Wall clock time and date at job start Tue Mar 31 2020 20:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46509 * 119.99974 * 2 1 4 4 C 1.53000 * 109.47044 * 270.00491 * 3 2 1 5 5 H 1.08993 * 109.47293 * 59.99437 * 4 3 2 6 6 O 1.42907 * 109.46643 * 299.99940 * 4 3 2 7 7 C 1.52990 * 109.47159 * 180.02562 * 4 3 2 8 8 N 1.46501 * 109.47176 * 184.99587 * 7 4 3 9 9 C 1.36942 * 119.99807 * 179.72151 * 8 7 4 10 10 H 1.07999 * 120.00358 * 0.27479 * 9 8 7 11 11 C 1.38815 * 119.99790 * 180.27547 * 9 8 7 12 12 N 1.31616 * 120.00305 * 179.97438 * 11 9 8 13 13 Si 1.86806 * 119.99962 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47352 * 89.99846 * 13 11 9 15 15 H 1.48500 * 109.46686 * 209.99747 * 13 11 9 16 16 H 1.48502 * 109.46797 * 329.99509 * 13 11 9 17 17 C 1.34770 * 120.00282 * 180.02562 * 2 1 3 18 18 O 1.21614 * 120.00394 * 176.20170 * 17 2 1 19 19 C 1.47423 * 119.99788 * 356.20390 * 17 2 1 20 20 C 1.36091 * 126.44979 * 185.82434 * 19 17 2 21 21 O 1.34252 * 106.95364 * 179.90200 * 20 19 17 22 22 C 1.34055 * 108.22334 * 0.36661 * 21 20 19 23 23 C 1.50698 * 125.37937 * 179.80060 * 22 21 20 24 24 F 1.39896 * 109.47411 * 269.96352 * 23 22 21 25 25 F 1.39909 * 109.46880 * 29.96243 * 23 22 21 26 26 F 1.39894 * 109.47128 * 149.95922 * 23 22 21 27 27 N 1.29935 * 109.24256 * 359.77276 * 22 21 20 28 28 H 1.08998 * 109.47442 * 95.66533 * 1 2 3 29 29 H 1.09004 * 109.46819 * 215.66437 * 1 2 3 30 30 H 1.09005 * 109.47294 * 335.66141 * 1 2 3 31 31 H 1.08994 * 109.47092 * 149.99784 * 3 2 1 32 32 H 1.09005 * 109.46562 * 29.99861 * 3 2 1 33 33 H 0.96705 * 113.99767 * 299.99708 * 6 4 3 34 34 H 1.08994 * 109.47533 * 64.99308 * 7 4 3 35 35 H 1.09002 * 109.47025 * 304.99408 * 7 4 3 36 36 H 0.96996 * 120.00041 * 0.02562 * 8 7 4 37 37 H 0.96992 * 120.00627 * 180.02562 * 12 11 9 38 38 H 1.08009 * 126.52379 * 0.03384 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 1 1.5000 1.8408 -1.9563 6 8 3.2247 0.7145 -2.1162 7 6 3.2179 3.0351 -1.4425 8 7 3.3578 3.5183 -2.8185 9 6 4.0076 4.6978 -3.0672 10 1 4.4208 5.2696 -2.2495 11 6 4.1352 5.1584 -4.3705 12 7 4.7592 6.2923 -4.6096 13 14 3.4199 4.1697 -5.7848 14 1 2.0208 4.6013 -6.0328 15 1 4.2318 4.3961 -7.0074 16 1 3.4385 2.7258 -5.4385 17 6 2.1389 -1.1671 -0.0005 18 8 3.3530 -1.1683 -0.0703 19 6 1.4042 -2.4425 0.0834 20 6 1.9498 -3.6834 0.2040 21 8 0.9308 -4.5564 0.2478 22 6 -0.2154 -3.8684 0.1480 23 6 -1.5971 -4.4697 0.1511 24 9 -1.9788 -4.7683 -1.1613 25 9 -1.5936 -5.6425 0.9140 26 9 -2.5018 -3.5568 0.7036 27 7 0.0533 -2.6010 0.0488 28 1 -0.3634 -0.1014 -1.0226 29 1 -0.3633 -0.8350 0.5992 30 1 -0.3634 0.9364 0.4235 31 1 3.1499 1.1385 0.5138 32 1 1.6083 2.0284 0.5138 33 1 4.0872 0.5461 -1.7126 34 1 4.2061 2.8838 -1.0084 35 1 2.6709 3.7709 -0.8530 36 1 2.9864 3.0049 -3.5529 37 1 4.8481 6.6144 -5.5202 38 1 3.0022 -3.9206 0.2569 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284430563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:27 Heat of formation + Delta-G solvation = -168.127923 kcal Electronic energy + Delta-G solvation = -29212.418273 eV Core-core repulsion = 24257.839557 eV Total energy + Delta-G solvation = -4954.578716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.97198 -48.49748 -48.46817 -44.36279 -40.09663 -37.48387 -36.03079 -35.24652 -34.13157 -32.12433 -31.45939 -29.85329 -27.58620 -27.02758 -26.24828 -24.11192 -22.95583 -22.22965 -21.28278 -20.66953 -19.45011 -19.21705 -18.87436 -17.82459 -17.68936 -17.52273 -17.02983 -16.65630 -16.04929 -15.39036 -15.26954 -15.22707 -14.93921 -14.84888 -14.57232 -14.56456 -14.51486 -14.44204 -13.98650 -13.60890 -13.46665 -13.32945 -13.14673 -12.98797 -12.41907 -12.36102 -12.18594 -11.66437 -11.24107 -11.17508 -10.88735 -10.83248 -10.42276 -10.16247 -10.07352 -9.81018 -9.56795 -8.90228 -8.67069 -7.22429 -5.75609 -3.11115 0.21541 0.87452 1.02727 1.98410 2.51037 2.67847 2.85309 3.38288 3.41797 3.45760 3.49005 3.49872 3.82978 4.02060 4.44421 4.62544 4.65370 4.76814 4.81852 4.89419 5.04538 5.16028 5.44396 5.50000 5.56889 5.58317 5.79057 5.82370 5.89979 6.23645 6.41533 6.43875 6.62327 7.06237 7.79866 7.97883 8.07579 8.43303 9.23086 9.95543 10.15648 11.42553 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.002375 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.277950 B =11786.779059 C =12152.837290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.589 5.589 3 C 0.085 3.915 4 C 0.081 3.919 5 H 0.096 0.904 6 O -0.551 6.551 7 C 0.131 3.869 8 N -0.749 5.749 9 C -0.246 4.246 10 H 0.089 0.911 11 C 0.005 3.995 12 N -0.934 5.934 13 Si 0.883 3.117 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.273 1.273 17 C 0.604 3.396 18 O -0.523 6.523 19 C -0.060 4.060 20 C 0.057 3.943 21 O -0.167 6.167 22 C 0.088 3.912 23 C 0.587 3.413 24 F -0.151 7.151 25 F -0.156 7.156 26 F -0.142 7.142 27 N -0.386 5.386 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.377 0.623 34 H 0.030 0.970 35 H 0.034 0.966 36 H 0.365 0.635 37 H 0.260 0.740 38 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.832 -25.856 15.459 33.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.319 5.319 3 C -0.038 4.038 4 C 0.021 3.979 5 H 0.114 0.886 6 O -0.357 6.357 7 C 0.002 3.998 8 N -0.395 5.395 9 C -0.376 4.376 10 H 0.107 0.893 11 C -0.191 4.191 12 N -0.582 5.582 13 Si 0.713 3.287 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.198 1.198 17 C 0.390 3.610 18 O -0.400 6.400 19 C -0.182 4.182 20 C -0.017 4.017 21 O -0.050 6.050 22 C -0.121 4.121 23 C 0.531 3.469 24 F -0.132 7.132 25 F -0.137 7.137 26 F -0.123 7.123 27 N -0.118 5.118 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.225 0.775 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.199 0.801 37 H 0.070 0.930 38 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -14.108 -25.228 15.025 32.577 hybrid contribution 0.237 -1.001 -0.737 1.266 sum -13.871 -26.229 14.288 32.932 Atomic orbital electron populations 1.22273 0.78111 1.03795 1.03157 1.47483 1.07774 1.05332 1.71342 1.22383 0.98435 0.84111 0.98833 1.22556 0.95781 0.88403 0.91190 0.88571 1.86527 1.33322 1.58979 1.56868 1.21209 0.97399 0.92411 0.88749 1.42588 1.69454 1.25551 1.01956 1.19049 1.28325 0.96191 0.94007 0.89282 1.24662 1.00375 0.97034 0.96987 1.69700 1.47336 1.21325 1.19859 0.86548 0.78803 0.80383 0.82964 1.21128 1.21730 1.19839 1.16498 0.85925 0.81410 0.77146 1.90822 1.12333 1.86328 1.50493 1.22051 0.88243 0.96512 1.11367 1.25772 0.93574 0.86395 0.95983 1.84407 1.14253 1.38643 1.67689 1.25638 0.88818 0.87480 1.10173 1.15971 0.80070 0.75712 0.75139 1.93338 1.91479 1.92998 1.35432 1.93312 1.96496 1.48271 1.75634 1.93327 1.67247 1.66511 1.85176 1.70949 1.14809 1.14255 1.11832 0.92243 0.88498 0.91035 0.89075 0.88912 0.77529 0.95192 0.94811 0.80121 0.93049 0.73553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 9.68 59.85 0.58 1.24 16 2 N -0.59 -6.82 2.83 -182.84 -0.52 -7.34 16 3 C 0.09 1.01 5.18 -4.04 -0.02 0.99 16 4 C 0.08 1.26 3.27 -26.74 -0.09 1.18 16 5 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 6 O -0.55 -9.64 12.01 -47.99 -0.58 -10.22 16 7 C 0.13 2.47 5.90 -4.05 -0.02 2.44 16 8 N -0.75 -18.33 5.35 -59.91 -0.32 -18.65 16 9 C -0.25 -7.11 10.47 -15.06 -0.16 -7.27 16 10 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 11 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 12 N -0.93 -29.84 13.97 55.49 0.78 -29.06 16 13 Si 0.88 22.89 27.74 -169.99 -4.71 18.18 16 14 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 16 H -0.27 -6.87 6.52 56.52 0.37 -6.50 16 17 C 0.60 7.46 7.23 -12.52 -0.09 7.37 16 18 O -0.52 -7.46 15.05 -7.49 -0.11 -7.57 16 19 C -0.06 -0.60 6.67 -83.02 -0.55 -1.15 16 20 C 0.06 0.41 11.95 29.96 0.36 0.77 16 21 O -0.17 -1.26 10.70 6.51 0.07 -1.19 16 22 C 0.09 0.73 7.53 -13.08 -0.10 0.63 16 23 C 0.59 4.10 3.57 36.00 0.13 4.23 16 24 F -0.15 -1.13 17.30 2.25 0.04 -1.09 16 25 F -0.16 -1.02 17.28 2.25 0.04 -0.98 16 26 F -0.14 -1.02 17.23 2.25 0.04 -0.98 16 27 N -0.39 -3.74 7.75 -7.65 -0.06 -3.80 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.10 0.89 5.25 -51.93 -0.27 0.61 16 30 H 0.07 0.55 7.83 -51.93 -0.41 0.14 16 31 H 0.09 1.10 7.48 -51.93 -0.39 0.71 16 32 H 0.09 0.90 7.86 -51.93 -0.41 0.49 16 33 H 0.38 6.06 8.34 45.56 0.38 6.44 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.37 9.03 5.53 -40.82 -0.23 8.80 16 37 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 38 H 0.25 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 344.15 15.07 5.19 5.19 Total: -1.00 -35.13 344.15 -3.24 -38.37 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -3.03 Total: 8.64 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -0.06 Total: 10.49 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.12 Total: -58.84 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.62 Total: -18.98 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.12 Total: -3.05 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.71 Total: 18.18 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.13 -3.24 -38.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284430563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.758 kcal (2) G-P(sol) polarization free energy of solvation -35.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds