Wall clock time and date at job start Tue Mar 31 2020 19:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99978 * 2 1 4 4 H 1.48503 * 109.47265 * 270.00245 * 3 2 1 5 5 H 1.48508 * 109.47229 * 30.00140 * 3 2 1 6 6 H 1.48497 * 109.47421 * 150.00303 * 3 2 1 7 7 C 1.37874 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99961 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00283 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47055 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.46664 * 180.02562 * 10 9 7 12 12 O 1.42098 * 110.54880 * 68.37659 * 11 10 9 13 13 O 1.42105 * 110.54286 * 291.62273 * 11 10 9 14 14 N 1.65605 * 104.44774 * 180.02562 * 11 10 9 15 15 C 1.46502 * 119.99976 * 64.99801 * 14 11 10 16 16 C 1.50698 * 109.47254 * 165.00046 * 15 14 11 17 17 C 1.38792 * 120.75849 * 89.99560 * 16 15 14 18 18 C 1.38135 * 119.29463 * 179.97438 * 17 16 15 19 19 N 1.31893 * 120.83810 * 359.97438 * 18 17 16 20 20 C 1.32308 * 121.64880 * 0.02562 * 19 18 17 21 21 N 1.39853 * 119.68085 * 179.97438 * 20 19 18 22 22 C 1.34800 * 126.85218 * 0.02562 * 21 20 19 23 23 N 1.30809 * 108.02066 * 179.97438 * 22 21 20 24 24 C 1.33285 * 109.85011 * 0.02562 * 23 22 21 25 25 N 1.30711 * 109.01525 * 359.73919 * 24 23 22 26 26 C 1.38420 * 120.75920 * 269.97849 * 16 15 14 27 27 H 0.96998 * 120.00283 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46868 * 59.99722 * 9 7 2 29 29 H 1.08995 * 109.46987 * 300.00252 * 9 7 2 30 30 H 1.08999 * 109.47253 * 60.00272 * 10 9 7 31 31 H 1.08996 * 109.47028 * 299.99781 * 10 9 7 32 32 H 0.96994 * 120.00010 * 244.99342 * 14 11 10 33 33 H 1.08997 * 109.47245 * 45.00253 * 15 14 11 34 34 H 1.09001 * 109.47371 * 284.99992 * 15 14 11 35 35 H 1.07998 * 120.35354 * 0.02562 * 17 16 15 36 36 H 1.07988 * 119.57951 * 179.72379 * 18 17 16 37 37 H 1.08008 * 125.98931 * 359.97438 * 22 21 20 38 38 H 1.08008 * 125.49330 * 180.02562 * 24 23 22 39 39 H 1.08004 * 120.44701 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 16 1.3382 -5.2330 -0.0026 12 8 0.6637 -5.4188 -1.2394 13 8 0.6648 -5.4206 1.2346 14 7 2.5204 -6.3927 -0.0032 15 6 3.4189 -6.5234 1.1465 16 6 4.1390 -7.8453 1.0736 17 6 5.3543 -7.9560 0.4126 18 6 5.9885 -9.1823 0.3648 19 7 5.4537 -10.2428 0.9383 20 6 4.2971 -10.1773 1.5775 21 7 3.7674 -11.3279 2.1703 22 6 4.3139 -12.5601 2.1743 23 7 3.5114 -13.3566 2.8322 24 6 2.4489 -12.6755 3.2606 25 7 2.5624 -11.4287 2.8849 26 6 3.6035 -8.9766 1.6646 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8726 -3.6047 0.8877 31 1 2.8712 -3.6039 -0.8923 32 1 2.6179 -6.9854 -0.7648 33 1 2.8389 -6.4761 2.0681 34 1 4.1467 -5.7121 1.1331 35 1 5.8000 -7.0925 -0.0586 36 1 6.9321 -9.2746 -0.1520 37 1 5.2502 -12.8407 1.7148 38 1 1.6287 -13.0864 3.8307 39 1 2.6599 -8.9264 2.1877 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309757838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:42 Heat of formation + Delta-G solvation = 60.116484 kcal Electronic energy + Delta-G solvation = -25348.377618 eV Core-core repulsion = 21420.598684 eV Total energy + Delta-G solvation = -3927.778933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.75234 -40.77435 -36.78040 -36.27562 -35.52875 -34.53079 -33.95820 -32.60260 -31.67215 -31.23081 -30.43431 -26.82600 -25.67081 -24.88057 -23.69209 -22.03850 -21.78150 -21.56325 -19.17267 -18.76232 -17.54719 -17.20023 -16.67712 -16.47745 -16.41476 -16.14306 -15.74857 -15.49196 -14.93428 -14.76565 -14.60297 -14.50512 -14.30793 -13.83574 -13.41526 -13.21453 -12.62865 -12.58932 -12.45686 -11.84131 -11.82426 -11.69115 -11.60885 -11.39882 -11.13114 -11.02598 -10.61944 -10.49451 -10.45208 -10.33800 -10.29537 -10.25445 -9.91852 -9.63513 -9.14065 -9.12129 -8.55323 -6.17351 -4.23391 0.07012 0.44822 0.77139 1.44683 1.49840 2.47169 2.96832 3.22309 3.28774 3.29297 3.31131 3.62536 3.83787 3.96726 4.11948 4.15711 4.32743 4.42279 4.48988 4.61369 4.62855 4.81222 5.00902 5.05385 5.17878 5.25631 5.31780 5.45103 5.56636 5.66272 5.72070 5.76817 5.88200 5.94995 6.39818 6.43486 6.87326 7.08434 7.23900 7.29661 7.59274 7.75094 8.11403 8.79956 9.41684 10.93607 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.023024 B = 0.002206 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.843785 B =12688.701002 C =13307.352604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.588 4.588 11 S 2.591 3.409 12 O -0.963 6.963 13 O -0.963 6.963 14 N -1.125 6.125 15 C 0.154 3.846 16 C -0.027 4.027 17 C -0.161 4.161 18 C 0.133 3.867 19 N -0.500 5.500 20 C 0.357 3.643 21 N -0.333 5.333 22 C 0.290 3.710 23 N -0.541 5.541 24 C 0.214 3.786 25 N -0.305 5.305 26 C -0.137 4.137 27 H 0.266 0.734 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.414 0.586 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.151 0.849 36 H 0.173 0.827 37 H 0.227 0.773 38 H 0.227 0.773 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.489 -21.442 2.599 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.721 4.721 11 S 2.689 3.311 12 O -0.953 6.953 13 O -0.953 6.953 14 N -0.881 5.881 15 C 0.027 3.973 16 C -0.037 4.037 17 C -0.182 4.182 18 C -0.025 4.025 19 N -0.214 5.214 20 C 0.129 3.871 21 N -0.119 5.119 22 C -0.006 4.006 23 N -0.267 5.267 24 C -0.089 4.089 25 N -0.131 5.131 26 C -0.160 4.160 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.247 0.753 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.169 0.831 36 H 0.190 0.810 37 H 0.244 0.756 38 H 0.243 0.757 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.296 -22.005 2.970 25.381 hybrid contribution 0.908 1.698 -0.420 1.971 sum 13.203 -20.307 2.550 24.356 Atomic orbital electron populations 1.69949 1.06120 1.27273 1.49389 1.25075 0.94988 0.99590 0.94878 0.86460 0.79675 0.82834 0.78239 1.20464 1.20994 1.19776 1.20981 0.93032 0.89719 1.52348 0.92027 1.18975 0.92701 0.90522 0.98992 1.30440 1.13736 1.17810 1.10139 1.05692 0.74619 0.76592 0.74231 1.93567 1.71269 1.85292 1.45204 1.93552 1.71210 1.84909 1.45644 1.55909 1.52781 1.52692 1.26767 1.20233 0.93154 0.93336 0.90541 1.20244 0.94099 0.95125 0.94202 1.22261 0.95623 1.00093 1.00217 1.22559 0.98963 0.86558 0.94422 1.66821 1.09854 1.34162 1.10531 1.17630 0.90927 0.84047 0.94468 1.47530 1.16654 1.07550 1.40133 1.26410 0.99292 0.80366 0.94548 1.70724 1.04916 1.33374 1.17684 1.26319 0.97491 0.87279 0.97823 1.78264 0.98934 1.21112 1.14745 1.21690 1.02063 0.90567 1.01660 0.92474 0.94796 0.94740 0.86218 0.85959 0.75305 0.88463 0.89591 0.83118 0.80981 0.75646 0.75657 0.82797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.52 -13.91 9.11 -34.44 -0.31 -14.22 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.66 4.98 -27.88 -0.14 0.53 16 10 C -0.59 -10.23 6.01 37.16 0.22 -10.01 16 11 S 2.59 42.58 5.46 -107.50 -0.59 41.99 16 12 O -0.96 -19.02 18.08 -57.54 -1.04 -20.06 16 13 O -0.96 -18.80 17.49 -57.54 -1.01 -19.80 16 14 N -1.12 -12.62 5.88 -11.66 -0.07 -12.69 16 15 C 0.15 1.41 6.30 -5.19 -0.03 1.37 16 16 C -0.03 -0.22 5.31 -104.35 -0.55 -0.78 16 17 C -0.16 -0.99 9.81 -39.41 -0.39 -1.38 16 18 C 0.13 0.81 11.18 -17.56 -0.20 0.61 16 19 N -0.50 -4.27 9.90 -12.28 -0.12 -4.39 16 20 C 0.36 3.61 7.56 -154.34 -1.17 2.44 16 21 N -0.33 -3.53 3.81 -13.34 -0.05 -3.58 16 22 C 0.29 2.62 12.26 -90.34 -1.11 1.51 16 23 N -0.54 -5.41 11.19 -15.74 -0.18 -5.59 16 24 C 0.21 1.97 13.03 -91.78 -1.20 0.77 16 25 N -0.31 -3.44 12.02 29.30 0.35 -3.09 16 26 C -0.14 -1.37 9.42 -39.26 -0.37 -1.74 16 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.12 1.79 8.14 -51.92 -0.42 1.37 16 31 H 0.12 1.88 8.14 -51.93 -0.42 1.46 16 32 H 0.41 4.01 8.61 -34.47 -0.30 3.71 16 33 H 0.10 0.95 7.65 -51.93 -0.40 0.55 16 34 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 35 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 36 H 0.17 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.23 1.30 8.06 -52.48 -0.42 0.87 16 38 H 0.23 1.17 8.06 -52.48 -0.42 0.74 16 39 H 0.15 1.67 7.73 -52.48 -0.41 1.27 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -37.74 361.34 -11.32 -49.06 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -4.44 Total: 1.65 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -5.34 Total: -19.40 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.67 Total: -54.55 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -2.05 Total: -39.87 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 42.58 SS G_CDS: -0.59 Total: 41.99 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.74 -11.32 -49.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309757838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.179 kcal (2) G-P(sol) polarization free energy of solvation -37.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds