Wall clock time and date at job start Tue Mar 31 2020 19:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99978 * 2 1 4 4 H 1.48503 * 109.47265 * 270.00245 * 3 2 1 5 5 H 1.48508 * 109.47229 * 30.00140 * 3 2 1 6 6 H 1.48497 * 109.47421 * 150.00303 * 3 2 1 7 7 C 1.37874 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99961 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00283 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47055 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.46664 * 180.02562 * 10 9 7 12 12 O 1.42098 * 110.54880 * 68.37659 * 11 10 9 13 13 O 1.42105 * 110.54286 * 291.62273 * 11 10 9 14 14 N 1.65605 * 104.44774 * 180.02562 * 11 10 9 15 15 C 1.46502 * 119.99976 * 64.99801 * 14 11 10 16 16 C 1.50698 * 109.47254 * 165.00046 * 15 14 11 17 17 C 1.38792 * 120.75849 * 89.99560 * 16 15 14 18 18 C 1.38135 * 119.29463 * 179.97438 * 17 16 15 19 19 N 1.31893 * 120.83810 * 359.97438 * 18 17 16 20 20 C 1.32308 * 121.64880 * 0.02562 * 19 18 17 21 21 N 1.39853 * 119.68085 * 179.97438 * 20 19 18 22 22 C 1.34800 * 126.85218 * 0.02562 * 21 20 19 23 23 N 1.30809 * 108.02066 * 179.97438 * 22 21 20 24 24 C 1.33285 * 109.85011 * 0.02562 * 23 22 21 25 25 N 1.30711 * 109.01525 * 359.73919 * 24 23 22 26 26 C 1.38420 * 120.75920 * 269.97849 * 16 15 14 27 27 H 0.96998 * 120.00283 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46868 * 59.99722 * 9 7 2 29 29 H 1.08995 * 109.46987 * 300.00252 * 9 7 2 30 30 H 1.08999 * 109.47253 * 60.00272 * 10 9 7 31 31 H 1.08996 * 109.47028 * 299.99781 * 10 9 7 32 32 H 0.96994 * 120.00010 * 244.99342 * 14 11 10 33 33 H 1.08997 * 109.47245 * 45.00253 * 15 14 11 34 34 H 1.09001 * 109.47371 * 284.99992 * 15 14 11 35 35 H 1.07998 * 120.35354 * 0.02562 * 17 16 15 36 36 H 1.07988 * 119.57951 * 179.72379 * 18 17 16 37 37 H 1.08008 * 125.98931 * 359.97438 * 22 21 20 38 38 H 1.08008 * 125.49330 * 180.02562 * 24 23 22 39 39 H 1.08004 * 120.44701 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 16 1.3382 -5.2330 -0.0026 12 8 0.6637 -5.4188 -1.2394 13 8 0.6648 -5.4206 1.2346 14 7 2.5204 -6.3927 -0.0032 15 6 3.4189 -6.5234 1.1465 16 6 4.1390 -7.8453 1.0736 17 6 5.3543 -7.9560 0.4126 18 6 5.9885 -9.1823 0.3648 19 7 5.4537 -10.2428 0.9383 20 6 4.2971 -10.1773 1.5775 21 7 3.7674 -11.3279 2.1703 22 6 4.3139 -12.5601 2.1743 23 7 3.5114 -13.3566 2.8322 24 6 2.4489 -12.6755 3.2606 25 7 2.5624 -11.4287 2.8849 26 6 3.6035 -8.9766 1.6646 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8726 -3.6047 0.8877 31 1 2.8712 -3.6039 -0.8923 32 1 2.6179 -6.9854 -0.7648 33 1 2.8389 -6.4761 2.0681 34 1 4.1467 -5.7121 1.1331 35 1 5.8000 -7.0925 -0.0586 36 1 6.9321 -9.2746 -0.1520 37 1 5.2502 -12.8407 1.7148 38 1 1.6287 -13.0864 3.8307 39 1 2.6599 -8.9264 2.1877 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309757838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:41 Heat of formation + Delta-G solvation = 33.620892 kcal Electronic energy + Delta-G solvation = -25349.526553 eV Core-core repulsion = 21420.598684 eV Total energy + Delta-G solvation = -3928.927868 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.43901 -41.37165 -38.19801 -37.17722 -36.95460 -35.86969 -35.19625 -33.35495 -33.10001 -32.38859 -31.04205 -27.57855 -27.56475 -25.52441 -24.32159 -23.58814 -22.69968 -22.26211 -20.38510 -19.57072 -19.04953 -18.23166 -17.79845 -17.42739 -17.12811 -16.99196 -16.94790 -16.51948 -16.43637 -15.99887 -15.42860 -15.12525 -15.10054 -14.96434 -14.56570 -14.39076 -14.02695 -13.70298 -13.33901 -13.22818 -13.15012 -13.08935 -12.92279 -12.89081 -12.75604 -12.21194 -12.11591 -12.06810 -11.72299 -11.33364 -11.19513 -11.07788 -10.95733 -10.86064 -10.62911 -10.44247 -9.72748 -8.24155 -6.37826 -0.75417 -0.52717 -0.00920 0.80232 0.86453 1.43037 1.44435 1.55372 1.78182 1.87393 2.39571 2.64487 2.81069 3.02439 3.09838 3.23861 3.27749 3.39820 3.54821 3.81715 3.93402 4.01397 4.02269 4.17482 4.22704 4.36373 4.52631 4.65633 4.70735 4.74800 4.81764 5.03632 5.15236 5.26267 5.30615 5.32098 5.39185 5.70870 5.80667 6.01846 6.08152 6.50094 6.76844 6.91718 7.32524 8.88042 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.023024 B = 0.002206 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.843785 B =12688.701002 C =13307.352604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.007 4.007 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.255 1.255 7 C -0.535 4.535 8 H 0.081 0.919 9 C 0.017 3.983 10 C -0.582 4.582 11 S 2.618 3.382 12 O -1.000 7.000 13 O -0.999 6.999 14 N -1.105 6.105 15 C 0.144 3.856 16 C -0.032 4.032 17 C -0.144 4.144 18 C 0.137 3.863 19 N -0.505 5.505 20 C 0.335 3.665 21 N -0.343 5.343 22 C 0.291 3.709 23 N -0.561 5.561 24 C 0.214 3.786 25 N -0.343 5.343 26 C -0.156 4.156 27 H 0.266 0.734 28 H 0.005 0.995 29 H 0.006 0.994 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.424 0.576 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.186 0.814 36 H 0.212 0.788 37 H 0.254 0.746 38 H 0.257 0.743 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.262 -21.403 1.932 27.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.178 1.178 7 C -0.574 4.574 8 H 0.099 0.901 9 C -0.022 4.022 10 C -0.715 4.715 11 S 2.715 3.285 12 O -0.990 6.990 13 O -0.989 6.989 14 N -0.867 5.867 15 C 0.019 3.981 16 C -0.042 4.042 17 C -0.165 4.165 18 C -0.021 4.021 19 N -0.219 5.219 20 C 0.109 3.891 21 N -0.128 5.128 22 C -0.004 4.004 23 N -0.287 5.287 24 C -0.088 4.088 25 N -0.168 5.168 26 C -0.179 4.179 27 H 0.075 0.925 28 H 0.023 0.977 29 H 0.024 0.976 30 H 0.168 0.832 31 H 0.168 0.832 32 H 0.261 0.739 33 H 0.104 0.896 34 H 0.140 0.860 35 H 0.203 0.797 36 H 0.229 0.771 37 H 0.270 0.730 38 H 0.273 0.727 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 16.079 -21.976 2.300 27.326 hybrid contribution -0.185 1.596 -0.224 1.623 sum 15.894 -20.379 2.075 25.927 Atomic orbital electron populations 1.70107 1.08136 1.28234 1.51098 1.26137 0.95831 1.03975 0.94587 0.85315 0.78713 0.77698 0.78535 1.19741 1.21267 1.17848 1.21539 0.94143 0.90594 1.51094 0.90130 1.18845 0.93767 0.93260 0.96345 1.30295 1.12662 1.15454 1.13053 1.04547 0.74652 0.76673 0.72590 1.93511 1.72948 1.85924 1.46644 1.93509 1.72758 1.85508 1.47104 1.55325 1.52231 1.51128 1.27974 1.20537 0.93359 0.95249 0.88984 1.20178 0.95093 0.93899 0.94992 1.22642 0.94124 1.01307 0.98412 1.23320 0.99804 0.85850 0.93161 1.66915 1.09112 1.35319 1.10550 1.17771 0.91799 0.83918 0.95595 1.47613 1.16628 1.08212 1.40344 1.26974 0.99775 0.79838 0.93841 1.70751 1.05484 1.33931 1.18515 1.26974 0.97928 0.86744 0.97186 1.78212 1.00140 1.22351 1.16134 1.21636 1.01824 0.91659 1.02786 0.92527 0.97712 0.97561 0.83190 0.83204 0.73948 0.89635 0.85954 0.79667 0.77106 0.73029 0.72748 0.84921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.04 13.29 21.45 0.28 -55.76 16 2 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 3 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 7 C -0.53 -28.23 9.11 25.60 0.23 -28.00 16 8 H 0.08 3.84 7.74 -2.91 -0.02 3.81 16 9 C 0.02 0.83 4.98 29.85 0.15 0.98 16 10 C -0.58 -19.33 6.01 71.98 0.43 -18.89 16 11 S 2.62 85.21 5.46 -56.49 -0.31 84.90 16 12 O -1.00 -39.89 18.08 -127.65 -2.31 -42.20 16 13 O -1.00 -39.78 17.49 -127.65 -2.23 -42.01 16 14 N -1.11 -22.76 5.88 -190.79 -1.12 -23.88 16 15 C 0.14 2.29 6.30 85.63 0.54 2.83 16 16 C -0.03 -0.46 5.31 -19.69 -0.10 -0.56 16 17 C -0.14 -1.17 9.81 22.38 0.22 -0.95 16 18 C 0.14 1.13 11.18 84.66 0.95 2.07 16 19 N -0.51 -7.50 9.90 -192.78 -1.91 -9.41 16 20 C 0.34 6.58 7.56 132.75 1.00 7.59 16 21 N -0.34 -7.31 3.81 -196.11 -0.75 -8.06 16 22 C 0.29 5.12 12.26 180.25 2.21 7.33 16 23 N -0.56 -11.07 11.19 -203.70 -2.28 -13.35 16 24 C 0.21 3.98 13.03 180.75 2.35 6.33 16 25 N -0.34 -8.00 12.02 -61.22 -0.74 -8.74 16 26 C -0.16 -3.09 9.42 22.48 0.21 -2.88 16 27 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 28 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.15 4.03 8.14 -2.39 -0.02 4.01 16 31 H 0.15 4.14 8.14 -2.39 -0.02 4.12 16 32 H 0.42 7.32 8.61 -96.75 -0.83 6.49 16 33 H 0.09 1.60 7.65 -2.39 -0.02 1.58 16 34 H 0.12 1.10 8.10 -2.39 -0.02 1.08 16 35 H 0.19 0.24 8.06 -2.91 -0.02 0.21 16 36 H 0.21 0.02 8.06 -2.92 -0.02 0.00 16 37 H 0.25 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.26 2.56 8.06 -2.91 -0.02 2.53 16 39 H 0.13 3.11 7.73 -2.91 -0.02 3.09 16 Total: -1.00 -85.68 361.34 -0.41 -86.09 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.26 Total: 12.51 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 8.66 Total: -24.07 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -6.51 Total: -119.19 kcal Atomic # 8 Polarization: -79.67 SS G_CDS: -4.54 Total: -84.21 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: 85.21 SS G_CDS: -0.31 Total: 84.90 kcal Total: -85.68 -0.41 -86.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309757838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.706 kcal (2) G-P(sol) polarization free energy of solvation -85.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds