Wall clock time and date at job start Tue Mar 31 2020 20:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46509 * 119.99974 * 2 1 4 4 C 1.53000 * 109.47044 * 270.00491 * 3 2 1 5 5 H 1.08993 * 109.47293 * 59.99437 * 4 3 2 6 6 O 1.42907 * 109.46643 * 299.99940 * 4 3 2 7 7 C 1.52990 * 109.47159 * 180.02562 * 4 3 2 8 8 N 1.46501 * 109.47176 * 184.99587 * 7 4 3 9 9 C 1.36942 * 119.99807 * 179.72151 * 8 7 4 10 10 H 1.07999 * 120.00358 * 0.27479 * 9 8 7 11 11 C 1.38815 * 119.99790 * 180.27547 * 9 8 7 12 12 N 1.31616 * 120.00305 * 179.97438 * 11 9 8 13 13 Si 1.86806 * 119.99962 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47352 * 89.99846 * 13 11 9 15 15 H 1.48500 * 109.46686 * 209.99747 * 13 11 9 16 16 H 1.48502 * 109.46797 * 329.99509 * 13 11 9 17 17 C 1.34770 * 120.00282 * 180.02562 * 2 1 3 18 18 O 1.21614 * 120.00394 * 176.20170 * 17 2 1 19 19 C 1.47423 * 119.99788 * 356.20390 * 17 2 1 20 20 C 1.36091 * 126.44979 * 185.82434 * 19 17 2 21 21 O 1.34252 * 106.95364 * 179.90200 * 20 19 17 22 22 C 1.34055 * 108.22334 * 0.36661 * 21 20 19 23 23 C 1.50698 * 125.37937 * 179.80060 * 22 21 20 24 24 F 1.39896 * 109.47411 * 269.96352 * 23 22 21 25 25 F 1.39909 * 109.46880 * 29.96243 * 23 22 21 26 26 F 1.39894 * 109.47128 * 149.95922 * 23 22 21 27 27 N 1.29935 * 109.24256 * 359.77276 * 22 21 20 28 28 H 1.08998 * 109.47442 * 95.66533 * 1 2 3 29 29 H 1.09004 * 109.46819 * 215.66437 * 1 2 3 30 30 H 1.09005 * 109.47294 * 335.66141 * 1 2 3 31 31 H 1.08994 * 109.47092 * 149.99784 * 3 2 1 32 32 H 1.09005 * 109.46562 * 29.99861 * 3 2 1 33 33 H 0.96705 * 113.99767 * 299.99708 * 6 4 3 34 34 H 1.08994 * 109.47533 * 64.99308 * 7 4 3 35 35 H 1.09002 * 109.47025 * 304.99408 * 7 4 3 36 36 H 0.96996 * 120.00041 * 0.02562 * 8 7 4 37 37 H 0.96992 * 120.00627 * 180.02562 * 12 11 9 38 38 H 1.08009 * 126.52379 * 0.03384 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 1 1.5000 1.8408 -1.9563 6 8 3.2247 0.7145 -2.1162 7 6 3.2179 3.0351 -1.4425 8 7 3.3578 3.5183 -2.8185 9 6 4.0076 4.6978 -3.0672 10 1 4.4208 5.2696 -2.2495 11 6 4.1352 5.1584 -4.3705 12 7 4.7592 6.2923 -4.6096 13 14 3.4199 4.1697 -5.7848 14 1 2.0208 4.6013 -6.0328 15 1 4.2318 4.3961 -7.0074 16 1 3.4385 2.7258 -5.4385 17 6 2.1389 -1.1671 -0.0005 18 8 3.3530 -1.1683 -0.0703 19 6 1.4042 -2.4425 0.0834 20 6 1.9498 -3.6834 0.2040 21 8 0.9308 -4.5564 0.2478 22 6 -0.2154 -3.8684 0.1480 23 6 -1.5971 -4.4697 0.1511 24 9 -1.9788 -4.7683 -1.1613 25 9 -1.5936 -5.6425 0.9140 26 9 -2.5018 -3.5568 0.7036 27 7 0.0533 -2.6010 0.0488 28 1 -0.3634 -0.1014 -1.0226 29 1 -0.3633 -0.8350 0.5992 30 1 -0.3634 0.9364 0.4235 31 1 3.1499 1.1385 0.5138 32 1 1.6083 2.0284 0.5138 33 1 4.0872 0.5461 -1.7126 34 1 4.2061 2.8838 -1.0084 35 1 2.6709 3.7709 -0.8530 36 1 2.9864 3.0049 -3.5529 37 1 4.8481 6.6144 -5.5202 38 1 3.0022 -3.9206 0.2569 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284430563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:26 Heat of formation + Delta-G solvation = -196.207790 kcal Electronic energy + Delta-G solvation = -29213.635908 eV Core-core repulsion = 24257.839557 eV Total energy + Delta-G solvation = -4955.796350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.52374 -49.03782 -49.02888 -44.99439 -41.02740 -38.77175 -36.82568 -36.30125 -35.84471 -33.49724 -32.76980 -31.21796 -28.23204 -28.14571 -27.28997 -25.28832 -23.93663 -23.38699 -22.74333 -21.45281 -20.01007 -19.81557 -19.80794 -19.56007 -18.57990 -18.16681 -17.82940 -17.65814 -17.01078 -16.66472 -16.42678 -16.19319 -15.82422 -15.79893 -15.39836 -15.39286 -15.16738 -15.12300 -15.11280 -15.01028 -14.62280 -14.34224 -14.14187 -13.98767 -13.82048 -13.70373 -13.27065 -12.95762 -12.85673 -12.66493 -12.29810 -11.97152 -11.90916 -11.86468 -11.36771 -11.11381 -11.01303 -10.73030 -9.65085 -9.32566 -8.05492 -5.38281 -0.38410 0.29410 0.30440 1.36560 1.37673 1.38981 1.47348 1.77532 2.00683 2.02830 2.46109 2.83557 2.90360 3.09434 3.24935 3.35089 3.43861 3.64971 3.82402 3.96394 4.06620 4.18883 4.22973 4.31261 4.41052 4.51934 4.68290 4.76623 4.91368 5.08294 5.19544 5.38772 5.72206 5.74896 6.18644 6.20006 6.77836 6.92146 7.05569 7.82324 8.00011 9.15837 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.002375 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.277950 B =11786.779059 C =12152.837290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.591 5.591 3 C 0.094 3.906 4 C 0.092 3.908 5 H 0.094 0.906 6 O -0.568 6.568 7 C 0.126 3.874 8 N -0.756 5.756 9 C -0.234 4.234 10 H 0.061 0.939 11 C -0.062 4.062 12 N -0.982 5.982 13 Si 0.954 3.046 14 H -0.276 1.276 15 H -0.294 1.294 16 H -0.261 1.261 17 C 0.599 3.401 18 O -0.550 6.550 19 C -0.091 4.091 20 C 0.085 3.915 21 O -0.163 6.163 22 C 0.086 3.914 23 C 0.595 3.405 24 F -0.154 7.154 25 F -0.152 7.152 26 F -0.142 7.142 27 N -0.397 5.397 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.381 0.619 34 H 0.030 0.970 35 H 0.048 0.952 36 H 0.365 0.635 37 H 0.259 0.741 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.121 -27.920 16.070 35.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.321 5.321 3 C -0.029 4.029 4 C 0.031 3.969 5 H 0.112 0.888 6 O -0.374 6.374 7 C -0.001 4.001 8 N -0.401 5.401 9 C -0.365 4.365 10 H 0.079 0.921 11 C -0.254 4.254 12 N -0.632 5.632 13 Si 0.781 3.219 14 H -0.202 1.202 15 H -0.221 1.221 16 H -0.186 1.186 17 C 0.387 3.613 18 O -0.428 6.428 19 C -0.213 4.213 20 C 0.010 3.990 21 O -0.046 6.046 22 C -0.124 4.124 23 C 0.539 3.461 24 F -0.135 7.135 25 F -0.133 7.133 26 F -0.123 7.123 27 N -0.129 5.129 28 H 0.069 0.931 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.139 0.861 33 H 0.229 0.771 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.198 0.802 37 H 0.067 0.933 38 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -15.441 -27.327 15.681 35.087 hybrid contribution 0.657 -0.385 -0.813 1.114 sum -14.784 -27.712 14.868 34.751 Atomic orbital electron populations 1.22356 0.76856 1.05130 1.02850 1.47570 1.08547 1.05001 1.70998 1.22238 0.99293 0.85139 0.96246 1.22470 0.94613 0.86277 0.93498 0.88778 1.86499 1.33830 1.59302 1.57793 1.21442 0.98169 0.94519 0.85955 1.42641 1.68916 1.24240 1.04336 1.19069 1.27133 0.97093 0.93217 0.92091 1.25462 1.01658 0.98358 0.99886 1.69865 1.49592 1.23432 1.20349 0.85425 0.78084 0.79261 0.79115 1.20173 1.22091 1.18590 1.16806 0.85835 0.82228 0.76476 1.90799 1.13392 1.86872 1.51786 1.21880 0.88621 0.96537 1.14237 1.26383 0.94485 0.85360 0.92737 1.84447 1.14164 1.38490 1.67463 1.25794 0.89382 0.87254 1.09969 1.15805 0.79552 0.75693 0.75023 1.93335 1.91448 1.93012 1.35685 1.93323 1.96439 1.47998 1.75507 1.93327 1.67212 1.66605 1.85175 1.70866 1.14828 1.14996 1.12205 0.93134 0.88146 0.88980 0.89176 0.86140 0.77063 0.95157 0.93448 0.80155 0.93263 0.70459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 9.68 127.77 1.24 2.42 16 2 N -0.59 -12.59 2.83 -850.64 -2.41 -15.00 16 3 C 0.09 2.03 5.18 86.38 0.45 2.48 16 4 C 0.09 2.69 3.27 30.59 0.10 2.79 16 5 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 6 O -0.57 -19.11 12.01 -136.78 -1.64 -20.75 16 7 C 0.13 4.59 5.90 86.38 0.51 5.10 16 8 N -0.76 -36.24 5.35 -343.46 -1.84 -38.08 16 9 C -0.23 -13.61 10.47 84.03 0.88 -12.73 16 10 H 0.06 3.82 8.06 -2.91 -0.02 3.80 16 11 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 12 N -0.98 -63.83 13.97 21.65 0.30 -63.53 16 13 Si 0.95 47.41 27.74 68.60 1.90 49.31 16 14 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 15 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 16 H -0.26 -12.31 6.52 99.48 0.65 -11.66 16 17 C 0.60 13.92 7.23 86.66 0.63 14.55 16 18 O -0.55 -15.02 15.05 8.12 0.12 -14.90 16 19 C -0.09 -1.69 6.67 40.41 0.27 -1.42 16 20 C 0.08 1.03 11.95 67.32 0.80 1.83 16 21 O -0.16 -2.09 10.70 0.38 0.00 -2.09 16 22 C 0.09 1.27 7.53 88.39 0.67 1.94 16 23 C 0.60 7.41 3.57 71.24 0.25 7.67 16 24 F -0.15 -2.08 17.30 44.97 0.78 -1.30 16 25 F -0.15 -1.73 17.28 44.97 0.78 -0.96 16 26 F -0.14 -1.84 17.23 44.97 0.77 -1.07 16 27 N -0.40 -7.05 7.75 -293.03 -2.27 -9.32 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.10 1.66 5.25 -2.38 -0.01 1.65 16 30 H 0.09 1.15 7.83 -2.38 -0.02 1.14 16 31 H 0.09 2.01 7.48 -2.39 -0.02 1.99 16 32 H 0.12 1.94 7.86 -2.38 -0.02 1.92 16 33 H 0.38 11.93 8.34 -74.05 -0.62 11.32 16 34 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.37 17.45 5.53 -92.71 -0.51 16.94 16 37 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 38 H 0.28 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -75.56 344.15 2.73 -72.82 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -0.03 Total: 23.51 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: 6.26 Total: 21.36 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -6.21 Total: -125.93 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.52 Total: -37.74 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 2.33 Total: -3.33 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.90 Total: 49.31 kcal Total: -75.56 2.73 -72.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284430563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.385 kcal (2) G-P(sol) polarization free energy of solvation -75.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds