Wall clock time and date at job start Tue Mar 31 2020 20:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36890 * 127.04125 * 2 1 4 4 C 1.47906 * 126.52323 * 0.23758 * 3 2 1 5 5 C 1.39656 * 120.12296 * 179.72924 * 4 3 2 6 6 N 1.31947 * 119.84993 * 179.73469 * 5 4 3 7 7 C 1.32243 * 120.10566 * 0.51757 * 6 5 4 8 8 C 1.38442 * 120.25122 * 359.75495 * 7 6 5 9 9 N 1.31997 * 120.14948 * 359.97438 * 8 7 6 10 10 N 1.31473 * 106.95481 * 180.26417 * 3 2 1 11 11 N 1.28568 * 109.56619 * 359.97438 * 10 3 2 12 12 C 1.30680 * 110.01338 * 0.02562 * 11 10 3 13 13 S 1.76202 * 126.22260 * 179.97438 * 12 11 10 14 14 O 1.42100 * 104.27438 * 26.09890 * 13 12 11 15 15 O 1.42107 * 104.27545 * 153.95562 * 13 12 11 16 16 C 1.81392 * 104.44905 * 270.02562 * 13 12 11 17 17 C 1.53002 * 109.47103 * 179.97438 * 16 13 12 18 18 C 1.53005 * 109.47187 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.46883 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00210 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99624 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99965 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99599 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47103 * 90.00000 * 23 21 19 25 25 H 1.48500 * 109.46969 * 209.99581 * 23 21 19 26 26 H 1.48494 * 109.47243 * 329.99739 * 23 21 19 27 27 H 1.08993 * 109.47066 * 269.68256 * 1 2 3 28 28 H 1.08998 * 109.47186 * 29.69170 * 1 2 3 29 29 H 1.09006 * 109.46540 * 149.68623 * 1 2 3 30 30 H 1.08006 * 120.07198 * 359.97165 * 5 4 3 31 31 H 1.08004 * 119.87339 * 179.73348 * 7 6 5 32 32 H 1.08002 * 119.93067 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.47551 * 299.99959 * 16 13 12 34 34 H 1.09002 * 109.47424 * 60.00082 * 16 13 12 35 35 H 1.08998 * 109.47677 * 300.00757 * 17 16 13 36 36 H 1.09005 * 109.47029 * 60.00578 * 17 16 13 37 37 H 1.09004 * 109.46682 * 300.00226 * 18 17 16 38 38 H 1.08993 * 109.47049 * 59.99978 * 18 17 16 39 39 H 0.97006 * 119.99855 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2896 1.0927 0.0000 4 6 1.8712 2.5113 0.0049 5 6 2.8315 3.5253 0.0100 6 7 2.4521 4.7890 0.0091 7 6 1.1657 5.0955 0.0137 8 6 0.2101 4.0937 0.0144 9 7 0.5784 2.8262 0.0100 10 7 3.5244 0.6411 -0.0058 11 7 3.5127 -0.6445 -0.0088 12 6 2.2808 -1.0806 -0.0056 13 16 1.7736 -2.7680 -0.0085 14 8 2.8592 -3.4612 0.5915 15 8 0.4899 -2.7491 0.6007 16 6 1.6379 -3.1968 -1.7658 17 6 1.1993 -4.6563 -1.9022 18 6 1.0854 -5.0182 -3.3845 19 6 0.6529 -6.4555 -3.5188 20 1 0.4772 -7.0514 -2.6354 21 6 0.4824 -7.0101 -4.7696 22 7 0.6968 -6.2846 -5.8453 23 14 -0.0530 -8.7919 -4.9361 24 1 -1.5359 -8.8615 -4.9759 25 1 0.5030 -9.3608 -6.1900 26 1 0.4480 -9.5699 -3.7747 27 1 -0.3633 -0.0057 1.0276 28 1 -0.3633 0.8927 -0.5090 29 1 -0.3633 -0.8872 -0.5187 30 1 3.8822 3.2755 0.0108 31 1 0.8594 6.1312 0.0173 32 1 -0.8391 4.3499 0.0186 33 1 0.9012 -2.5497 -2.2419 34 1 2.6058 -3.0620 -2.2486 35 1 1.9362 -5.3032 -1.4262 36 1 0.2314 -4.7915 -1.4195 37 1 0.3487 -4.3713 -3.8608 38 1 2.0534 -4.8831 -3.8669 39 1 0.5765 -6.6747 -6.7253 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320978432.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:42 Heat of formation + Delta-G solvation = 57.352363 kcal Electronic energy + Delta-G solvation = -25862.846515 eV Core-core repulsion = 21934.947720 eV Total energy + Delta-G solvation = -3927.898794 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.56413 -41.56359 -37.36401 -36.10963 -35.71147 -34.84191 -34.82560 -33.37523 -32.29557 -30.46150 -28.13278 -27.98294 -25.70457 -25.36015 -24.03311 -23.19256 -22.12731 -20.67427 -19.36768 -18.27057 -18.10105 -17.60115 -17.28871 -16.98496 -16.57774 -16.37992 -15.88072 -15.72047 -15.29456 -14.90147 -14.53194 -14.44084 -13.84580 -13.74041 -13.37958 -12.75124 -12.46821 -12.42714 -12.28348 -12.23141 -12.10374 -12.01628 -11.98074 -11.76780 -11.39892 -11.11355 -10.99083 -10.95799 -10.91425 -10.72457 -10.48370 -10.06206 -9.85615 -9.56904 -9.40851 -9.21174 -8.46154 -6.10976 -4.14611 -0.36842 -0.19360 0.36272 1.07743 1.79848 2.14136 2.56089 2.86283 3.08800 3.27546 3.34277 3.37967 3.54617 3.64530 3.66552 3.78058 3.95986 4.29437 4.37886 4.42039 4.49294 4.69723 4.83672 4.90275 4.91497 4.97509 5.11311 5.25475 5.26689 5.42541 5.61472 5.66382 6.01601 6.11532 6.27425 6.48055 6.72681 6.99662 7.48816 7.57262 7.86197 7.90366 8.24895 8.91402 9.50604 11.00130 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020339 B = 0.002402 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.327841 B =11653.253625 C =12163.514375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.399 5.399 3 C 0.236 3.764 4 C 0.143 3.857 5 C 0.107 3.893 6 N -0.430 5.430 7 C 0.064 3.936 8 C 0.061 3.939 9 N -0.431 5.431 10 N -0.259 5.259 11 N -0.185 5.185 12 C -0.344 4.344 13 S 2.501 3.499 14 O -0.899 6.899 15 O -0.925 6.925 16 C -0.571 4.571 17 C -0.107 4.107 18 C 0.031 3.969 19 C -0.527 4.527 20 H 0.060 0.940 21 C 0.058 3.942 22 N -0.894 5.894 23 Si 0.895 3.105 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.272 1.272 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.187 0.813 31 H 0.179 0.821 32 H 0.182 0.818 33 H 0.133 0.867 34 H 0.142 0.858 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.022 0.978 38 H 0.024 0.976 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.671 23.343 11.470 26.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.086 5.086 3 C -0.029 4.029 4 C 0.003 3.997 5 C -0.055 4.055 6 N -0.144 5.144 7 C -0.096 4.096 8 C -0.100 4.100 9 N -0.147 5.147 10 N -0.107 5.107 11 N -0.032 5.032 12 C -0.685 4.685 13 S 2.673 3.327 14 O -0.895 6.895 15 O -0.921 6.921 16 C -0.705 4.705 17 C -0.147 4.147 18 C -0.008 4.008 19 C -0.566 4.566 20 H 0.078 0.922 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.723 3.277 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 H 0.118 0.882 28 H 0.135 0.865 29 H 0.123 0.877 30 H 0.204 0.796 31 H 0.196 0.804 32 H 0.199 0.801 33 H 0.151 0.849 34 H 0.160 0.840 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.042 0.958 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.374 22.918 12.080 25.943 hybrid contribution -1.554 -0.173 -0.771 1.743 sum -2.928 22.744 11.309 25.569 Atomic orbital electron populations 1.22799 0.72511 1.06911 1.06481 1.46133 1.10064 1.04077 1.48287 1.22585 0.87401 0.88112 1.04836 1.19028 0.90833 0.89183 1.00673 1.23866 1.01860 0.87131 0.92596 1.68647 1.18217 1.19221 1.08298 1.24070 0.89122 1.02219 0.94202 1.23828 1.02467 0.87639 0.96098 1.68261 1.16291 1.21559 1.08617 1.74570 1.15516 1.03264 1.17336 1.74317 1.15754 1.02590 1.10503 1.38783 0.94535 1.17299 1.17904 1.06579 0.74850 0.71077 0.80189 1.93622 1.54120 1.67391 1.74392 1.93582 1.39630 1.84220 1.74685 1.30248 1.12355 1.09699 1.18209 1.21655 1.01206 0.87070 1.04773 1.19092 0.97966 0.96796 0.86903 1.21214 1.46417 0.96492 0.92460 0.92203 1.25020 0.95295 0.98144 0.95885 1.69953 1.49042 1.36489 0.97827 0.86538 0.78804 0.84693 0.77681 1.20573 1.21156 1.19672 0.88168 0.86499 0.87680 0.79608 0.80373 0.80120 0.84881 0.83953 0.90796 0.91014 0.95971 0.95755 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.50 9.70 59.85 0.58 1.08 16 2 N -0.40 -5.01 3.18 -122.11 -0.39 -5.40 16 3 C 0.24 2.99 7.82 -154.21 -1.21 1.79 16 4 C 0.14 1.42 6.75 -82.85 -0.56 0.86 16 5 C 0.11 0.94 10.88 -16.97 -0.18 0.75 16 6 N -0.43 -3.39 10.49 -12.73 -0.13 -3.52 16 7 C 0.06 0.31 11.22 -17.30 -0.19 0.12 16 8 C 0.06 0.30 11.22 -17.41 -0.20 0.10 16 9 N -0.43 -3.50 7.98 -9.65 -0.08 -3.58 16 10 N -0.26 -3.83 11.92 32.51 0.39 -3.44 16 11 N -0.18 -3.01 12.19 30.36 0.37 -2.64 16 12 C -0.34 -4.99 7.67 -89.90 -0.69 -5.68 16 13 S 2.50 36.22 5.16 -107.50 -0.55 35.66 16 14 O -0.90 -15.84 17.94 -57.54 -1.03 -16.88 16 15 O -0.92 -13.80 15.80 -57.54 -0.91 -14.70 16 16 C -0.57 -8.10 5.98 37.16 0.22 -7.88 16 17 C -0.11 -1.98 5.16 -26.73 -0.14 -2.12 16 18 C 0.03 0.74 4.97 -27.88 -0.14 0.60 16 19 C -0.53 -14.22 9.11 -34.44 -0.31 -14.53 16 20 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 23 Si 0.90 21.01 29.54 -169.99 -5.02 15.98 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.12 0.89 6.26 -51.93 -0.33 0.56 16 29 H 0.10 0.89 6.89 -51.93 -0.36 0.53 16 30 H 0.19 1.47 7.87 -52.48 -0.41 1.06 16 31 H 0.18 0.20 8.06 -52.48 -0.42 -0.22 16 32 H 0.18 0.19 8.06 -52.49 -0.42 -0.23 16 33 H 0.13 1.56 8.14 -51.92 -0.42 1.13 16 34 H 0.14 1.87 8.14 -51.92 -0.42 1.45 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 354.93 15.07 5.35 5.35 Total: -1.00 -36.53 354.93 -8.63 -45.16 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -4.44 Total: -3.48 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -2.91 Total: -23.38 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.89 Total: -43.72 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -1.94 Total: -31.58 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 36.22 SS G_CDS: -0.55 Total: 35.66 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.53 -8.63 -45.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320978432.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.516 kcal (2) G-P(sol) polarization free energy of solvation -36.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds