Wall clock time and date at job start Tue Mar 31 2020 19:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34779 * 119.99943 * 154.99835 * 11 9 7 13 13 O 1.21283 * 120.00516 * 0.02562 * 12 11 9 14 14 C 1.50709 * 119.99796 * 180.02562 * 12 11 9 15 15 C 1.53001 * 109.46716 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.46639 * 179.97438 * 15 14 12 17 17 N 1.46504 * 109.46964 * 180.02562 * 16 15 14 18 18 C 1.34773 * 124.17313 * 269.72244 * 17 16 15 19 19 O 1.21235 * 127.15527 * 359.97438 * 18 17 16 20 20 C 1.51576 * 105.68455 * 179.97438 * 18 17 16 21 21 N 1.47312 * 103.59370 * 0.31835 * 20 18 17 22 22 C 1.33784 * 124.18414 * 90.02167 * 17 16 15 23 23 O 1.21540 * 123.76984 * 359.96312 * 22 17 16 24 24 C 1.53000 * 109.47355 * 60.00012 * 9 7 2 25 25 F 1.39897 * 109.46935 * 59.99980 * 24 9 7 26 26 F 1.39899 * 109.47307 * 180.02562 * 24 9 7 27 27 F 1.39901 * 109.47163 * 300.00307 * 24 9 7 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 0.96997 * 120.00208 * 335.00126 * 11 9 7 30 30 H 1.08998 * 109.46848 * 299.99555 * 14 12 11 31 31 H 1.08995 * 109.47381 * 59.99830 * 14 12 11 32 32 H 1.09000 * 109.47282 * 299.99596 * 15 14 12 33 33 H 1.09000 * 109.47246 * 59.99983 * 15 14 12 34 34 H 1.08998 * 109.46914 * 299.99267 * 16 15 14 35 35 H 1.08995 * 109.47392 * 59.99589 * 16 15 14 36 36 H 1.09004 * 110.76222 * 241.71544 * 20 18 17 37 37 H 1.08996 * 110.56638 * 118.83150 * 20 18 17 38 38 H 0.97001 * 126.69176 * 179.76988 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 0.4928 13 8 0.7191 -4.9701 0.9363 14 6 2.8164 -5.9576 0.4933 15 6 2.1537 -7.1950 1.1023 16 6 3.1480 -8.3579 1.1022 17 7 2.5134 -9.5430 1.6848 18 6 2.5475 -9.8525 2.9960 19 8 3.0889 -9.2270 3.8822 20 6 1.7682 -11.1455 3.1322 21 7 1.3525 -11.4463 1.7513 22 6 1.8333 -10.4545 0.9801 23 8 1.6696 -10.3941 -0.2227 24 6 0.3709 -2.5799 -1.2494 25 9 1.1748 -2.5056 -2.3920 26 9 -0.3290 -3.7912 -1.2491 27 9 -0.5381 -1.5165 -1.2489 28 1 -0.4850 0.8401 0.0004 29 1 3.0968 -3.4866 -0.3555 30 1 3.1209 -6.1757 -0.5303 31 1 3.6920 -5.6866 1.0830 32 1 1.8489 -6.9772 2.1259 33 1 1.2782 -7.4659 0.5122 34 1 3.4524 -8.5756 0.0785 35 1 4.0238 -8.0873 1.6919 36 1 0.8975 -11.0062 3.7731 37 1 2.4068 -11.9382 3.5218 38 1 0.8333 -12.2105 1.4558 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001303849901.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:25 Heat of formation + Delta-G solvation = -220.244884 kcal Electronic energy + Delta-G solvation = -29667.310924 eV Core-core repulsion = 24710.472247 eV Total energy + Delta-G solvation = -4956.838677 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.33863 -45.99488 -45.60246 -42.58174 -39.07463 -38.83524 -36.36990 -35.91866 -34.65930 -32.87942 -32.51002 -29.00084 -28.11608 -26.91315 -24.56721 -23.27398 -22.95112 -21.25776 -20.57055 -19.76029 -18.37156 -17.52665 -17.37391 -16.98044 -16.82579 -16.63287 -16.44711 -15.78854 -15.61289 -15.54132 -15.40831 -14.84999 -14.48468 -14.39426 -14.08912 -13.95572 -13.56782 -13.13098 -12.91976 -12.70299 -12.41587 -12.35988 -12.26455 -12.04103 -11.96232 -11.81706 -11.75469 -11.21045 -11.13077 -10.87391 -10.85356 -10.75289 -10.52953 -10.41203 -10.06305 -9.85128 -9.67996 -9.20928 -8.72423 -8.26089 -6.23827 -4.48176 1.32337 1.89545 2.71496 2.79964 3.18851 3.22611 3.25130 3.26162 3.64205 3.82275 4.20890 4.42640 4.56912 4.57601 4.76320 4.87588 4.91198 4.93088 5.14033 5.20205 5.36364 5.43445 5.56222 5.71052 5.87739 5.88489 6.05746 6.22848 6.27535 6.38754 6.74226 6.94254 7.05918 7.17877 7.46715 7.62788 7.81200 8.32606 8.49225 8.89669 9.19809 10.67732 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.022460 B = 0.002591 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.338784 B =10805.175870 C =11395.356397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.283 1.283 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.245 3.755 10 H 0.084 0.916 11 N -0.713 5.713 12 C 0.505 3.495 13 O -0.537 6.537 14 C -0.136 4.136 15 C -0.119 4.119 16 C 0.118 3.882 17 N -0.575 5.575 18 C 0.519 3.481 19 O -0.466 6.466 20 C 0.062 3.938 21 N -0.731 5.731 22 C 0.700 3.300 23 O -0.538 6.538 24 C 0.417 3.583 25 F -0.209 7.209 26 F -0.218 7.218 27 F -0.137 7.137 28 H 0.269 0.731 29 H 0.399 0.601 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.440 -19.887 4.575 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.590 4.590 8 H 0.095 0.905 9 C 0.139 3.861 10 H 0.102 0.898 11 N -0.362 5.362 12 C 0.290 3.710 13 O -0.414 6.414 14 C -0.177 4.177 15 C -0.158 4.158 16 C -0.003 4.003 17 N -0.321 5.321 18 C 0.306 3.694 19 O -0.335 6.335 20 C -0.066 4.066 21 N -0.397 5.397 22 C 0.401 3.599 23 O -0.410 6.410 24 C 0.360 3.640 25 F -0.191 7.191 26 F -0.200 7.200 27 F -0.118 7.118 28 H 0.079 0.921 29 H 0.233 0.767 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 5.683 -19.381 4.690 20.734 hybrid contribution 0.365 0.581 -0.605 0.915 sum 6.048 -18.800 4.084 20.167 Atomic orbital electron populations 1.70395 1.05878 1.27484 1.43529 1.25095 0.95158 1.00151 0.94034 0.86267 0.79333 0.81305 0.78907 1.20875 1.19774 1.19815 1.20847 0.93746 0.88164 1.56278 0.90487 1.19701 0.88801 0.85957 0.91655 0.89808 1.46083 1.17163 1.10700 1.62259 1.20512 0.88573 0.83914 0.77998 1.90703 1.21508 1.83034 1.46192 1.21525 0.99030 0.93708 1.03396 1.21647 0.98590 0.92371 1.03211 1.21809 0.95925 0.82104 1.00427 1.46390 1.50990 1.24706 1.09986 1.20900 0.79693 0.86631 0.82148 1.90848 1.43052 1.56167 1.43463 1.22470 1.01427 0.96637 0.86035 1.45428 1.59317 1.27429 1.07496 1.15896 0.78587 0.80086 0.85371 1.91048 1.61865 1.77098 1.11036 1.23146 0.80900 0.72792 0.87132 1.92986 1.74437 1.96185 1.55528 1.93071 1.81470 1.48451 1.96973 1.93403 1.68418 1.53807 1.96202 0.92055 0.76733 0.88741 0.88706 0.90500 0.90237 0.88351 0.88498 0.85813 0.85963 0.71476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.16 9.50 55.43 0.53 -22.63 16 2 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 3 Si 0.92 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.55 -14.10 8.46 -34.44 -0.29 -14.39 16 8 H 0.08 1.83 7.74 -52.49 -0.41 1.43 16 9 C 0.24 6.08 2.21 -69.09 -0.15 5.93 16 10 H 0.08 2.34 7.58 -51.92 -0.39 1.95 16 11 N -0.71 -14.27 4.99 -54.93 -0.27 -14.54 16 12 C 0.50 9.63 7.36 -10.98 -0.08 9.55 16 13 O -0.54 -12.51 14.55 5.56 0.08 -12.43 16 14 C -0.14 -1.75 5.70 -27.88 -0.16 -1.91 16 15 C -0.12 -1.55 4.83 -26.73 -0.13 -1.68 16 16 C 0.12 1.19 5.70 -4.04 -0.02 1.17 16 17 N -0.57 -5.79 2.60 -120.73 -0.31 -6.11 16 18 C 0.52 4.67 8.32 -10.56 -0.09 4.58 16 19 O -0.47 -5.60 17.75 5.60 0.10 -5.50 16 20 C 0.06 0.27 7.97 -4.32 -0.03 0.23 16 21 N -0.73 -4.35 6.58 -65.74 -0.43 -4.78 16 22 C 0.70 7.36 8.62 -88.03 -0.76 6.60 16 23 O -0.54 -7.77 17.48 5.33 0.09 -7.67 16 24 C 0.42 10.80 2.81 37.16 0.10 10.90 16 25 F -0.21 -5.21 16.94 2.25 0.04 -5.17 16 26 F -0.22 -5.63 15.68 2.25 0.04 -5.60 16 27 F -0.14 -3.84 12.91 2.25 0.03 -3.81 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.40 6.74 8.54 -40.82 -0.35 6.39 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 33 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 34 H 0.10 0.92 7.86 -51.93 -0.41 0.52 16 35 H 0.10 0.83 8.00 -51.93 -0.42 0.42 16 36 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.12 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.44 1.54 8.96 -40.82 -0.37 1.18 16 LS Contribution 342.79 15.07 5.17 5.17 Total: -1.00 -35.65 342.79 -5.68 -41.33 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.00 Total: 4.11 kcal Atomic # 6 Polarization: 24.28 SS G_CDS: -1.71 Total: 22.57 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.49 Total: -48.06 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: 0.27 Total: -25.61 kcal Atomic # 9 Polarization: -14.69 SS G_CDS: 0.10 Total: -14.58 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.65 -5.68 -41.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001303849901.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.914 kcal (2) G-P(sol) polarization free energy of solvation -35.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds