10 35 35 H 1.09001 * 110.40370 * 204.98872 * 18 16 14 36 36 H 1.09000 * 110.40874 * 327.41834 * 18 16 14 37 37 H 1.08003 * 126.81172 * 359.97438 * 23 22 20 38 38 H 1.09007 * 110.40692 * 280.73114 * 28 19 18 39 39 H 1.09000 * 110.40717 * 158.42215 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3430 0.0003 14 6 2.3305 -7.7150 -0.0009 15 1 1.2577 -7.8145 -0.1657 16 6 3.0398 -8.7411 0.9546 17 1 3.8321 -8.4016 1.6218 18 6 2.2890 -10.0408 1.3160 19 7 2.6168 -10.9820 0.2160 20 6 2.8822 -12.3004 0.3040 21 8 3.1303 -12.9391 -0.7009 22 6 2.8719 -12.9675 1.6165 23 6 3.2861 -14.2421 1.9009 24 7 3.0983 -14.4151 3.2094 25 7 2.5976 -13.3448 3.7148 26 7 2.4406 -12.4452 2.8078 27 1 2.0807 -11.5547 2.9435 28 6 2.5872 -10.1403 -1.0027 29 6 3.2364 -8.8067 -0.5743 30 1 4.1799 -8.5299 -1.0447 31 1 -0.4851 0.8400 0.0004 32 1 3.1245 -3.7313 0.8905 33 1 3.1245 -3.7313 -0.8894 34 1 3.8010 -6.1834 0.0006 35 1 2.6442 -10.4322 2.2693 36 1 1.2147 -9.8610 1.3546 37 1 3.6873 -14.9629 1.2038 38 1 1.5593 -9.9760 -1.3263 39 1 3.1661 -10.6059 -1.8003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284145732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:06 Heat of formation + Delta-G solvation = 57.129849 kcal Electronic energy + Delta-G solvation = -24953.482909 eV Core-core repulsion = 21025.574465 eV Total energy + Delta-G solvation = -3927.908443 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.55782 -41.64890 -40.51509 -39.33171 -36.08433 -34.81729 -34.57682 -33.56320 -32.50712 -30.64895 -29.79899 -27.75353 -27.43554 -24.86009 -24.08948 -22.73307 -22.07099 -21.85883 -21.29024 -19.83357 -19.30174 -18.38012 -17.92238 -17.70039 -17.50965 -17.18117 -16.87165 -16.41363 -16.31080 -16.05149 -15.50284 -14.99569 -14.90168 -14.74457 -14.53057 -14.05055 -13.87181 -13.74181 -13.48028 -13.32147 -13.15917 -12.89837 -12.81738 -12.61123 -12.41896 -12.02960 -11.90876 -11.75364 -11.71564 -11.19404 -11.13774 -10.97847 -10.76693 -10.26814 -10.09856 -9.81518 -8.65261 -8.34423 -6.11761 -0.31002 1.08974 1.15362 1.27195 1.42737 1.45797 1.46772 1.54130 1.59034 1.80123 2.11686 2.27847 2.41283 2.95579 3.00199 3.26353 3.33161 3.36973 3.47214 3.64379 3.78451 3.87569 3.89855 3.95790 4.06352 4.24026 4.31437 4.32295 4.52985 4.65279 4.68526 4.76451 4.88332 4.91323 5.00775 5.42046 5.43064 5.49514 6.05636 6.20328 6.42834 6.62585 7.07401 7.07623 7.18492 8.74477 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.032869 B = 0.001744 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.668901 B =16055.423357 C =16411.260314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.149 6.149 10 C -0.131 4.131 11 C 0.543 3.457 12 O -0.557 6.557 13 N -0.683 5.683 14 C 0.113 3.887 15 H 0.128 0.872 16 C -0.175 4.175 17 H 0.146 0.854 18 C 0.114 3.886 19 N -0.616 5.616 20 C 0.623 3.377 21 O -0.545 6.545 22 C -0.063 4.063 23 C 0.032 3.968 24 N -0.294 5.294 25 N -0.060 5.060 26 N -0.358 5.358 27 H 0.462 0.538 28 C 0.132 3.868 29 C -0.161 4.161 30 H 0.142 0.858 31 H 0.271 0.729 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.420 0.580 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.222 0.778 38 H 0.092 0.908 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.767 -23.179 2.332 25.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.078 5.922 10 C -0.282 4.282 11 C 0.330 3.670 12 O -0.434 6.434 13 N -0.335 5.335 14 C 0.006 3.994 15 H 0.146 0.854 16 C -0.196 4.196 17 H 0.164 0.836 18 C -0.009 4.009 19 N -0.349 5.349 20 C 0.410 3.590 21 O -0.421 6.421 22 C -0.198 4.198 23 C -0.128 4.128 24 N -0.158 5.158 25 N -0.042 5.042 26 N -0.094 5.094 27 H 0.319 0.681 28 C 0.011 3.989 29 C -0.181 4.181 30 H 0.160 0.840 31 H 0.080 0.920 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.258 0.742 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.239 0.761 38 H 0.110 0.890 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.663 -24.313 3.266 26.016 hybrid contribution 1.840 2.209 -1.013 3.048 sum 10.503 -22.104 2.253 24.576 Atomic orbital electron populations 1.70169 1.07916 1.28582 1.48030 1.26090 0.95932 1.03251 0.93824 0.84987 0.78255 0.76230 0.78731 1.19435 1.20476 1.18167 1.23209 0.95386 0.92054 1.58751 0.89824 1.85569 1.10387 0.99162 1.97061 1.23376 1.03677 0.94121 1.07070 1.19993 0.86131 0.86400 0.74514 1.90706 1.17291 1.85889 1.49557 1.44981 1.10314 1.03419 1.74768 1.22273 0.97691 0.78056 1.01400 0.85409 1.24831 1.04096 0.96717 0.93946 0.83585 1.22341 1.01779 0.87219 0.89524 1.49206 1.68094 1.06579 1.11041 1.16238 0.76800 0.80172 0.85819 1.90891 1.50554 1.64330 1.36290 1.22154 1.12105 0.97335 0.88192 1.24322 1.00226 0.94918 0.93296 1.75027 1.15184 1.16620 1.09001 1.78207 1.15124 0.94420 1.16420 1.46425 1.41706 1.16406 1.04911 0.68114 1.21891 1.02399 0.87546 0.87101 1.24137 1.02488 0.95100 0.96385 0.84037 0.92029 0.86918 0.87023 0.74240 0.88943 0.87296 0.76138 0.89010 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.26 13.22 21.65 0.29 -53.97 16 2 C 0.01 0.77 5.49 84.86 0.47 1.23 16 3 Si 1.00 42.05 29.55 68.60 2.03 44.07 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.55 -29.76 9.50 67.95 0.65 -29.12 16 8 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 9 S -0.15 -7.76 20.57 -56.49 -1.16 -8.92 16 10 C -0.13 -4.57 6.16 71.24 0.44 -4.13 16 11 C 0.54 16.79 7.85 87.66 0.69 17.47 16 12 O -0.56 -22.48 15.43 -3.03 -0.05 -22.53 16 13 N -0.68 -12.47 5.57 -435.68 -2.43 -14.89 16 14 C 0.11 1.63 6.20 46.44 0.29 1.92 16 15 H 0.13 2.37 7.40 -2.39 -0.02 2.35 16 16 C -0.18 -1.38 7.23 -8.43 -0.06 -1.44 16 17 H 0.15 0.81 8.14 -2.38 -0.02 0.79 16 18 C 0.11 0.69 6.07 86.48 0.52 1.21 16 19 N -0.62 -6.64 3.33 -811.28 -2.70 -9.34 16 20 C 0.62 9.55 7.90 86.61 0.68 10.24 16 21 O -0.54 -12.02 17.20 -4.11 -0.07 -12.09 16 22 C -0.06 -0.86 6.96 40.41 0.28 -0.58 16 23 C 0.03 0.49 11.88 84.18 1.00 1.49 16 24 N -0.29 -5.55 12.35 -57.50 -0.71 -6.26 16 25 N -0.06 -1.01 13.35 37.02 0.49 -0.51 16 26 N -0.36 -3.91 6.42 -48.52 -0.31 -4.22 16 27 H 0.46 2.06 5.48 -219.90 -1.20 0.86 16 28 C 0.13 1.38 6.84 86.53 0.59 1.97 16 29 C -0.16 -1.45 6.91 -9.88 -0.07 -1.52 16 30 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.11 3.47 8.14 -2.40 -0.02 3.45 16 33 H 0.11 3.46 8.14 -2.40 -0.02 3.44 16 34 H 0.42 4.84 8.83 -92.71 -0.82 4.02 16 35 H 0.09 0.22 4.78 -2.39 -0.01 0.21 16 36 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.22 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.10 1.11 7.88 -2.39 -0.02 1.09 16 Total: -1.00 -81.24 354.68 -0.02 -81.26 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -0.88 Total: 8.67 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 5.48 Total: -1.26 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -5.37 Total: -89.20 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.12 Total: -34.62 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: -7.76 SS G_CDS: -1.16 Total: -8.92 kcal Total: -81.24 -0.02 -81.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284145732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.395 kcal (2) G-P(sol) polarization free energy of solvation -81.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds