Wall clock time and date at job start Tue Mar 31 2020 19:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34779 * 119.99943 * 154.99835 * 11 9 7 13 13 O 1.21283 * 120.00516 * 0.02562 * 12 11 9 14 14 C 1.50709 * 119.99796 * 180.02562 * 12 11 9 15 15 C 1.53001 * 109.46716 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.46639 * 179.97438 * 15 14 12 17 17 N 1.46504 * 109.46964 * 180.02562 * 16 15 14 18 18 C 1.34773 * 124.17313 * 269.72244 * 17 16 15 19 19 O 1.21235 * 127.15527 * 359.97438 * 18 17 16 20 20 C 1.51576 * 105.68455 * 179.97438 * 18 17 16 21 21 N 1.47312 * 103.59370 * 0.31835 * 20 18 17 22 22 C 1.33784 * 124.18414 * 90.02167 * 17 16 15 23 23 O 1.21540 * 123.76984 * 359.96312 * 22 17 16 24 24 C 1.53000 * 109.47355 * 60.00012 * 9 7 2 25 25 F 1.39897 * 109.46935 * 59.99980 * 24 9 7 26 26 F 1.39899 * 109.47307 * 180.02562 * 24 9 7 27 27 F 1.39901 * 109.47163 * 300.00307 * 24 9 7 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 0.96997 * 120.00208 * 335.00126 * 11 9 7 30 30 H 1.08998 * 109.46848 * 299.99555 * 14 12 11 31 31 H 1.08995 * 109.47381 * 59.99830 * 14 12 11 32 32 H 1.09000 * 109.47282 * 299.99596 * 15 14 12 33 33 H 1.09000 * 109.47246 * 59.99983 * 15 14 12 34 34 H 1.08998 * 109.46914 * 299.99267 * 16 15 14 35 35 H 1.08995 * 109.47392 * 59.99589 * 16 15 14 36 36 H 1.09004 * 110.76222 * 241.71544 * 20 18 17 37 37 H 1.08996 * 110.56638 * 118.83150 * 20 18 17 38 38 H 0.97001 * 126.69176 * 179.76988 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 0.4928 13 8 0.7191 -4.9701 0.9363 14 6 2.8164 -5.9576 0.4933 15 6 2.1537 -7.1950 1.1023 16 6 3.1480 -8.3579 1.1022 17 7 2.5134 -9.5430 1.6848 18 6 2.5475 -9.8525 2.9960 19 8 3.0889 -9.2270 3.8822 20 6 1.7682 -11.1455 3.1322 21 7 1.3525 -11.4463 1.7513 22 6 1.8333 -10.4545 0.9801 23 8 1.6696 -10.3941 -0.2227 24 6 0.3709 -2.5799 -1.2494 25 9 1.1748 -2.5056 -2.3920 26 9 -0.3290 -3.7912 -1.2491 27 9 -0.5381 -1.5165 -1.2489 28 1 -0.4850 0.8401 0.0004 29 1 3.0968 -3.4866 -0.3555 30 1 3.1209 -6.1757 -0.5303 31 1 3.6920 -5.6866 1.0830 32 1 1.8489 -6.9772 2.1259 33 1 1.2782 -7.4659 0.5122 34 1 3.4524 -8.5756 0.0785 35 1 4.0238 -8.0873 1.6919 36 1 0.8975 -11.0062 3.7731 37 1 2.4068 -11.9382 3.5218 38 1 0.8333 -12.2105 1.4558 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001303849901.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:25 Heat of formation + Delta-G solvation = -248.496221 kcal Electronic energy + Delta-G solvation = -29668.535994 eV Core-core repulsion = 24710.472247 eV Total energy + Delta-G solvation = -4958.063747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.43874 -48.07665 -47.74752 -43.28895 -40.65657 -39.63807 -37.17512 -36.89342 -36.35099 -34.47918 -33.79443 -30.64507 -28.85518 -27.94865 -26.58730 -24.38187 -23.82814 -22.93820 -21.38207 -21.33859 -19.39264 -19.01685 -18.88117 -18.68107 -18.23689 -18.06387 -17.74363 -17.34498 -16.88271 -16.58610 -16.52578 -16.24561 -15.74752 -15.27769 -15.04673 -15.01227 -14.89356 -14.87396 -14.62302 -14.49402 -14.33212 -14.26315 -14.04752 -13.87536 -13.53226 -13.12472 -12.96209 -12.85523 -12.71780 -12.60224 -12.22855 -12.03564 -11.85948 -11.60870 -11.30848 -10.98229 -10.78552 -10.68507 -10.39904 -10.05332 -8.21980 -6.53334 0.63386 1.21166 1.46375 1.48652 1.57308 1.69274 1.93816 2.22813 2.31565 2.41168 2.53814 2.93220 3.07881 3.64374 3.76377 3.78666 3.86012 3.89409 4.13024 4.15637 4.31488 4.33944 4.42654 4.46771 4.63684 4.68119 4.72258 4.94405 5.03870 5.19892 5.43031 5.55023 5.64488 5.85151 6.05468 6.40148 6.51872 6.74646 7.11559 7.16483 7.39678 8.70620 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.022460 B = 0.002591 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.338784 B =10805.175870 C =11395.356397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.013 3.987 3 Si 0.984 3.016 4 H -0.286 1.286 5 H -0.261 1.261 6 H -0.265 1.265 7 C -0.563 4.563 8 H 0.095 0.905 9 C 0.251 3.749 10 H 0.044 0.956 11 N -0.706 5.706 12 C 0.496 3.504 13 O -0.586 6.586 14 C -0.122 4.122 15 C -0.111 4.111 16 C 0.121 3.879 17 N -0.582 5.582 18 C 0.513 3.487 19 O -0.501 6.501 20 C 0.073 3.927 21 N -0.711 5.711 22 C 0.693 3.307 23 O -0.586 6.586 24 C 0.412 3.588 25 F -0.202 7.202 26 F -0.221 7.221 27 F -0.152 7.152 28 H 0.268 0.732 29 H 0.416 0.584 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.152 0.848 37 H 0.163 0.837 38 H 0.454 0.546 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.687 -21.069 5.113 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.211 1.211 5 H -0.186 1.186 6 H -0.189 1.189 7 C -0.599 4.599 8 H 0.113 0.887 9 C 0.143 3.857 10 H 0.061 0.939 11 N -0.358 5.358 12 C 0.285 3.715 13 O -0.466 6.466 14 C -0.162 4.162 15 C -0.150 4.150 16 C 0.000 4.000 17 N -0.327 5.327 18 C 0.302 3.698 19 O -0.373 6.373 20 C -0.053 4.053 21 N -0.376 5.376 22 C 0.393 3.607 23 O -0.463 6.463 24 C 0.356 3.644 25 F -0.184 7.184 26 F -0.203 7.203 27 F -0.133 7.133 28 H 0.078 0.922 29 H 0.253 0.747 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.169 0.831 37 H 0.181 0.819 38 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 7.959 -20.627 5.248 22.724 hybrid contribution -0.389 0.878 -0.739 1.212 sum 7.570 -19.749 4.509 21.626 Atomic orbital electron populations 1.70537 1.07591 1.28211 1.44704 1.26046 0.95894 1.03853 0.93444 0.85197 0.77975 0.76639 0.79440 1.21135 1.18564 1.18949 1.21234 0.94634 0.88326 1.55725 0.88721 1.19281 0.89068 0.87865 0.89480 0.93855 1.45970 1.17164 1.10029 1.62587 1.21654 0.88988 0.84638 0.76262 1.90682 1.24082 1.83776 1.48070 1.21564 0.98097 0.90602 1.05932 1.21513 0.98444 0.93773 1.01249 1.21758 0.95419 0.81258 1.01582 1.46504 1.50937 1.24569 1.10726 1.21642 0.79268 0.87730 0.81135 1.90832 1.44744 1.57650 1.44065 1.22730 1.02391 0.95039 0.85157 1.45408 1.58045 1.26459 1.07724 1.16114 0.78686 0.80842 0.85047 1.91012 1.63806 1.78318 1.13121 1.23363 0.80882 0.72292 0.87853 1.92984 1.74111 1.96142 1.55177 1.93061 1.81640 1.48542 1.97028 1.93374 1.69040 1.54557 1.96325 0.92203 0.74674 0.85807 0.84948 0.92554 0.93328 0.87490 0.86542 0.83064 0.81942 0.69918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.25 9.50 21.45 0.20 -49.04 16 2 C 0.01 0.66 5.20 84.66 0.44 1.10 16 3 Si 0.98 40.59 29.54 68.60 2.03 42.62 16 4 H -0.29 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.56 -28.45 8.46 25.60 0.22 -28.23 16 8 H 0.09 4.34 7.74 -2.91 -0.02 4.32 16 9 C 0.25 12.68 2.21 44.24 0.10 12.77 16 10 H 0.04 2.55 7.58 -2.38 -0.02 2.53 16 11 N -0.71 -27.99 4.99 -446.09 -2.22 -30.22 16 12 C 0.50 18.93 7.36 87.66 0.65 19.57 16 13 O -0.59 -28.30 14.55 -3.04 -0.04 -28.34 16 14 C -0.12 -2.93 5.70 29.85 0.17 -2.76 16 15 C -0.11 -2.86 4.83 30.60 0.15 -2.71 16 16 C 0.12 2.29 5.70 86.38 0.49 2.78 16 17 N -0.58 -11.12 2.60 -773.13 -2.01 -13.14 16 18 C 0.51 8.35 8.32 87.94 0.73 9.08 16 19 O -0.50 -11.47 17.75 -2.89 -0.05 -11.52 16 20 C 0.07 0.39 7.97 85.76 0.68 1.08 16 21 N -0.71 -6.81 6.58 -480.33 -3.16 -9.97 16 22 C 0.69 13.93 8.62 179.44 1.55 15.48 16 23 O -0.59 -16.99 17.48 -3.84 -0.07 -17.05 16 24 C 0.41 21.79 2.81 71.98 0.20 21.99 16 25 F -0.20 -10.03 16.94 44.97 0.76 -9.27 16 26 F -0.22 -11.73 15.68 44.97 0.70 -11.02 16 27 F -0.15 -8.74 12.91 44.97 0.58 -8.16 16 28 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.42 13.33 8.54 -92.71 -0.79 12.54 16 30 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 33 H 0.05 1.54 8.10 -2.39 -0.02 1.53 16 34 H 0.11 1.85 7.86 -2.39 -0.02 1.84 16 35 H 0.12 1.75 8.00 -2.39 -0.02 1.73 16 36 H 0.15 0.17 8.14 -2.38 -0.02 0.15 16 37 H 0.16 -0.25 8.14 -2.39 -0.02 -0.27 16 38 H 0.45 2.05 8.96 -92.71 -0.83 1.22 16 Total: -1.00 -81.65 342.79 1.62 -80.03 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -0.47 Total: 14.93 kcal Atomic # 6 Polarization: 44.78 SS G_CDS: 5.38 Total: 50.16 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -7.20 Total: -102.37 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -0.16 Total: -56.92 kcal Atomic # 9 Polarization: -30.50 SS G_CDS: 2.05 Total: -28.45 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -81.65 1.62 -80.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001303849901.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.465 kcal (2) G-P(sol) polarization free energy of solvation -81.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds